KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:16 2014 Check: 00 .. Name: ENSP00000257909/1-778 Len: 868 Check: 9922 Weight: 1.00 Name: ENSBTAP00000011203/1-718 Len: 868 Check: 4764 Weight: 1.00 Name: bmy_05784T0/1-757 Len: 868 Check: 9155 Weight: 1.00 Name: ENSTTRP00000004272/1-719 Len: 868 Check: 3804 Weight: 1.00 // 1 50 ENSP00000257909/1-778 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011203/1-718 ---------- ---------- ---------- ---------- ---------- bmy_05784T0/1-757 MIKSKQQESI GLTPAAVMEA MSCSFPVFTE NRLTVKLACE AAPSSPPVGS ENSTTRP00000004272/1-719 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000257909/1-778 ---------- ---------M TTRQATKDPL LRGVSPTPSK IPVRSQKRTP ENSBTAP00000011203/1-718 ---------- ---------M TTLQAPKDPL LRGVSPTPSK IPVRSQRRPP bmy_05784T0/1-757 LREMEDSLTS NNSYKVVVVM TTLQATKDPL LRGVSPTPSK IPVRSQRRPA ENSTTRP00000004272/1-719 ---------- ---------M TTLQATKDPL LRGVSPTPSK IPVRSQRRPP 101 150 ENSP00000257909/1-778 FPTVTSCAVD QENQDPRRWV QKPPLNIQRP LVDSAGPRPK ARHQAETSQR ENSBTAP00000011203/1-718 LPTVKPSALD QENQDPKRLG QK--LSIQRP LADSAGPRLK ATRQTEQSEK bmy_05784T0/1-757 FPTVKPSALD QENQDPRRLV QK--LSSQRP LVDSAGPRPK ATRQTEQSER ENSTTRP00000004272/1-719 LPTVKPSALD QENQDPRRLV QK--LSSQRP LVDSAGPRPK ATHQTEQSER 151 200 ENSP00000257909/1-778 LVGISQPRNP LEELRPSPRG QNVGPGPPAQ TEAPGTIEFV ADPAALATIL ENSBTAP00000011203/1-718 LVGSTQLRNP LEELRPSHGG QNVGPRPPPQ TEAPGTIEFV ADPAALATIL bmy_05784T0/1-757 LVGSTQLRNP LEELRPSPGR QNVGPRLPPQ KEAPGTIEFV ADPAALATIL ENSTTRP00000004272/1-719 LVGSTQLRNP LEELRPSPGR QNVGPRPPLQ TEAPGTIEFV ADPAALATIL 201 250 ENSP00000257909/1-778 SGEGVKSCHL GRQPSLAKRV LVRGSQGGTT QRVQGVRASA YLAPRTPTHR ENSBTAP00000011203/1-718 SGEGVKSCRL GRQPSLAQRV LVRGTQGGTI RKGQDARASA YLAPRTPTHR bmy_05784T0/1-757 SGEGVKSCRL GRQPSLAQRV LVRGNQGGTI RRGQDARASA YLAPRTPTHR ENSTTRP00000004272/1-719 SGEGVKSCRL GRQPSLAQRV LVRGNQGGTI RRRQDARASA YLAPRTPTHR 251 300 ENSP00000257909/1-778 LDPARASCFS RLEGPGPRGR TLCPQRLQAL ISPSGPSFHP STRPSFQELR ENSBTAP00000011203/1-718 LDPVRASCFS RLEGPGPRGR TLCPQRLEAL IPPSGSSSHP SALPCFQELR bmy_05784T0/1-757 LDPARASCFS RLEGPGPRGR TLCPQRLEAL VSALEGLILN ASGNSFQGQS ENSTTRP00000004272/1-719 LDPARASCFS RLEGPGPRGR TLCPQRLEAL IPPSGPSSHP SAPPGFQELR 301 350 ENSP00000257909/1-778 RETAGSSRTS VSQASGLLLE TPVQPAFSLP KGEREVVTHS DEGGVASLGL ENSBTAP00000011203/1-718 RETSGSSKTS VSQASGSLPE TSVQPASSLP EGEHEVVTQS DEGGGGPLGL bmy_05784T0/1-757 WALGGK---T LQQISCLLL- -----ASSLP EGEYEVVTHS DERGGAPLGL ENSTTRP00000004272/1-719 RETGGNSKTS VSQASGLLLE TLVKPASSLP EGEYEVVTHS DERGGGPLGL 351 400 ENSP00000257909/1-778 AQRVPLRENR EMSHTRDSHD SHLMPSPAPV AQPLPGHVVP CPSPFGRAQR ENSBTAP00000011203/1-718 AQRIPLKETR DKTHTRDGCD SCLMPSPGQA VPP----AIT RPSPFGRAQR bmy_05784T0/1-757 AQRVPLKETR EITHTK---- ---------- ---------- ---------- ENSTTRP00000004272/1-719 AQRVPLKETR ETTHTKXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXR 401 450 ENSP00000257909/1-778 VPSPGPPTLT SYSVLRRLTV QPKTRFTPMP STPRVQQAQ- ---------- ENSBTAP00000011203/1-718 VPSPGPSAPI SYSVLRRLAT RPRTQFTPLP SASRVQQAR- ---------- bmy_05784T0/1-757 ---------T SYSVLRRLAI RPKTQFTPLS SAPRVQQVRE GRGGSWHRPG ENSTTRP00000004272/1-719 VPSPGPSAPT SYSVLRRLAI RPKTQFTPLP SAPRARQAQ- ---------- 451 500 ENSP00000257909/1-778 -------WLR GVSPQSCSED PALP-W-EQV AVRLFDQESC IRSLEGSGKP ENSBTAP00000011203/1-718 -------GLS GLSPQPCPEE PALP-W-EQI AVRLFDQESG IRLQEGPGKP bmy_05784T0/1-757 LGEEGDGWSS SYSSLASSCG PSPPMWQEQI AVRLFDQESC IRLQEGPGKP ENSTTRP00000004272/1-719 -------WLS GLSPQPCPEE PALP-W-EQI AVRLFDQESG IRLQEGPGKP 501 550 ENSP00000257909/1-778 PVATPSGPHS NRTPSLQEVK IQRIGILQQL LRQEVEGLVG GQCVPLNGGS ENSBTAP00000011203/1-718 PVSTSYGPHP SRTPNLQELK MQRISILQQL LRQEVEGLAE GKCAPLNESS bmy_05784T0/1-757 SVSTPYGPHC SRTPNLQEMK MQRISILQQL LRQEVEGLAE GKCAPLNGGS ENSTTRP00000004272/1-719 PVSTPYGPHP SRTPNLQELK LQRISILQQL LRQEVEGLVD GKCAPLHGGS 551 600 ENSP00000257909/1-778 SLDMVELQPL LTEISRTLNA TEHNSGTSHL PGLLKHSGLP KPCLPEECGE ENSBTAP00000011203/1-718 SLDMVELQPL LAEISRTLNA PEKIPGAFHL SGLLQHPELP KPYFPEECGK bmy_05784T0/1-757 SLDMVELQPL LAEISRTLNV PENKSGAFHL SGMLQHSGLP KPYLPEGCGE ENSTTRP00000004272/1-719 SLDVVELQPL LAEISRTLNA PENKSGAFHL PGMLQHSGLP KPYLPEGCGE 601 650 ENSP00000257909/1-778 PQPCPPAEPG PPEAFCRSEP EIPEPSLQEQ LEVPEPYPPA EPRPLESCCR ENSBTAP00000011203/1-718 PDPCPRAEP- ---------- ---------- ---------- ---------- bmy_05784T0/1-757 PEPCPGAEP- ---------- ---------- ---------- ---------- ENSTTRP00000004272/1-719 PEPCPGAEP- ---------- ---------- ---------- ---------- 651 700 ENSP00000257909/1-778 SEPEIPESSR QEQLEVPEPC PPAEPRPLES YCRIEPEIPE SSRQEQLEVP ENSBTAP00000011203/1-718 ---------- ----EIAPPC PPAEQGPPES CHGRGPEKPE LSTQEQPEAS bmy_05784T0/1-757 ---------- ----EVSLPC PPAEPGTPES YHRRGPEISE LSTQEQPEAS ENSTTRP00000004272/1-719 ---------- ----EVALPC PPAEPGPPES YHRRGPEISE PSTQ---EAS 701 750 ENSP00000257909/1-778 EPCPPAEPGP LQPSTQGQSG PPGPCPRVEL GASEPCTLEH RSLESSLPPC ENSBTAP00000011203/1-718 GPSPPAEPGP LQACPQGQIG LPEPSTRVDP GVSEACSLEL RNPESSPRPR bmy_05784T0/1-757 EPCPLGEPGP LQACPQGQTG LPEPSPRVEP GVSEACSLEP RSPESSPWPC ENSTTRP00000004272/1-719 EPCPLGEPGP LQACPQGQTG LPEPSPRVEP GVSEACSLEP RSPESSPWSC 751 800 ENSP00000257909/1-778 CSQWAPATTS LIFSSQHPLC ASPPICSLQS LRPPAGQAGL SNLAPRTLAL ENSBTAP00000011203/1-718 TSQWAPATTS LTFSSQRPLC ASPPIRSLQS LKPSPGPAGA SHPAPRTMAL bmy_05784T0/1-757 CSQWAPATTS LTFSSQRPLC ASPPIHSLQS LKPPTGQAGP SNLAPRTLAL ENSTTRP00000004272/1-719 CSQWAPATTS LTFSSQRPLC ASPPIHSLQS LKPPTGQAGP SNLAPRTLAL 801 850 ENSP00000257909/1-778 RERLKSCLTA IHCFHEARLD DECAFYTSRA PPSGPTRVCT NPVATLLEWQ ENSBTAP00000011203/1-718 RQRLKACLTA IHGFHEACLD DECAFYTSRA PPSGLTRVCT NPVAMLLEWQ bmy_05784T0/1-757 RQRLKACLTA IHHFHEVRLD DECAFYTSRA PPSGLTRVCT NPVATXLERQ ENSTTRP00000004272/1-719 RQRLKACLTA IHHFHEARLD DECAFYTSRA PPSGLTRVCT NPVATLLERQ 851 900 ENSP00000257909/1-778 DALCFIPVGS AAPQGSP- ENSBTAP00000011203/1-718 DALCFIPVGD AAPQDSPS bmy_05784T0/1-757 DAL--VSLRS TASYACGK ENSTTRP00000004272/1-719 DALCFIPVGS AAPQDSPS