KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:16 2014 Check: 00 .. Name: bmy_14456T0/1-206 Len: 301 Check: 7423 Weight: 1.00 Name: ENSBTAP00000011204/1-263 Len: 301 Check: 7484 Weight: 1.00 Name: BACU018194/1-284 Len: 301 Check: 4198 Weight: 1.00 Name: ENSTTRP00000013877/1-263 Len: 301 Check: 3267 Weight: 1.00 // 1 50 bmy_14456T0/1-206 MQTPREKVQP CSRVVCHVRK PSLCTCYLVA ----GCGVPA IDPVLSSLSR ENSBTAP00000011204/1-263 ---------- -------MAP LWLLSCFALV GAAFGCGVPA IQPVLSGLAR BACU018194/1-284 ---------- -------MAF LWLLSCFALV GAAFGCGVPA IDPVLSGLSR ENSTTRP00000013877/1-263 ---------- -------MAF LWLLSCFALL GAAFGCGVPA IDPVLSGLSR 51 100 bmy_14456T0/1-206 IVNGEDAVPG SWPWQVSLQT SSGFHFCGGS LISEDWVVTA AHCGVKTSDL ENSBTAP00000011204/1-263 IVNGEDAVPG SWPWQVSLQD STGFHFCGGS LISEDWVVTA AHCGVTTSDV BACU018194/1-284 IVNGEDAVPG SWPWQVSLQD STGFHFCGGS LISEDWVVTA AHCGVKTSDL ENSTTRP00000013877/1-263 IVNGEEAVPG SWPWQVSLQD STGFHFCGGS LISEDWVVTA AHCGVKTSDL 101 150 bmy_14456T0/1-206 VVAGEFDQGS DAENIQVLKI AKVFKNPKFS MLTVRNDITL LKLATPARFS ENSBTAP00000011204/1-263 VVAGEFDQGL QTEDTQVLKI GKVFKNPKFS ILTVRNDITL LKLATPAQFS BACU018194/1-284 VVAGEFDQGS DAENIQVLKI AKVFKNPKFN MLTVRNDITL LKLATPARFS ENSTTRP00000013877/1-263 VVAGEFDQGS DAENIQVLKI AKVFKNPKFN MFTVRNDITL LKLATPARFS 151 200 bmy_14456T0/1-206 KTVSPVCLPR ANDDFPTGML CVTTGWGKTR YNVSEETPKY QQVS------ ENSBTAP00000011204/1-263 ETVSAVCLPS ADEDFPAGML CATTGWGKTK YNALKTPDKL QQATLPIVSN BACU018194/1-284 ETVSPVCLPS ANDDFPAGML CVTTGWGKTR YNAPKTPDKL QQATLPILSN ENSTTRP00000013877/1-263 ETVSAVCLPS ANDDFPPGTL CATTGWGKTK HNAHKIPDKL QQATLPILSN 201 250 bmy_14456T0/1-206 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011204/1-263 TDCRKYWGSR VTDVMICAGA SGVSSCM--- ---------- --------GD BACU018194/1-284 ANCRKYWGNK ITDVMICAGA SGVSSCMCPS EGLDQPYQMP LVRAGSGQGD ENSTTRP00000013877/1-263 ADCKKYWGRK ITDVMICAGA SGVSSCM--- ---------- --------GD 251 300 bmy_14456T0/1-206 --PPLTCKE- ---------- -------VDS PD-------- -------FPP ENSBTAP00000011204/1-263 SGGPLVCQKN GAWTLAGIVS WGSSTCSTST PAVYARVTAL MPWVQETLAA BACU018194/1-284 SGGPLVCQKD GAWTLVGIVS WGSGTCSTST PAVYARVTAL IPWVQKILAA ENSTTRP00000013877/1-263 SGGPLVCQKD GAWTLVGIVS WGSGTCSTST PAVYARVTAL IPWVQQILAA 301 350 bmy_14456T0/1-206 D ENSBTAP00000011204/1-263 N BACU018194/1-284 N ENSTTRP00000013877/1-263 N