KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:17 2014 Check: 00 .. Name: ENSP00000264977/1-1150 Len: 1151 Check: 2242 Weight: 1.00 Name: ENSBTAP00000011215/1-1150 Len: 1151 Check: 3843 Weight: 1.00 Name: ENSTTRP00000002911/1-1147 Len: 1151 Check: 5584 Weight: 1.00 Name: bmy_08887T0/1-694 Len: 1151 Check: 1965 Weight: 1.00 Name: BACU003176/1-673 Len: 1151 Check: 4490 Weight: 1.00 // 1 50 ENSP00000264977/1-1150 MAATYRLVVS TVNHYSSVVI DRRFEQAIHY CTGTCHTFTH GIDCIVVHHS ENSBTAP00000011215/1-1150 MAATYRLVVS TVNHYSSVVI DRRFEQAIHY CTGTCHTFTH GVDCIVIHHS ENSTTRP00000002911/1-1147 MAATYRLVVS TVNHYSSVVI DRRFEQAVHY CTGTCHTFTH GVDCIVVHHS bmy_08887T0/1-694 MAATYRLVVS TVNHYSSVVI DRRFEQAVHY CTGTCHTFTH GVDCIVVHXS BACU003176/1-673 MAATYRLVVS TVNHYSSVVI DRRFEQAVHY CTGTCHTFTH GVDCIVVHHS 51 100 ENSP00000264977/1-1150 VCADLLHIPV SQFKDADLNS MFLPHENGLS SAEGDYPQQA FTGIPRVKRG ENSBTAP00000011215/1-1150 VCADLLHIPV SQFKDTDLDS LFLPHENGFS SAEGDYPHQA LTGIPKVRKG ENSTTRP00000002911/1-1147 VCADLLHIPV SQFRDADLDS LFLPHENGFS SAEGDYPHQA LTGIPRVRKG bmy_08887T0/1-694 VCADLLHIPV SQFRDADLDS LFLPHENGFS SAEGDYPHQA LTGIPRVRKG BACU003176/1-673 VCADLLHIPV SQFRDADLDS LFLPHENGFS SAEGDYPHQA LTGIPRVRKG 101 150 ENSP00000264977/1-1150 STFQNTYNLK DIAGEAISFA SGKIKEFSFE KLKNSNHAAY RKGRKVKSDS ENSBTAP00000011215/1-1150 STFQSTCNLK DIAGEAISFA SGKIKEFSLE KLKNSNHAAY KKGRKVKSDS ENSTTRP00000002911/1-1147 STFQNTCNLK DIAGEAISFA SGKIKEFSLE KLKNSNHAAY RKGRKVKSDS bmy_08887T0/1-694 STFQNTCNLK DIAGEAISFA SGKIKEFSLE KLKNSNHAAY RKGRKVKSDS BACU003176/1-673 STFQNTCNLK DIAGEAISFA SGKIKEFSLE KLKNSNHAAY RKGRKVKSDS 151 200 ENSP00000264977/1-1150 FNRRSVDLDL LCGHYNNDGN APSFGLLRSS SVEEKPLSHR NSLDTNLTSM ENSBTAP00000011215/1-1150 FNRRSVDFDL LCGHYNHDGN SPSFGLLRSS SVEEKSLSRR NSLDTNLTSV ENSTTRP00000002911/1-1147 FNRRSVDFDL LCGHYNHDGN SPSFGLLRSS SVEEKSLSHR NSLDTNLTSL bmy_08887T0/1-694 FNRRSVDFDL LCGHYNHDGN SPSFGLLRSS SVEEKSLSHR NSLDTNLTSL BACU003176/1-673 FNRRSVDFDL LCGHYNHDGN SPSFGLLRSS SVEEKSLSHR NSLDTNLTSL 201 250 ENSP00000264977/1-1150 FLQNFSEEDL VTQILEKHKI DNFSSGTDIK MCLDILLKCS EDLKKCTDII ENSBTAP00000011215/1-1150 FLHNFSEEDL VTQILEKHKI DNFSSGTDIK MCLDILLKCS EDLKKCTDII ENSTTRP00000002911/1-1147 LLHNFSEEDL VTQILEKHKI DNFSSGTDIK MCLDILLKCS EDLKKCTDII bmy_08887T0/1-694 LLHNFSEEDL VTQILEKHKI DNFSSATDIK MCLDILLKCS EDLKKCTDII BACU003176/1-673 LLHNFSEEDL VTQILEKHKI DNFSSATDIK MCLDILLKCS EDLKKCTDII 251 300 ENSP00000264977/1-1150 KQCIKKKSGS SISEGSGNDT ISSSETVYMN VMTRLASYLK KLPFEFMQSG ENSBTAP00000011215/1-1150 KQCIKKKTGS SINEGNGNDA ISSSETVYMN VMTRLASYLK KLPFEFMQSG ENSTTRP00000002911/1-1147 KQCIKKKSGS SISEGNGNDA ISSSETVYMN VMTRLASYLK KLPFEFMQSG bmy_08887T0/1-694 KQCIKKKSGS SINEGNGNDA ISSSETVYMN VMTRLASYLK KLPFEFMQSG BACU003176/1-673 KQCIKKKSGS SINEGNGNDA ISSSETVYMN VMTRLASYLK KLPFEFMQSG 301 350 ENSP00000264977/1-1150 NNEALDLTEL ISNMPSLQLT PFSPVFGTEQ PPKYEDVVQL SASDSGRFQT ENSBTAP00000011215/1-1150 NNEAIDLTEL VSNMPNLQLT PFSPVFGTEQ PPKYEDVVQL SPLDSGQFQT ENSTTRP00000002911/1-1147 NNEAIDLTEL VSNMPSLQLT PFSPVFGTEQ PPKYEDVVQL SAPDSGHFQT bmy_08887T0/1-694 NNEAIDLTEL VSNMPSLQLT PFSPVFGTEQ PPKYEDVVQL SAPDSGHFQT BACU003176/1-673 NNEAIDLTEL VSNMPSLQLT PFSPVFGTEQ PPKYEDVVQL SAPDSGHFQT 351 400 ENSP00000264977/1-1150 IELQNDKPNS RKMDTVQSIP NNSTNSLYNL EVNDPRTLKA VQVQSQSLTM ENSBTAP00000011215/1-1150 IELQDDQHSY RKTDTIKPIP NNSTNSLYNL EISDPRTLKD VQLQSQPLTV ENSTTRP00000002911/1-1147 IELQDDKHSS RKTDTVKSIP NNSTNSLCNL EISDPRPLKN VQLQSQSLTM bmy_08887T0/1-694 IELQDDKHSS RKTDTVKSIP KNSTNSLCNL EISDPRPLKN VQLQSQSLTM BACU003176/1-673 IELQDDKHSS RKTDTVKSIP KNSTNSLCNL EISDPRPLKN VQLQSQSLTM 401 450 ENSP00000264977/1-1150 NPLENVSSDD LMETLYIEEE SDGKKALDKG QKTENGPSHE LLKVNEHRAE ENSBTAP00000011215/1-1150 NPLENVSSGN LMETLYIEEE SDGKKALYHE QKTENGPSQE LIKVNEDRAE ENSTTRP00000002911/1-1147 NALENVSSGN LVETLYIEEE SDGKKTLDKG QRTENGPSQE LLKANEDRAE bmy_08887T0/1-694 NALENVSSGN LMETLYIEEE SDGKKALDKG QRTENGPSQE LLKVNEDRAE BACU003176/1-673 NALENVSSGN LMETLYIEEE SDGKKALDKG QRTENGPSQE LLKVNEDRAE 451 500 ENSP00000264977/1-1150 FPEHATHLKK CPTPMQNEIG KIFEKSFVNL PKEDCKSKVS KFEEGDQRDF ENSBTAP00000011215/1-1150 LSDHGTHLKK CPASMQNEIG KIFEKSVVSL PEEDLKSKVP KVEEENHRDF ENSTTRP00000002911/1-1147 LSVRGTHLKK CPASMQNEIG KIFEKSVVNL PEEGLKSKVP KVEEGNHRDF bmy_08887T0/1-694 LSDRGTHLKK CPASMQNEIG KIFEKPVVNL PEEDLKSKVP KVEEGNHRDF BACU003176/1-673 LSDRGTHLKK CPASMQNEIG KIFEKPVVNL PEEDLKSKVP KVEEGNHRDF 501 550 ENSP00000264977/1-1150 TNSSSQEEID KLLMDLESFS QKMETSLREP LAKGKNSNFL NSHSQLTGQT ENSBTAP00000011215/1-1150 INSNSQEEID KLLMDLESFS QKMETSLREP LAKGKSSNSL NSQSQLIDQL ENSTTRP00000002911/1-1147 MNPNSQEEID KLLMDLESFS QKMETSLREP LAKGKSSVSL NSHSQLTGHL bmy_08887T0/1-694 MNPNSQEEID KLLMDLESFS QKMETALREP LAKGKSSVSL NSHSQLTGQL BACU003176/1-673 MNPNSQEEID KLLMDLESFS QKMETALREP LAKGKSSVSL NSHSQLTGQL 551 600 ENSP00000264977/1-1150 LVDLEPKSKV SSPIEKVSPS CLTRIIETNG HKIEEEDRAL LLRILESIED ENSBTAP00000011215/1-1150 P-DLEPKSKV SSPTEKVSPS CLTRIIETNG HKIEEEDRAL LLRILESIED ENSTTRP00000002911/1-1147 PVDLEPESKV SSPTEKVSPS CLTRIIETNG HKIEEEDRAL LLRILESIED bmy_08887T0/1-694 PVDLEPKSKV SSPTEKVSPS CLTRIIETNG HKIEEEDRAL LLRILESIED BACU003176/1-673 PVDLEPKSKV SSPTEKVSPS CLTRIIETNG HKIEEEDRAL LLRILESIED 601 650 ENSP00000264977/1-1150 FAQELVECKS SRGSLSQEKE MMQILQETLT TSSQANLSVC RSPVGDKAKD ENSBTAP00000011215/1-1150 FAQELVECKS GRGSLSQEKE MMQILQETLT TSSQANLSVC RSPVGDKVKD ENSTTRP00000002911/1-1147 FAQELVECKS GRGNLSQEKE MMQILQETLT TSSQASLSVC RSPVGDKAND bmy_08887T0/1-694 FAQELVECKS GRGSLSQEKE MMQILQETLT TSSQASLSVC RSPVGDKAND BACU003176/1-673 FAQELVECKS GRGSLSQEKE MMQILQETLT TSSQASLSVC RSPVGDKAND 651 700 ENSP00000264977/1-1150 TTSAVLIQQT PEVIKIQNKP EKKPGTPLPP PATSPSSPRP LSPVPHVNNV ENSBTAP00000011215/1-1150 TTSVVLIQQT PEVIKIQNKP EKKPGTPLPP PAPFPSSPRP PSPVPHVNNV ENSTTRP00000002911/1-1147 TTSVVLIQQT PEVIKIQNKP EKKPGTPLPP PATFASSPRP LSPVPHVNNV bmy_08887T0/1-694 STSVVLIQQT PEVIK----- ---------- ---------- ---------- BACU003176/1-673 TTSVVLIQQT PEVIKVR--- ---------- ---------- ---------- 701 750 ENSP00000264977/1-1150 VNAPLSINIP RFYFPEGLPD TCSNHEQTLS RIETAFMDIE EQKADIYEMG ENSBTAP00000011215/1-1150 VSATLSINIP RFYFPEGLPD ACSNHEQTLS RIEAAFMDIE DQKADVYEMG ENSTTRP00000002911/1-1147 VNATLSINIP RFYFPEGLPD ACSNHEQTLS RIETAFMDIE DQKADIYEMG bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000264977/1-1150 KIAKVCGCPL YWKAPMFRAA GGEKTGFVTA QSFIAMWRKL LNNHHDDASK ENSBTAP00000011215/1-1150 KIAKACGCPL YWKAPMFRAA GGERTGFVSA QSFITIWRKL LSNHHDDASK ENSTTRP00000002911/1-1147 KIAKXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXDDASK bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000264977/1-1150 FICLLAKPNC SSLEQEDFIP LLQDVVDTHP GLTFLKDAPE FHSRYITTVI ENSBTAP00000011215/1-1150 FICLLAKPSC SSLEQDDFIP LLQDVVDTHP GLTFLKDAPE FHSRYITTVI ENSTTRP00000002911/1-1147 IC--LAKPSC SYLEQDD-VP LLQDVVDTHP GLTFLKDAPE FHSRYITTXX bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000264977/1-1150 QRIFYTVNRS WSGKITSTEI RKSNFLQTLA LLEEEEDINQ ITDYFSYEHF ENSBTAP00000011215/1-1150 QRIFYTVNRS WSGKITATEI RKSNFLQTLA LLEEEEDINQ ITDYFSYEHF ENSTTRP00000002911/1-1147 XXXXXXXXXX XXXXXXXXXX XXXXXXXTLA LLEEEEDINQ ITDYFSYEHF bmy_08887T0/1-694 ---------- -----TFDKV QCDILLKTLE ILETSLNIN- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000264977/1-1150 YVIYCKFWEL DTDHDLYISQ ADLSRYNDQA SSSRIIERIF SGAVTRGKTI ENSBTAP00000011215/1-1150 YVIYCKFWEL DSDHDLYISQ ADLSRYNDQA SSNRIIERIF SGAVTRGKTV ENSTTRP00000002911/1-1147 YVIYCKFWEL DSDHDLYISQ ADLSRYNDQA SSNRIIERIF SGAVTRGKTV bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000264977/1-1150 QKEGRMSYAD FVWFLISEED KRNPTSIEYW FRCMDVDGDG VLSMYELEYF ENSBTAP00000011215/1-1150 QKEGRMSYAD FVWFLISEED KRNPTSIEYW FRCMDVDGDG VLSMYELEYF ENSTTRP00000002911/1-1147 QKEGRMSYAD FVWFLISEED KRNPTSIEYW FRCMDVDGDG VLSMYELEYF bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---PDNLQF- ---------- ---------- 1001 1050 ENSP00000264977/1-1150 YEEQCERMEA MGIEPLPFHD LLCQMLDLVK PAVDGKITLR DLKRCRMAHI ENSBTAP00000011215/1-1150 YEEQCERMEA MGIEPLPFHD LLCQMLDLVK PASDGKITLR DLKRCRMAHI ENSTTRP00000002911/1-1147 YEEQCDRMEA MGIEPLPFHD LLCQMLDLVK PANDGKITLR DLKRCRMAHI bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000264977/1-1150 FYDTFFNLEK YLDHEQRDPF AVQKDVENDG PEPSDWDRFA AEEYETLVAE ENSBTAP00000011215/1-1150 FYDTFFNLEK YLDHEQRDPF AVQKDVENDS PEPSDWDRFA AEEYETLVAE ENSTTRP00000002911/1-1147 FYDTFFNLEK YLDHEQRDPF AVQKDVENDS PEPSDWDRFA AEEYETLVAE bmy_08887T0/1-694 ---------- ---------- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000264977/1-1150 ESAQAQFQEG -FEDYETDEP ASPSEFGNKS NKILSASLPE KCGKLQSVDE ENSBTAP00000011215/1-1150 ESAQAQFQEG SFEDYETEEP PSPSEIGNKG NKIVTSSLSE KCGKLQSVDE ENSTTRP00000002911/1-1147 ESAQAQFQEG SFEDYETEEP ASPSEIGNKG -KIVTSSLSE KCGKLQSVDE bmy_08887T0/1-694 ---------- -SKNYQ---- ---------- ---------- ---------- BACU003176/1-673 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000264977/1-1150 E ENSBTAP00000011215/1-1150 E ENSTTRP00000002911/1-1147 E bmy_08887T0/1-694 - BACU003176/1-673 -