KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:19 2014 Check: 00 .. Name: ENSTTRP00000009529/1-1063 Len: 1079 Check: 7961 Weight: 1.00 Name: ENSP00000355396/1-1065 Len: 1079 Check: 1318 Weight: 1.00 Name: ENSBTAP00000011238/1-1065 Len: 1079 Check: 3888 Weight: 1.00 Name: bmy_17790T0/1-707 Len: 1079 Check: 5962 Weight: 1.00 Name: BACU002693/1-1008 Len: 1079 Check: 3472 Weight: 1.00 // 1 50 ENSTTRP00000009529/1-1063 MAPAPQGVRE EPLLECGSGL LSRVLFLAQA VLLLLPAARA GLCPAPCSCR ENSP00000355396/1-1065 MAPAPLGVPE EQLLGCRSRV LSRLLFIAQT ALLLLPAAGA GLCPAPCSCR ENSBTAP00000011238/1-1065 MAPAPQGVRE EPLLECGSRL LSRLLFLAQA VVLLLPAARA GLCPVPCSCR bmy_17790T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU002693/1-1008 MAPAPQGVRE EPLLECGSGL LSRLLFLAQA VLLLLPAARA GLCPAPCSCR 51 100 ENSTTRP00000009529/1-1063 IPLLDCSRRK LPAPSWRALS SSLPPDAVSL DLSHNRLSNW NISLESQTLQ ENSP00000355396/1-1065 IPLLDCSRRK LPAPSWRALS GLLPPDTAIL DFSHNRLSNW NISLESQTLQ ENSBTAP00000011238/1-1065 IPLLDCSRRK LPAPSWRALS TSLPPDAVSL DLSHNRLSNW NISLESQTLQ bmy_17790T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU002693/1-1008 IPLLDCSRRK LPAPGWRALS SSLPPDAVSL DLSHNRLSNW NISLESQTLQ 101 150 ENSTTRP00000009529/1-1063 EVXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000355396/1-1065 EVKMNYNELT EIPYFGEPTS NITLLSLVHN IIPEINAQAL QFYPALESLD ENSBTAP00000011238/1-1065 EVKMNYNELT EIPYFGEPTS NITLLSLVHN IIPEINAEVF QFYPALETLD bmy_17790T0/1-707 ---MNYNELT EIPYFGEPTT NITLLSLVHN IIPEINAEAF QFYPALESLD BACU002693/1-1008 EVKMNYNELT EIPYFGEPTT NITLLSLVHN IIPEINAEAF QFYPALESLD 151 200 ENSTTRP00000009529/1-1063 XXXXXXXXXX XXXXXXXXXX XXNLSNNRIT ILEAGCFDNL -SSLLVVKLN ENSP00000355396/1-1065 LSSNIISEIK TSSFPRMQLK YLNLSNNRIT TLEAGCFDNL SSSLLVVKLN ENSBTAP00000011238/1-1065 LSSNQISEIK TSSFPRMQLK YLNLSNNRIT VLEAGCFDNL SSSLLVVKLN bmy_17790T0/1-707 LSSNIISEVK TSSFPRMQLK YLNLSNNRIT ILETGCFDNL SSSLLVVKLN BACU002693/1-1008 LSSNIISEVK TSSFPRMQLK YLNLSNNRIT ILEAGCFDNL SSSLLVVKLN 201 250 ENSTTRP00000009529/1-1063 RNRISMIPPK IFKLPHLQ-- ---------- --FLELKRNR IKVVEGLTFQ ENSP00000355396/1-1065 RNRMSMIPPK IFKLPHLQ-- ---------- --FLELKRNR IKIVEGLTFQ ENSBTAP00000011238/1-1065 RNRISMIPPK IFKLPHLQ-- ---------- --FLELKRNR IKVVEGLTFQ bmy_17790T0/1-707 RNRISMIPPK IFRLPHLQFL ANQQTSFLTV KLFLELKRNR IKVVEGLTFQ BACU002693/1-1008 RNRISMIPPK IFKLPHLQ-- ---------- --FLELKRNR IKIVEGLTFQ 251 300 ENSTTRP00000009529/1-1063 GLDSLRSLKM QRNGISKLKD GAFFGLDNME ELELEHNNLT EVNKGWLYGL ENSP00000355396/1-1065 GLDSLRSLKM QRNGISKLKD GAFFGLNNME ELELEHNNLT RVNKGWLYGL ENSBTAP00000011238/1-1065 GLDSLRSLKM QRNGISKLKD GAFFGLDNME ELELEHNNLT EVNKGWLYGL bmy_17790T0/1-707 GLDSLRSLKM QRNGISKLKD GAFFGLDNME E--------- ---------- BACU002693/1-1008 GLDSLRSLKM QRNGISKLKD GAFFGLDNME ELELEHNNLT EVNKGWLYGL 301 350 ENSTTRP00000009529/1-1063 RMLQQLYVSQ NAVERISPDA WEFCQRLSEL DLSYNQLTRL DESAFVGLSL ENSP00000355396/1-1065 RMLQQLYVSQ NAIERISPDA WEFCQRLSEL DLSYNQLTRL DESAFVGLSL ENSBTAP00000011238/1-1065 RMLQQLYVSQ NAVERISPDA WEFCQRLSEL DLSYNQLTRL DESAFVGLSL bmy_17790T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU002693/1-1008 RMLQQLYVSQ NAVERISPDA WEFCQRLSEL DLSYNQLTRL DESAFVGLSL 351 400 ENSTTRP00000009529/1-1063 LERLNLGDNR VTHIADGVFR FLSNLQTLNL RNNEISWAIE DAGEAFAGLT ENSP00000355396/1-1065 LERLNLGDNR VTHIADGVFR FLSNLQTLDL RNNEISWAIE DASEAFAGLT ENSBTAP00000011238/1-1065 LERLNLGDNR VTHIADGVFR FLSNLQTLNL RNNEISWAIE DASEAFAGLT bmy_17790T0/1-707 ---------- ---------- -------LNL RNNEISWAIE DASEAFAGLT BACU002693/1-1008 LERLNLGDNR VTHIADGVFR FLSNLQTLNL RNNEISWAIE DASEAFAGLT 401 450 ENSTTRP00000009529/1-1063 SLTKLILQGN QIKSITKKAF IGLESLEHLD LNNNAIMSIQ ENAFSQTRLK ENSP00000355396/1-1065 SLTKLILQGN QIKSITKKAF IGLESLEHLD LNNNAIMSIQ ENAFSQTHLK ENSBTAP00000011238/1-1065 SLTKLILQGN QIKSVTKKAF IGLESLEHLD LNNNAIMSIQ ENAFSQTRLK bmy_17790T0/1-707 SLTKLILQGN QIKSITKKAF IGLESLEHLD LNNNAIMSIQ ENAFSQTRLK BACU002693/1-1008 SLTKLILQGN QIKSITKKAF IGLESLEHLD LNNNAIMSIQ ENAFSQTRLK 451 500 ENSTTRP00000009529/1-1063 ELILNTSSLL CDCHLKWLLQ WLVDNNFQHS VNVSCAHPEW LAGQSILNVD ENSP00000355396/1-1065 ELILNTSSLL CDCHLKWLLQ WLVDNNFQHS VNVSCAHPEW LAGQSILNVD ENSBTAP00000011238/1-1065 ELILNTNSLL CDCHLKWLLQ WLVDNNFQHS VNVSCAHPEW LAGQSILNVD bmy_17790T0/1-707 ELILNTSSLL CDCHLKWLLQ WLVDNNFQHS VNVSCAHPEW LAGQSILNVD BACU002693/1-1008 ELILNTSSLL CDCHLKWLLQ WLVDNKFQHS VNVSCAHPEW LAGQSILNVD 501 550 ENSTTRP00000009529/1-1063 LKDFVCDDFL KPQIRTHPET TVALRSMNVT LTCTAVSSSD SPMSTLWRKD ENSP00000355396/1-1065 LKDFVCDDFL KPQIRTHPET IIALRGMNVT LTCTAVSSSD SPMSTVWRKD ENSBTAP00000011238/1-1065 LKDFVCDDLL KPQIRTHPET TVALRGVNVT LRCTAVSSSD SPMSALWRKD bmy_17790T0/1-707 LKDFVCDDFL KPQIRTHPET TVALRSMNVT LTCTAVSSSD SPMSTVWRKD BACU002693/1-1008 LKDFVCDDFL KPQIRTHPET TVALRSMNVT LTCTAVSSSD SPMSTVWRKD 551 600 ENSTTRP00000009529/1-1063 SEILYDADIE NFVRYQQQAG EALEYTSVLH LFNVNFTDEG KYQCIITNHF ENSP00000355396/1-1065 SEILYDVDTE NFVRYWQQAG EALEYTSILH LFNVNFTDEG KYQCIVTNHF ENSBTAP00000011238/1-1065 SEVLYDADIE NFVRYQQQAG EALEYTSVLH LFNVNFTDEG KYQCIITNHF bmy_17790T0/1-707 SEILYDADIE NFVRYQQQAG EALEYTSVLH LFNVNFTDEG KYQCIITNHF BACU002693/1-1008 SEILYDADIE NFVRYQQQAG EALEYTSVLH LFNVNFTDEG KYQCIITNHF 601 650 ENSTTRP00000009529/1-1063 GSNYSHISKL TVY-MPSFLK TPMDLTIRTG AMARLECAAE GHPAPQISWQ ENSP00000355396/1-1065 GSNYSQKAKL TVNEMPSFLK TPMDLTIRTG AMARLECAAE GHPAPQISWQ ENSBTAP00000011238/1-1065 GSNYSHKAKL TVNEMPSFLK TPMDLTIRTG AMARLECAAE GHPAPQISWQ bmy_17790T0/1-707 GSNYSHKAKL TVNEMPSFLK TPMDLTIRTG AMARLECAAE GHPAPQISWQ BACU002693/1-1008 GSNYSHKAKL TVNEMPSFLK TPMDLTIRTG AMARLECAAE GHPAPQISWQ 651 700 ENSTTRP00000009529/1-1063 KDGGTDFPAA RERRMHVMPE DDVFFIANVK IEDMGIYSCM AQNIAGGLSA ENSP00000355396/1-1065 KDGGTDFPAA RERRMHVMPE DDVFFIANVK IEDMGIYSCM AQNTAGGLSA ENSBTAP00000011238/1-1065 KDGGTDFPAA RERRMHVMPE DDVFFIANVK IEDMGIYSCM AQNIAGGLSA bmy_17790T0/1-707 KDGGTDFPAA RERRMHVMPE DDVFFIANVK IEDMGIYSCM AQNIAGGLSA BACU002693/1-1008 KDGGTDFPAA RERRMHVMPE DDVFFIANVK IEDMGIYSCM AQNIAGGLSA 701 750 ENSTTRP00000009529/1-1063 NASLIVLETP SFIRPLEDKT VTRGETAVLQ CIAGGSPAPR LNWTKDDGPL ENSP00000355396/1-1065 NASLTVLETP SFIRPLEDKT VTRGETAVLQ CIAGGSPAPR LNWTKDDGPL ENSBTAP00000011238/1-1065 NASLIVLETP SFIRPLEDKT VTRGETAVLQ CIAGGSPAPR LNWTKDDGPL bmy_17790T0/1-707 NASLIVLETP SFIRPLEDKT VTRGETAVLQ CIAGGSPAPR LNWTKDDGPL BACU002693/1-1008 NASLIVLETP SFIRPLEDKT VTRGETAVLQ CIAGGSPAPR LNWTKDDGPL 751 800 ENSTTRP00000009529/1-1063 LVTERHFFAA ANQLLIIVDA GLEDAGKYTC IMSNTLGTER GHIYLNVIST ENSP00000355396/1-1065 LVTERHFFAA ANQLLIIVDA GLEDAGKYTC IMSNTLGTER GHIYLNVISS ENSBTAP00000011238/1-1065 LVTERHFFAA ANQLLIIVDA GLDDAGKYTC IMSNTLGTER GHIYLNVISS bmy_17790T0/1-707 LVTERHFFAA ANQLLIIVDA GLEDAGKYTC IMSNTLGTER GHIYLNVIST BACU002693/1-1008 LVTERHFFAA ANQLLIIVDA GLEDAGKYTC IMSNTLGTER GHIYLNVIST 801 850 ENSTTRP00000009529/1-1063 PNCDSSQSSI GHEDDGWTTV GVVIIVVVCC VVGTSLIWVI VIYHMRRKNE ENSP00000355396/1-1065 PNCDSSQSSI GHEDDGWTTV GIVIIVVVCC VVGTSLIWVI VIYHMRRKNE ENSBTAP00000011238/1-1065 PNCDSSQSSI GHEDDGWTTV GIVIIVVVCC VVGTSLIWVI VIYHMRRKNE bmy_17790T0/1-707 PNCDSSQSSI GHEDDGWTTV GIVIIVVVCC VVGTSLIWVI VIYHMRRKNE BACU002693/1-1008 PNCDSSQSSI GHEDDGWTTI GIVIIVVVCC VVGTSLIWVI VIYHMRRKNE 851 900 ENSTTRP00000009529/1-1063 DYSITNTDEL NLPADIPSYL SSQGTLSEPQ EGYSNSEAGS HQQLMPPANG ENSP00000355396/1-1065 DYSITNTEEL NLPADIPSYL SSQGTLSEPQ EGYSNSEAGS HQQLMPPANG ENSBTAP00000011238/1-1065 DYSITNTEEL NLPADIPSYL SSQGTLSEPQ EGYSNSEAGS HQQLMPPANG bmy_17790T0/1-707 DYSITNTDEL NLPADIPSYL SSQGTLSEPQ EGYSNSEAGS HQQLMPPANG BACU002693/1-1008 DYSITNTDEL NLPADIPSYL SSQGTLSEPQ EGYSNSEAGS HQQLMPPANG 901 950 ENSTTRP00000009529/1-1063 YLHKGADGGT GTRVICSDCY DNANIYSRTR EYCPYTYIAE EDVLDQTLSS ENSP00000355396/1-1065 YIHKGTDGGT GTRVICSDCY DNANIYSRTR EYCPYTYIAE EDVLDQTLSS ENSBTAP00000011238/1-1065 YLHKGTDGGA GTRVICSDCY DNANIYSRTR EYCPYTYITE EDVLDQTLSS bmy_17790T0/1-707 YLHKGA---- ---------- ---------- ---------- ---------- BACU002693/1-1008 YLHKGADGGT GTRVICSDCY DNANIYSRTR EYCPYTYIAE EDVLDQTLPS 951 1000 ENSTTRP00000009529/1-1063 LMVQMPKETY LAHLPQDATT LESLVSAADR EMSAFPTNHE RINEKKLSST ENSP00000355396/1-1065 LMVQMPKETY LVHPPQDTTA LESLIPSANR EPSAFPTNHE RISEKKLPST ENSBTAP00000011238/1-1065 LMVQMPKETY LAHPPQDATT LESLVSSAER ERCAFPTNHE RMNEKKPSST bmy_17790T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU002693/1-1008 LMVQMPKETY LAHLPQDATT LESLVSSADR EMSAFPTNHE RINEKKLSST 1001 1050 ENSTTRP00000009529/1-1063 QKNSEPLQRP LWNISKEPGM PHPPLSQQSV FESPQLHQNE GLAESDPDCS ENSP00000355396/1-1065 QMSGETLQRP VWNINRELGL PHPPFSQQPV HESPQLHQNE GLAGREPDCS ENSBTAP00000011238/1-1065 RMSNETLQRP LWNVSREPGM PHPPFPQQSV LESSQLHQNE GLAESDPDCS bmy_17790T0/1-707 ---------- ---------- ---------- ---------- ---------- BACU002693/1-1008 QKSS------ --------GK GHSVFCYFGL FSLSPT---- ---------- 1051 1100 ENSTTRP00000009529/1-1063 TSPMPCHRLH DHTFDFSRTR NIQDGSEGT ENSP00000355396/1-1065 ASSMSCHRLQ DHAFDFSRTR NIQDGSEGT ENSBTAP00000011238/1-1065 TSPMPCHRLH DHTFDFSRTR NVHNGSEGT bmy_17790T0/1-707 ---------- ---------- --------- BACU002693/1-1008 ---------- ---------- ---------