KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:22 2014 Check: 00 .. Name: ENSTTRP00000014362/1-1316 Len: 1370 Check: 8470 Weight: 1.00 Name: ENSP00000251020/1-1324 Len: 1370 Check: 4740 Weight: 1.00 Name: ENSBTAP00000011264/1-1316 Len: 1370 Check: 2079 Weight: 1.00 Name: bmy_12755T0/1-1360 Len: 1370 Check: 9405 Weight: 1.00 Name: BACU001872/1-1298 Len: 1370 Check: 2640 Weight: 1.00 // 1 50 ENSTTRP00000014362/1-1316 MSRRKQAKPQ HFQSDPEVAS LPRRD----- ---------- ---------- ENSP00000251020/1-1324 MSRRKQAKPQ HFQSDPEVAS LPRRD----- ---------- ---------- ENSBTAP00000011264/1-1316 MSRRKQAKPQ HFQSDPEVAS LPRRD----- ---------- ---------- bmy_12755T0/1-1360 MSRRKQAKPQ HFQSDPEVAS LPRRDEYANP SQNTFGDDHT PFVQQKLVFP BACU001872/1-1298 ---------- -------MGS TRKTDE---- ---------- ---------- 51 100 ENSTTRP00000014362/1-1316 ---------- --------GD TEKGQPNRTT KSKDAHVCGR CCAEFFELSD ENSP00000251020/1-1324 ---------- --------GD TEKGQPSRPT KSKDAHVCGR CCAEFFELSD ENSBTAP00000011264/1-1316 ---------- --------GD TEKGQPNRTT KSKDAHVCGR CCAEFFELSD bmy_12755T0/1-1360 MLGKQWDAIL SLNRMLAWRD TEKGQPNRTT KSKDAHVCGR CCAEFFELSD BACU001872/1-1298 ---------- --------GD TEKGQPNRTT KSKDAHVCGR CCAEFFELSD 101 150 ENSTTRP00000014362/1-1316 LLLHKKNCTK NQLVLIVNES PASPPETF-S SSPTPDHPEE QMNDTANKTE ENSP00000251020/1-1324 LLLHKKNCTK NQLVLIVNEN PASPPETF-S PSPPPDNPDE QMNDTVNKTD ENSBTAP00000011264/1-1316 LLLHKKNCTK NQLVLIVNES PASPPETFSS PSPPPDHPQE QMNDTANKTE bmy_12755T0/1-1360 LLLHKKNCTK NQLVLIVNES PASPPETF-S PSPPPDHPEE QMNDTANKTE BACU001872/1-1298 LLLHKKNCTK NQLVLIVNES PASPPETF-S PSPTPDHPEE QMNDTANKTE 151 200 ENSTTRP00000014362/1-1316 QGDCSDLAEP HGPDREESME VEAPAASKGA SGPLSSGGDS SAPPSCSS-- ENSP00000251020/1-1324 QVDCSDLSEH NGLDREESME VEAPVANKSG SGTSSGSHSS TAPSSSSSSS ENSBTAP00000011264/1-1316 QGECSDLAEA QAPDREESME VEAPAAPKGA SGPPSSAGDS SVPPSCSS-- bmy_12755T0/1-1360 QGDCSDLAEP HGPDREESME VEAPVAHKGA SGPLSSGGDS SAPPSCSS-- BACU001872/1-1298 QGDCSDLAEP HGPDREESME VEAPVAHKGA SGPLSSGGDS SAPPSCSS-- 201 250 ENSTTRP00000014362/1-1316 ------GSSC PGTSAITTSL PQLGDLTTLG NFSVINSNVI IENLQSTKVA ENSP00000251020/1-1324 SSSGGGGSSS TGTSAITTSL PQLGDLTTLG NFSVINSNVI IENLQSTKVA ENSBTAP00000011264/1-1316 ------SSSG AGTSAITTSL PQLGDLTTLG NFSVINSNVI IENLQSTKVA bmy_12755T0/1-1360 ------GSSC TGTSAITTSL PQLGDLTTLG NFSVINSNVI IENLQSTKVA BACU001872/1-1298 ------GSSC TGTSAITTSL PQLGDLTTLG NFSVINSNVI IENLQSTKVA 251 300 ENSTTRP00000014362/1-1316 VAQFSQEARC SGASGGKLAV PALMDQLLAL QQQQIHQLQL IEQIRHQILL ENSP00000251020/1-1324 VAQFSQEARC GGASGGKLAV PALMEQLLAL QQQQIHQLQL IEQIRHQILL ENSBTAP00000011264/1-1316 VAQFSQEARC NGASGGKLAV PALMEQLLAL QQQQIHQLQL IEQIRHQILL bmy_12755T0/1-1360 VAQFSQEARC NGASGGKLAV PALMEQLLAL QQQQIHQLQL IEQIRHQILL BACU001872/1-1298 VAQFSQEARC NGASGGKLAV PALMEQLLAL QQQQIHQLQL IEQIRHQILL 301 350 ENSTTRP00000014362/1-1316 LASQNTDLPT SSSPSPGTVR TSANPLSTLS SHLSQQLAAA AGLAQSLASQ ENSP00000251020/1-1324 LASQNADLPT SSSPSQGTLR TSANPLSTLS SHLSQQLAAA AGLAQSLASQ ENSBTAP00000011264/1-1316 LASQNADLPT SSSPSPGTLR TSANPLSTLS SHLSQQLAAA AGLAQSLASQ bmy_12755T0/1-1360 LASQNTDLPT SSSPSPGTVR TSANPLSTLS SHLSQQLAAA AGLAQSLASQ BACU001872/1-1298 LASQNTDLPT SSSPSPGTVR TSANPLSTLS SHLSQQLAAA AGLAQSLASQ 351 400 ENSTTRP00000014362/1-1316 SASISGVKQL PPIQLPQSSS GNTIGPPHSG SSPSVHILAA AVPTPSSEKV ENSP00000251020/1-1324 SASISGVKQL PPIQLPQSSS GNTIIPSNSG SSPNMNILAA AVTTPSSEKV ENSBTAP00000011264/1-1316 SASISGVKQL PPIQLPQSSS GNTIAPPHSG SSPNVHILAA AVPTPSSEKV bmy_12755T0/1-1360 SASISGVKRL PPIQLPQSSS GNTIGPPHSG SSPSVHVLAA AVPTPSSEKV BACU001872/1-1298 SASISGVKRL PPIQLPQSSS GNTIGPPHSG SSPSIHVLAA AVPTPSSEKV 401 450 ENSTTRP00000014362/1-1316 ASSAGASHAH AGNPAVSASS SPAFAISSLL SPASNPLLPQ PAPANSVFPS ENSP00000251020/1-1324 ASSAGAS--H VSNPAVSSSS SPAFAISSLL SPASNPLLPQ QASANSVFPS ENSBTAP00000011264/1-1316 ASSAGTS--H TSNPAASASS SPAFAISSLL SPASNPLLPQ PAPANSVFPS bmy_12755T0/1-1360 ASSAGASHAH AGNPAVSASS SPAFAISSLL IPASNPLLPQ PAPANSVFPS BACU001872/1-1298 ASGAGASHAH AGNPAVSASS SPAFAISSLL SPASNPLLPQ PAPANSVFPS 451 500 ENSTTRP00000014362/1-1316 PLPNIGTTAE DLNSLSALAQ QRKSKPPNVT AFEAKSASDE AFFKHKCRFC ENSP00000251020/1-1324 PLPNIGTTAE DLNSLSALAQ QRKSKPPNVT AFEAKSTSDE AFFKHKCRFC ENSBTAP00000011264/1-1316 PLPNIGTTAE DLNPLSALAQ QRKSKPPNVT AFEAKSASDE AFFKHKCRFC bmy_12755T0/1-1360 PLPNIGTTAE DLNSLSALAQ QRKSKPPNVT AFEAKSASDE AFFKHKCRFC BACU001872/1-1298 PLPNIGTTAE DLNSLSALAQ QRKSKPPNVT AFEAKSASDE AFFKHKCRFC 501 550 ENSTTRP00000014362/1-1316 AKVFGSDSAL QIHLRSHTGE RPFKCNICGN RFSTKGNLKV HFQRHKEKYP ENSP00000251020/1-1324 AKVFGSDSAL QIHLRSHTGE RPFKCNICGN RFSTKGNLKV HFQRHKEKYP ENSBTAP00000011264/1-1316 AKVFGSDSAL QIHLRSHTGE RPFKCNICGN RFSTKGNLKV HFQRHKEKYP bmy_12755T0/1-1360 AKVFGSDSAL QIHLRSHTGE RPFKCNICGN RFSTKGNLKV HFQRHKEKYP BACU001872/1-1298 AKVFGSDSAL QIHLRSHTGE RPFKCNICGN RFSTKGNLKV HFQRHKEKYP 551 600 ENSTTRP00000014362/1-1316 HIQMNPYPVP EHLDNIPTST GIPYGMSIPP EKPVTSWLDT KPVLPTLTTS ENSP00000251020/1-1324 HIQMNPYPVP EHLDNIPTST GIPYGMSIPP EKPVTSWLDT KPVLPTLTTS ENSBTAP00000011264/1-1316 HIQMNPYPVP EHLDNIPTST GIPYGMSIPP EKPVTSWLDT KPVLPTLTTS bmy_12755T0/1-1360 HIQMNPYPVP EHLDNIPTST GIPYGMSIPP EKPVTSWLDT KPVLPTLTTS BACU001872/1-1298 HIQMNPYPVP EHLDNIPTST GIPYGMSIPP EKPVTSWLDT KPVLPTLTTS 601 650 ENSTTRP00000014362/1-1316 VGLPLPPTLP SLTPFIKTEE PAPIPISHSA ASPPGSVKSD SGAPEPASRN ENSP00000251020/1-1324 VGLPLPPTLP SLIPFIKTEE PAPIPISHSA TSPPGSVKSD SGGPESATRN ENSBTAP00000011264/1-1316 VGLPLPPTLP NLTPFIKTEE PAPIPISHSA ASPPGSVSSD SGAPEPAARN bmy_12755T0/1-1360 VGLPLPPTLP SLTPFIKTEE PAPIPISHSA ASPPGSVKSD SGASEPASRN BACU001872/1-1298 VGLPLPPT-- -LTPFIKTEE PAPIPISHSA ASPPGSVKSD SGAPEPASRN 651 700 ENSTTRP00000014362/1-1316 PGGLPEEAEA STGPPSSGKS EESGVVPSSA PTVSTGVLSS LASDVGP-GS ENSP00000251020/1-1324 LGGLPEEAEG STLPPSGGKS EESGMVTNSV PTASSSVLSS PAADCGPAGS ENSBTAP00000011264/1-1316 PGGLPEEAEG PTAPPPGGKS EESGVVPSSA SAPNACVLSS LASDGGP-GS bmy_12755T0/1-1360 PGGLPEEAEG STGPPSSDKS EESGVVPSSA PTVSTGVLSS LASDAGP-GS BACU001872/1-1298 PGGLPEEAEG SAGPPSSGKS EESGVVPSSA PAMSTGVLSS LASDVGP-GS 701 750 ENSTTRP00000014362/1-1316 ASTFTNPLLP LMSEQFKSKF PFGGLLDSAQ ASETSKLQQL VENIDKKATD ENSP00000251020/1-1324 ATTFTNPLLP LMSEQFKAKF PFGGLLDSAQ ASETSKLQQL VENIDKKATD ENSBTAP00000011264/1-1316 ASTFTNPLLP LMSEQFKAKF PFGGLLDSAQ ASETSKLQQL VENIDKKATD bmy_12755T0/1-1360 ASTFTNPLLP LMSEQFKAKF PFGGLLDSAQ ASETSKLQQL VENIDKKATD BACU001872/1-1298 ASTFTNPLLP LMSEQFKAKF PFGGLLDSAQ ASETSKLQQL VENIDKKATD 751 800 ENSTTRP00000014362/1-1316 PNECVICHRV LSCQSALKMH YRTHTGERPF KCKICGRAF- TKGNLKTHYS ENSP00000251020/1-1324 PNECIICHRV LSCQSALKMH YRTHTGERPF KCKICGRAFT TKGNLKTHYS ENSBTAP00000011264/1-1316 PNECIICHRV LSCQSALKMH YRTHTGERPF KCKICGRAFT TKGNLKTHYS bmy_12755T0/1-1360 PNECIICHRV LSCQSALKMH YRTHTGERPF KCKICGRAFT TKGNLKTHYS BACU001872/1-1298 PNECIICHRV LSCQSALKMH YRTHTGERPF KCKICGRAFT TKGNLKTHYS 801 850 ENSTTRP00000014362/1-1316 VHRAMPPLRV QHSCPICQKK FTNXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 VHRAMPPLRV QHSCPICQKK FTNAVVLQQH IRMHMGGQIP NTPVPDSYSE ENSBTAP00000011264/1-1316 VHRAMPPLRV QHSCPICQKK FTNAVVLQQH IRMHMGGQIP NTPVPDSYPE bmy_12755T0/1-1360 VHRAMPPLRV QHSCPICQKK FTNAVVLQQH IRMHMGGQIP NTPVPDSYPE BACU001872/1-1298 VHRAMPPLRV QHSCPICQKK FTNAVVLQQH IRMHMGGQIP NTPVPDSYPE 851 900 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 SMESDTGSFD EKNFDDLDNF SDENMEDCPE GSIPDTPKSA DASQDSLSSS ENSBTAP00000011264/1-1316 SMESDTGSFD EKNFDDLDTF SDENMEDCPE GSIPDTPKSA DASQDSLSSS bmy_12755T0/1-1360 SMESDTGSFD EKNFDDLDNF SDENMEDCPE GSIPDTPKSA DASQDSLSSS BACU001872/1-1298 SMESDTGSFD EKNFDDLDNF SDENMEDCPE GSIPDTPKSA DASQDSLSSS 901 950 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 PLPLEMSSIA ALENQMKMIN AGLAEQLQAS LKSVENGSIE GDVLTNDSSS ENSBTAP00000011264/1-1316 PLPLEMSSIA ALENQMKMIN AGLAEQLQAS LKSVENGSVE GDVLTNDSSS bmy_12755T0/1-1360 PLPLEMSSIA ALENQMKMIN AGLAEQLQAS LKSVENGSVE GDVLTNDSSS BACU001872/1-1298 PLPLEMSSIA ALENQMKMIN AGLAEQLQAS LKSVENGSVE GDVLTNDSSS 951 1000 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 VGGDMESQSA GSPAISESTS SMQALSPSNS TQEFHKSPSI EEKPQRAVPS ENSBTAP00000011264/1-1316 VGGDMESQSA GSPAISESTS SMQALSPSNS TQEFHKSPSA EEKLQRAGAS bmy_12755T0/1-1360 VGGDMESQSA GSPAISESTS SMQALSPSNS TQEFHKSPSA EEKPQRAGAS BACU001872/1-1298 VGGDMESQSA GSPAISESTS SMQALSPSNS TQEFHKSPSA EEKPQRAGAS 1001 1050 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 EFANGLSPTP VNGGALDLTS SHAEKIIKED SLGILFPFRD RGKFKNTACD ENSBTAP00000011264/1-1316 EFANGLSPAP VNGGALDLTS SHTEKIIKED SLGILFPFRD RGKFKNTACD bmy_12755T0/1-1360 DFANGLSPTP VNGGALDLTS SHTEKIIKED SLGILFPFRD RGKFKNTACD BACU001872/1-1298 DFANGLSPTP VNGGALDLTS SHTEKIIKED SLGILFPFRD RGKFKNTACD 1051 1100 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 ICGKTFACQS ALDIHYRSHT KERPFICTVC NRGFSTKGNL KQHMLTHQMR ENSBTAP00000011264/1-1316 ICGKTFACQS ALDIHYRSHT KERPFICTVC NRGFSTKGNL KQHMLTHQMR bmy_12755T0/1-1360 ICGKTFACQS ALDIHYRSHT KERPFICTVC NRGFSTKGNL KQHMLTHQMR BACU001872/1-1298 ICGKTFACQS ALDIHYRSHT KERPFICTVC NRGFSTKGNL KQHMLTHQMR 1101 1150 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 DLPSQLFEPS SNLGPNQNSA VIPANSLSSL IKTEVNGFVH VSPQDSKDTP ENSBTAP00000011264/1-1316 DLPSQLFEPS SSLGPNQNSA VIPANSLASL IKTEVNGFVH VTPQDSKDTP bmy_12755T0/1-1360 DLPSQLFEPS SNLGPNQNSA VIPANSLVSL IKTEVNGFVH VTPQDSKDTP BACU001872/1-1298 DLPSQLFEPS SNLGPNQNSA VIPANSLASL IKTEVNGFVH VTPQDSKDTP 1151 1200 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000251020/1-1324 TSHVPSGPLS SSATSPVLLP ALPRRTPKQH YCNTCGKTFS SSSALQIHER ENSBTAP00000011264/1-1316 TSHVPSGPLS SSATSPVLLP ALPRRTPKQH YCNTCGKTFS SSSALQIHER bmy_12755T0/1-1360 TSHVPSGPLS SSATSPVLLP ALPRRTPKQH YCNTCGKTFS SSSALQIHER BACU001872/1-1298 TSHVPSGPLS SSATSPVLLP ALPRRTPKQH YCNTCGKTFS SSSALQIHER 1201 1250 ENSTTRP00000014362/1-1316 XXXXXXXXXX XXXXXXXXXX XXXXVHMGTH MWNSAPARRG RRLSVDGPMT ENSP00000251020/1-1324 THTGEKPFAC TICGRAFTTK GNLKVHMGTH MWNSTPARRG RRLSVDGPMT ENSBTAP00000011264/1-1316 THTGEKPFAC TICGRAFTTK GNLKVHMGTH MWNSTPARRG RRLSVDGPMT bmy_12755T0/1-1360 THTGEKPFAC TICGRAFTTK GNLKVHMGTH MWNSTPARRG RRLSVDGPMT BACU001872/1-1298 THTGEKPFAC TICGRAFTTK GNLKVHMGTH MWNSTPARRG RRLSVDGPMT 1251 1300 ENSTTRP00000014362/1-1316 FLGGNPVKFP EMFQKDLAAR SGSGDPSSFW NQYAAALSNG LAMKANEISV ENSP00000251020/1-1324 FLGGNPVKFP EMFQKDLAAR SGSGDPSSFW NQYAAALSNG LAMKANEISV ENSBTAP00000011264/1-1316 FLGGNPVKFP EMFQKDLAAR SGSGDPSSFW NQYAAALSNG LAMKANEISV bmy_12755T0/1-1360 FLGGNPVKFP EMFQKDLVAR SGSGDPSSFW NQYAAALSNG LAMKANEISV BACU001872/1-1298 FLGGNPVKFP EMFQKDLVAR SGSGDPSSFW NQYAAALSNG LAMKANEISV 1301 1350 ENSTTRP00000014362/1-1316 IQNGGIPPIP GSLGSGSSSP ISGLTGNLEK LQNSEPSAPL AGLEKMASSE ENSP00000251020/1-1324 IQNGGIPPIP GSLGSGNSSP VSGLTGNLER LQNSEPNAPL AGLEKMASSE ENSBTAP00000011264/1-1316 IQNGGIPPIP GSLGSGSSSP ISGLTGNLEK LQNSEPSAPL AGLEKMASSE bmy_12755T0/1-1360 IQNGGIPPIP GSLGSGSSSP ISGLTGNLEK LQNSEPSAPL AGLEKMASSE BACU001872/1-1298 IQNGGIPPIP GSLGSGSSSP ISGLTGNLEK LQNSEPSAPL AGLEKMASSE 1351 1400 ENSTTRP00000014362/1-1316 NGTNFRFTRF VEDSKEIVTS ENSP00000251020/1-1324 NGTNFRFTRF VEDSKEIVTS ENSBTAP00000011264/1-1316 NGTNFRFTRF VEDSKEIVTS bmy_12755T0/1-1360 NGTNFRFTRF VEDSKEIVTS BACU001872/1-1298 NGTNFRFTRF VEDSKEIVTS