KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:24 2014 Check: 00 .. Name: ENSTTRP00000007892/1-479 Len: 698 Check: 9404 Weight: 1.00 Name: bmy_17412T0/1-401 Len: 698 Check: 2232 Weight: 1.00 Name: ENSBTAP00000011279/1-463 Len: 698 Check: 8684 Weight: 1.00 Name: ENSP00000431603/1-479 Len: 698 Check: 958 Weight: 1.00 Name: BACU002063/1-666 Len: 698 Check: 5042 Weight: 1.00 // 1 50 ENSTTRP00000007892/1-479 MVHSSMGAPE IRMSKPLEAE KQGLDSPSEH TDTERNGPDT NHQNPQNKTS bmy_17412T0/1-401 ---------- ---------- --MPACPVAH P--------- ---------- ENSBTAP00000011279/1-463 QVHQTVGAPE IRMSKPLEAE KQGLDSPSEH PDTERNGPDT NHQNPQNKTS ENSP00000431603/1-479 MVHSSMGAPE IRMSKPLEAE KQGLDSPSEH TDTERNGPDT NHQNPQNKTS BACU002063/1-666 ---------- --MSKPLEAE KQGLDSPSEH TDTERNGPDT NHQNPQNKTS 51 100 ENSTTRP00000007892/1-479 PFSVSPTGPS TKIKAEDPSS DSAPAAPLPP QPVQPHLPQA QLMLTGSQLA bmy_17412T0/1-401 -----PGAQA --MQREEPGQ DSGCRSVHPP -PCQ------ ---------- ENSBTAP00000011279/1-463 PFSVSPTGPS TKIKAEDPSG DSAPAAPPPP QPAQPHLPQA QLMLTGSQLA ENSP00000431603/1-479 PFSVSPTGPS TKIKAEDPSG DSAPAAPLPP QPAQPHLPQA QLMLTGSQLA BACU002063/1-666 PFPVSPTGPS TKIKAEDPSS DSAPAAPLPP QPAQPHLPQA QLMLTGSQLA 101 150 ENSTTRP00000007892/1-479 G--------- ---------- ---------- ---------- ---------- bmy_17412T0/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011279/1-463 G--------- ---------- ---------- ---------- ---------- ENSP00000431603/1-479 G--------- ---------- ---------- ---------- ---------- BACU002063/1-666 GLTALMPAQQ QLLLQQAQAQ LLAAAAAAAS SSSSSSSSST SQPPASSGGG 151 200 ENSTTRP00000007892/1-479 ---------- ---------- --------DI QQLLQLQQLV LVPGHHLQPP bmy_17412T0/1-401 ---------- ---------- --------DI QQLLQLQQLV LVPGHHLQPP ENSBTAP00000011279/1-463 ---------- ---------- --------DI QQLLQLQQLV LVPGHHLQPP ENSP00000431603/1-479 ---------- ---------- --------DI QQLLQLQQLV LVPGHHLQPP BACU002063/1-666 DLPPPQPASQ PPGTPQLTLS QPIQLTAQDI QQLLQLQQLV LVPGHHLQPP 201 250 ENSTTRP00000007892/1-479 AQFLLPQAQQ SQPGLLPTPN LFQLPQQTQG ALLTSQPRAG LPT------- bmy_17412T0/1-401 AQFLLPQAQQ SQPGLLPTPN LFQLPQQTQG ALLTSQPRAG LPT------- ENSBTAP00000011279/1-463 AQFLLPQAQQ SQPGLLPTPN LFQLPQQTQG ALLTSQPRAG LPTQVELHPG ENSP00000431603/1-479 AQFLLPQAQQ SQPGLLPTPN LFQLPQQTQG ALLTSQPRAG LPT------- BACU002063/1-666 AQFLLPQAQQ SQPGLLPTPN LFQLPQQTQG ALLTSQPRAG LPT------- 251 300 ENSTTRP00000007892/1-479 ---------- --QAVTRPTL PDPHLSHPQP PKCLEPPSHP EEPSDLEELE bmy_17412T0/1-401 ---------- --QAVTRPTL PDPHLSHPQP PKCLEPPSHP EEPSDLEELE ENSBTAP00000011279/1-463 PRACIPPTCP PHQAVTRPTL PDPHLSHPQP PKCLEPPSHP EEPSDLEELE ENSP00000431603/1-479 ---------- --QAVTRPTL PDPHLSHPQP PKCLEPPSHP EEPSDLEELE BACU002063/1-666 ---------- --QAVTRPTL PDPHLSHPQP PKCLEPPSHP EEPSDLEELE 301 350 ENSTTRP00000007892/1-479 QFARTFKQRR IKLGFTQGDV GLAMGKLYGN DFSQTTISRF EALNLSFKNM bmy_17412T0/1-401 QFARTFKQRR IKLGFTQGDV GLAMGKLYGN DFSQTTISRF EALNLSFKNM ENSBTAP00000011279/1-463 QFARTFKQRR IKLGFTQGDV GLAMGKLYGN DFSQTTISRF EALNLSFKNM ENSP00000431603/1-479 QFARTFKQRR IKLGFTQGDV GLAMGKLYGN DFSQTTISRF EALNLSFKNM BACU002063/1-666 QFARTFKQRR IKLGFTQGDV GLAMGKLYGN DFSQTTISRF EALNLSFKNM 351 400 ENSTTRP00000007892/1-479 CKLKPLLEKW LN-DAETMSV DSSLPSPNQL SSPSLGFDGL PGRRRKKRTS bmy_17412T0/1-401 CKLKPLLEKW LN-DAETMSV DSSLPSPNQL SSPSLGFDGL PGRRRKKRTS ENSBTAP00000011279/1-463 CKLKPLLEKW LNDDTETMSV DSSLPSPNQL SSPSLGFDGL PGRRRKKRTS ENSP00000431603/1-479 CKLKPLLEKW LN-DAETMSV DSSLPSPNQL SSPSLGFDGL PGRRRKKRTS BACU002063/1-666 CKLKPLLEKW LN-DAETMSV DSSLPSPNQL SSPSLGFDGL PGRRRKKRTS 401 450 ENSTTRP00000007892/1-479 IETNVRFALE KSFLANQKPT SEEILLIAEQ LHMEKEVIRV WFCNRRQKEK bmy_17412T0/1-401 IETNVRFALE KSFLANQKPT SEEILLIAEQ LHMEKEVIRV WFCNRRQKEK ENSBTAP00000011279/1-463 IETNVRFALE KSFLANQKPT SEEILLIAEQ LHMEKEVIRV WFCNRRQKEK ENSP00000431603/1-479 IETNVRFALE KSFLANQKPT SEEILLIAEQ LHMEKEVIRV WFCNRRQKEK BACU002063/1-666 IETNVRFALE KSFLANQKPT SEEILLIAEQ LHMEKEVIRV WFCNRRQKEK 451 500 ENSTTRP00000007892/1-479 RINPCSAAPM LPSPGKPASY SPHLVTPQGG AGTLPLSQAS SSLSTTXXXX bmy_17412T0/1-401 RINPCSAAPM LPSPGKPASY SPHLVTPQGG AGTLPLSQAS SSLSTTVTTL ENSBTAP00000011279/1-463 RINPCSAAPM LPSPGKPASY SPHLVTPQGG AGTLPLSQAS SSLSTTVTTL ENSP00000431603/1-479 RINPCSAAPM LPSPGKPASY SPHMVTPQGG AGTLPLSQAS SSLSTTVTTL BACU002063/1-666 RINPCSAAPM LPSPGKPASY SPHLVTPQGG AGTLPLSQAS SSLSTTVTTL 501 550 ENSTTRP00000007892/1-479 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_17412T0/1-401 SSAVGTLHPS RTAGGGGAGG GAVPPLNSIP SVTPPPPATT NSTNPSPQGS ENSBTAP00000011279/1-463 SSAVGTLHPS RTAGGGGAGW GARPALHTPA RTYPPPPSRT ---------- ENSP00000431603/1-479 SSAVGTLHPS RTAGGGGGGG GAAPPLNSIP SVTPPPPATT NSTNPSPQGS BACU002063/1-666 SSAVGTLHPS RTAGGGGGGV GAAPPLNSIP SVTPPPPATT NSTNPSPQGS 551 600 ENSTTRP00000007892/1-479 XXXXXXXXXX XXXX------ -----PGLWW N--------- ---------- bmy_17412T0/1-401 HSAIGLSGLN PSTG------ ---------- ---------- ---------- ENSBTAP00000011279/1-463 ---------- ---------- ---------- ---------- ---------- ENSP00000431603/1-479 HSAIGLSGLN PSTG------ -----PGLWW N--------- ---------- BACU002063/1-666 HSAIGLSGLN PSTGSTMVGL SSGLSPALMS NNPLATIQAL ASGGTLPLTS 601 650 ENSTTRP00000007892/1-479 ---------- ---PAPYQP- ---------- ---------- ---------- bmy_17412T0/1-401 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011279/1-463 ---------- ---------- ---------- ---------- ---------- ENSP00000431603/1-479 ---------- ---PAPYQP- ---------- ---------- ---------- BACU002063/1-666 LDSSGNLVLG AAGAAPGSPG LVTSSLFLNH AGLPLLSAPP GVGLVSAAAA 651 700 ENSTTRP00000007892/1-479 ---------- ---------- ---------- ---------- -------- bmy_17412T0/1-401 ---------- ---------- ---------- ---------- -------- ENSBTAP00000011279/1-463 ---------- ---------- ---------- ---------- -------- ENSP00000431603/1-479 ---------- ---------- ---------- ---------- -------- BACU002063/1-666 AVAASISSKS PGLSSSSSSS SSSSSTCSEA AAQTPGGPGG PEVGSKPE