KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:26 2014 Check: 00 .. Name: ENSP00000280904/1-901 Len: 914 Check: 5906 Weight: 1.00 Name: ENSBTAP00000011306/1-909 Len: 914 Check: 7138 Weight: 1.00 Name: ENSTTRP00000006474/1-898 Len: 914 Check: 6469 Weight: 1.00 Name: bmy_18606T0/1-910 Len: 914 Check: 2024 Weight: 1.00 Name: BACU001566/1-870 Len: 914 Check: 8354 Weight: 1.00 // 1 50 ENSP00000280904/1-901 MEAARPSGSW NGALCRLLLL TLAILIFASD ACKNVTLHVP SKLDAEKLVG ENSBTAP00000011306/1-909 MAPARAPGSP SGALCRQLLL TLAILTFACD ACKTVTLHVP AKLDAEKFIG ENSTTRP00000006474/1-898 MAAARPTGSA SGALCWQLLL TLAILTFACD ACKTVTLHVP SKLDAVKYIG bmy_18606T0/1-910 MAAARPTGSA SGALCRQLLL TLTILTFACD ACKTVTLHVP SKLDAGKFIG BACU001566/1-870 MAAARPTGSA SGALCRQLLL TLTILTFACD ACKTVTLHVP SKLDAGKFIG 51 100 ENSP00000280904/1-901 RVNLKECFTA ANLIHSSDPD FQILEDGSVY TTNTILLSSE KRSFTILLSN ENSBTAP00000011306/1-909 RVNLKECFKS ATLIHSSDPD FQILEDGSVY TTHAILLSSE KSSFTILLSN ENSTTRP00000006474/1-898 RVNLKECFKS ANLIHSSDPD FQILEDGSVY TTNAILLSSA KRSFTILLSN bmy_18606T0/1-910 RVDLKECFKS ANLIHSSDPD FQILEDGSVY TTNAILLSSA KRSFTLLLSN BACU001566/1-870 RVNLKECFKS ANLIHSSDPD FQILEDGSVY TTNAILLSSA KRSFTLLLSN 101 150 ENSP00000280904/1-901 TENQEKKKIF VFLEHQTKVL KKRHTKEKVL RRAKRRWAPI PCSMLENSLG ENSBTAP00000011306/1-909 TETQEEKEIL VLLEHQTKVL KKRHSQEKVL RRAKRRWAPI PCSVPENSLG ENSTTRP00000006474/1-898 TETQEEKKIL VLLEQQTKVL RKRRSQEKVL IRAKRRWAPI PCSVSENSLG bmy_18606T0/1-910 TETQEEKKIL VLLEQQTKVL RKRRSQEKVL IRAKRRWAPI PCSVSENSLG BACU001566/1-870 TETQEEKKIL VLLEQQTK-- ---------- ---------- ---------- 151 200 ENSP00000280904/1-901 PFPLFLQQVQ SDTAQNYTIY YSIRGPGVDQ EPRNLFYVER DTGNLYCTRP ENSBTAP00000011306/1-909 PFPLFLQQIQ SDTAQNYTIY YSISGPGVDK EPRNLFYVER DTGNLFCTAS ENSTTRP00000006474/1-898 PFPLFLQQIQ SDTAQNYTIY YSISGPGVDK EPLNLFYVER DTGNLFCTRP bmy_18606T0/1-910 PFPLFLQQIQ SDTAQNYTIY YSISGPGVDK EPLNLFYVER DTGNLFCTRP BACU001566/1-870 --------IQ SDTAQNYTIY YSISGPGVDK EPLNLFYVER DTGNLFCTRP 201 250 ENSP00000280904/1-901 VDREQYESFE IIAFATTPDG YTPELPLPLI IKIEDENDNY PIFTEETYTF ENSBTAP00000011306/1-909 IDRETYPLFE LVAFATTPDG YTPEYPLTLV IRIEDENDNA PIFTETSYSF ENSTTRP00000006474/1-898 VDREMYPSFE LVAFATTKDG YTPEYPLTLL IRIEDENDNF PIFTETTYIF bmy_18606T0/1-910 VDREKYPSFE LVAFATTQDG YTPEYPLTLL IRIEDENDNF PIFTETTYIF BACU001566/1-870 VDREKYPSFE LVAFATTQDG YTPEYPLTLL IRIEDENDNF PIFTETSYVF 251 300 ENSP00000280904/1-901 TIFENCRVGT TVGQVCATDK DEPDTMHTRL KYSIIGQVPP SPTLFSMHPT ENSBTAP00000011306/1-909 EVFENSKVGT TVGQVCATDQ DEPDTLHTRL KYSIIEQFPA LPTLFSMHPT ENSTTRP00000006474/1-898 NVTENCRVGT TVGQVCATDK DEPDTLHTRL MYSIIEQLPA SPTLFFMQPA bmy_18606T0/1-910 NVSENCRVGT TVGQVCATDK DEADTLHTRL KYSIIEQFPA SPTLFSMHPT BACU001566/1-870 NVFENCRVGT TVGQVCATDK DEADTLHTRL RYSIIEQFPA SPTLFSMHPT 301 350 ENSP00000280904/1-901 TGVITTTSSQ LDRELIDKYQ LKIKVQDMDG QYFGLQTTST CIINIDDVND ENSBTAP00000011306/1-909 TGVITTSSSK LDRELIDKYQ LKIKVQDMDG QYFGLQTTAI CIINIEDVND ENSTTRP00000006474/1-898 TGVITTTSSR LDREVTDKYQ LKIKVQDMDG QYFGLQTTAT CIINIGDVND bmy_18606T0/1-910 TGVITTSSSQ LDRELIDKYQ LKIKVQDMDG QYFGLQTTAA CIINIEDVND BACU001566/1-870 TGVITTSSSR LDRELIDKYR LKIKVQDMDG QYFGLQTTAA CIINIEDVND 351 400 ENSP00000280904/1-901 HLPTFTRTSY VTSVEENTVD VEILRVTVED KDLVNTANWR ANYTILKGNE ENSBTAP00000011306/1-909 NLPTFTRSSY VASVEENRID VEILRVAVRD KDLINTANWR ANYTILKGNE ENSTTRP00000006474/1-898 NLPTFNRLSY EVSVEENRVD VEILRVAVTD KDLINTANWR ANYTILKGNE bmy_18606T0/1-910 NLPTFTRSSY VTSVEENRID VEILRVAVED KDLINTSNWR ANYTILKGNE BACU001566/1-870 NLPTFTRSSY VTSVEENKID VEILRVAVED KDLINTSNWR ANYTILKGNE 401 450 ENSP00000280904/1-901 NGNFKIVTDA KTNEGVLCVV KPLNYEEKQQ MILQIGVVNE APFSREASPR ENSBTAP00000011306/1-909 DGNFKIVTDS QTNEGVLCVV KPLNYEEKQQ VTLEIGVVNE APYT--GTSR ENSTTRP00000006474/1-898 NGNFKIVTDP KTNEGVLCVV KPLNYEEKQE MTLQISVVNE APNF--ASSR bmy_18606T0/1-910 NGNFKIVTDP KTNEGVLSVV KPLNYEEKQE VTLQISVVNE APYS--SSSR BACU001566/1-870 NGNFKIVTDP KTNEGVLSVV KPLNYEEKQE VTLQISVVNE APYS--SSSR 451 500 ENSP00000280904/1-901 SAMSTATVTV NVEDQDEGPE CNPPIQTVRM KENAEVGTTS NGYKAYDPET ENSBTAP00000011306/1-909 STTNMATVTV NVQNQDEGPE CDPRVQTVRI KENVPVGTKT IGYKAYDPET ENSTTRP00000006474/1-898 STGSMATVTV RVKNQDEGPE CRPAVQIVRI KENVPVSTKD IGYKAHDPET bmy_18606T0/1-910 STVNMVTVTV NVQNQDEGPE CSPAVQIVRI KENVPVSTKV SGYKAHDPET BACU001566/1-870 STVNVVAVTV NVQNQDEGPE CIPAVQIVRI KENVPVSTKV SGYKARDPET 501 550 ENSP00000280904/1-901 RSSSGIRYKK LTDPTGWVTI DENTGSIKVF RSLDREAETI KNGIYNITVL ENSBTAP00000011306/1-909 GSSSGIRYKK SSDPEGWVDV DENSGVITIL KRLDREA--- RSGVYNISII ENSTTRP00000006474/1-898 NSSSGIRYEK LSDPEGWVSV DENSGSITIL RSLDREAKTI RNGIYNITIL bmy_18606T0/1-910 SSSSGISYKK LSDPEGWVTV DENSGSITTF RRLDREAKTV RNGIYNITIL BACU001566/1-870 SSSSGISYKK LSDPEGWVTV DENSGSITTS RSLDREAKTI RNGIYNITIL 551 600 ENSP00000280904/1-901 ASDQGGRTCT GTLGIILQDV NDNSPFIPKK TVIICKPTMS SAEIVAVDPD ENSBTAP00000011306/1-909 ASDKDGRTCN GVLGIVLEDV NDNGPVIRQW TVVICKTVMS SAEIVAVDPD ENSTTRP00000006474/1-898 ASDEGKRTCT GTLGIILEDV NDNGPFIPER TVIMCKTVMS SAEIVAVDPD bmy_18606T0/1-910 ASDKDGRTCT GTLGIKLEDV NDNSPFIPQR TVIICKTVVS SAEIVAVDPD BACU001566/1-870 ASDKDKRTCT GTLGIKLEDV NDNGPLIPQR TVIICKTVMS SAEIVAVDPD 601 650 ENSP00000280904/1-901 EPIHGPPFDF SLES-STSEV QRMWRLKAIN DTAARLSYQN DPPFGSYVVP ENSBTAP00000011306/1-909 EPIHGPPFDF SLEGVSDSEV LRMWRLTKVN DTAARLSYLN DLRFGKYTVP ENSTTRP00000006474/1-898 EPTHGPPFDF SLEGVSDSEV LRMWRLTKMN DTAARLSYLN DPQFGRYTVP bmy_18606T0/1-910 EPIHGPPFDF SLDGVSDSEV FRMWRLTKIN DTATRLSYLN DPPFGRYTVP BACU001566/1-870 EPIHGPPFEF SLDGASDSEA LRMWRLTRIN DTAARLSYLN DPLFGRYTVP 651 700 ENSP00000280904/1-901 ITVRDRLGMS SVTSLDVTLC DCITENDCTH RVDPRIGGGG VQLGKWAILA ENSBTAP00000011306/1-909 VRVTDRLGQS LVTQLVVILC DCVTPNDCSL PPVPRTSNGE VILGKWAILA ENSTTRP00000006474/1-898 VRVADRLGQS LVTQLDVMLC DCVTRSDCKI PS-PLRTAKG LMLGKWAVLA bmy_18606T0/1-910 VRVTDRLDQS LVTQLNVILC DCVTPSDCNI ESAPNIASGG LILGKWAILA BACU001566/1-870 VRVADRLDQS LVTYLNVILC DCVTPSDCNI HIAPYPASGR LILGKWAILA 701 750 ENSP00000280904/1-901 ILLGIALLFC ILFTLVCGA- SGTSKQPKVI PDDLAQQNLI VSNTEAPGDD ENSBTAP00000011306/1-909 ILLGIALLFC ILFTLVCGAT TGADKKPKVF PDDLAQQNLI VSNTEAPGDD ENSTTRP00000006474/1-898 ILLGIALLFC VLFTLVCGA- TGAAKKPKVF PDDLAQQNLI VSNTEAPGDD bmy_18606T0/1-910 ILLGIALLFC ILFTLVCGA- TGAAKKPKVL PDDLAQQNLI VSNTEAPGDD BACU001566/1-870 ILLGIALLFC ILFTLVCGA- TGAAKKPKVF PDDLAQQNLI VSNTEAPGDD 751 800 ENSP00000280904/1-901 KVYSANGFTT QTVGASAQGV CGTVGSGIKN GGQETIEMVK GGHQTSESCR ENSBTAP00000011306/1-909 KVYSTNDFTT HAVGGSAHGI GGTLGSRVKN GGQETIEMVK GGHQTMESCQ ENSTTRP00000006474/1-898 KVYSTNGFTT HTAGGFTQGI CSTPGSGVKN GGQETIEMVK GG-QTIESCQ bmy_18606T0/1-910 KMYSTNGFTT HTAGGSTQGI CNTLGSRVKN GGQETIEMVK GG-QTIESCQ BACU001566/1-870 KMYSTNGFTT HTAGGSTQGI CSTLGSGVKN GGQETIEMVK GG-QNIESCQ 801 850 ENSP00000280904/1-901 GAGHH----- ------HTLD SCRGGHTEVD NCRYTYSEWH SFTQPRLGEK ENSBTAP00000011306/1-909 ETGHHHTLER CKEGGQHTLD SCRGGPVATD NCKYTYSEWY TYTQPRLGEK ENSTTRP00000006474/1-898 EAGHH----- ------HTLD SCRGGQVEAD NCRYAYSDWY TYTQPRLGEK bmy_18606T0/1-910 EAGHHHTLEV CKGGGQHTLD SCRGGQVEAD NCRYPYSEWY TYTQPRLGER BACU001566/1-870 EAGHHHTLEM CKGGGQHTLD SCRGGQVEAD NCRYAYSEWY TYAQPRLGEK 851 900 ENSP00000280904/1-901 VYLCNQDENH KHAQDYVLTY NYEGRGSVAG SVGCCSERQE EDGLEFLDNL ENSBTAP00000011306/1-909 VQQCDQDNTH MQAQDYVLTY NYEGRGSAAG SVGCCSERQE EDGLEFLDHL ENSTTRP00000006474/1-898 VQQCNQDNSH THAQDYVRTY NYEGKGSAAG SVGCCSERQE EDGLEFLDHL bmy_18606T0/1-910 IQQCNQDNSH MHAQDYVRTY NYEGKGSAAG SVGCCSERQE EDGLEFLDHL BACU001566/1-870 VQQCNQDNSH MHAQDYVRTY NYEGKGSAAG SVGCCSERQE EDGLEFLDHL 901 950 ENSP00000280904/1-901 EPKFRTLAEA CMKR ENSBTAP00000011306/1-909 GPKFRTLAET CMKR ENSTTRP00000006474/1-898 EPKFRTLAEA CMKR bmy_18606T0/1-910 EPKFRTLAET CMKR BACU001566/1-870 EPKFRTLAET CMKR