KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:43:26 2014 Check: 00 ..
Name: ENSTTRP00000013244/1-356 Len: 535 Check: 9802 Weight: 1.00
Name: bmy_07713T0/1-452 Len: 535 Check: 849 Weight: 1.00
Name: BACU010767/1-502 Len: 535 Check: 9072 Weight: 1.00
Name: ENSBTAP00000011311/1-506 Len: 535 Check: 4792 Weight: 1.00
Name: ENSP00000317175/1-506 Len: 535 Check: 3378 Weight: 1.00
//
1 50
ENSTTRP00000013244/1-356 ---------- ---------- ---------- ---------- ----------
bmy_07713T0/1-452 ---------- ---------- ---------- ---------- ----------
BACU010767/1-502 MFTSKSNSVS PSPSLEQADS DALDISTKVQ LYGVLWKRPF GRPSAKWSRR
ENSBTAP00000011311/1-506 MFTSKSNSVS PSPSLEQADS DALDISTKVQ LYGVLWKRSF GRPSAKWSRR
ENSP00000317175/1-506 MFTSKSNSVS PSPSLEQADS DALDISTKVQ LYGVLWKRPF GRPSAKWSRR
51 100
ENSTTRP00000013244/1-356 ---------- ---------- ---------- ---------- ----------
bmy_07713T0/1-452 FFIIKESFLL YYSESEKKSF ETNKYFNIHP KGVIPLGGCL VEAKEEPSMP
BACU010767/1-502 FFIIKESFLL YYSESEKKSF ETNKYFNIHP KGVIPLGGCL VEAKEEPSMP
ENSBTAP00000011311/1-506 FCIIKESFLL YYSESEKKSF ETNKYFNIHP KGVIPLGGCL VEAKEEPSMP
ENSP00000317175/1-506 FFIIKESFLL YYSESEKKSF ETNKYFNIHP KGVIPLGGCL VEPKEEPSMP
101 150
ENSTTRP00000013244/1-356 ---------- ---------- ---------- ---------- ----------
bmy_07713T0/1-452 YAMKISHQDF HGNILLAAES EFEQTQWLEM LQESGKVTWK NAQLGEAMIK
BACU010767/1-502 YAMKISHQDF HGNILLAAES EFEQTQWLEM LQESGKVTWK NAQLGEAMIK
ENSBTAP00000011311/1-506 YAMKISHQDF HGTILLAAES EFEQTQWLEM LQESGKVTWK NAQLGEAMIK
ENSP00000317175/1-506 YAMKISHQDF HGNILLAAES EFEQTQWLEM LQESGKVTWK NAQLGEAMIK
151 200
ENSTTRP00000013244/1-356 ---------- ---------- MEETEELCLQ REQREELE-L IQVLEAEKQQ
bmy_07713T0/1-452 SLEAQGLQLA KEKQEYLDKL MEETEELCLQ REQREELERL NQVLEAEKQQ
BACU010767/1-502 SLEAQGLQLA KEKQEYLDKL MEETEELCLQ REQREELERL NQVLEAEKQQ
ENSBTAP00000011311/1-506 SLEAQGLQLA KEKQEYLDKL MEETEELCLQ REQREALERL NQVLEAEKQQ
ENSP00000317175/1-506 SLEAQGLQLA KEKQEYLDKL MEETEELCLQ REQREELERL NQVLEAEKQQ
201 250
ENSTTRP00000013244/1-356 FEEVVQELKM EQEQIKRELE LTARCLKGVE QEKKELRRLT ESLQQMLEEL
bmy_07713T0/1-452 FEEVVQELKM EQEQIKRELE LTARCLKGVE QEKKELRHLT ESLQQTLEEL
BACU010767/1-502 FEEVVQELKM EQEQIKRELE LTARCLKGVE QEKKELRHFT ESLQQTLEEL
ENSBTAP00000011311/1-506 FEEVVQELRM EQEQIKRELE LTARCLKGVE QEKKELRHFT ESLQKTLEEL
ENSP00000317175/1-506 FEEVVQELRM EQEQIKRELE LTARCLKGVE QEKKELRHLT ESLQQTLEEL
251 300
ENSTTRP00000013244/1-356 SIEKKKTLEM LEENENQLQT LANQSEEPSL SGGLHSNLRQ IEEKMQQLLE
bmy_07713T0/1-452 SIEKKKTLEM LEENENQLQT LANQSEQPPP SGGLHSNLRQ IEEKMQQLLE
BACU010767/1-502 SIEKKKTLEM LEENENQLQT LANQSEQPPP SGGLHSNLRQ IEEKMQQLLE
ENSBTAP00000011311/1-506 SIEKKKTLEM LEENENQLQT LANQSEQPPP SGGLHSNLRQ IEEKMQQLLE
ENSP00000317175/1-506 SIEKKKTLEM LEENENHLQT LANQSEQPPP SGGLHSNLRQ IEEKMQQLLE
301 350
ENSTTRP00000013244/1-356 EKLLAEKRXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
bmy_07713T0/1-452 EKLLAEKRMK ENEERSRALE EEREFYSSQS QALQNSLQEL TAEKQQAERE
BACU010767/1-502 EKLLAEKRMK ENEERSRALE EEREFYSSQS QALQNSLQEL TAEKQQAERE
ENSBTAP00000011311/1-506 EKLLAEKRMK ENEERSRALE EEREFYSSQS QALQNSLQEL TVEKQQAERE
ENSP00000317175/1-506 EKLLAEKRMK ENEERSRALE EEREFYSSQS QALQNSLQEL TAEKQQAERE
351 400
ENSTTRP00000013244/1-356 XXDISLLASP QAEVKVRVEL ERRLREAEGA LRSLEQGLNS KVRNKQKEER
bmy_07713T0/1-452 L--------- KAEVKVRVDL ERRLREAEGA LRSLEQGLNS KVRNKEKEER
BACU010767/1-502 L--------- KAEVKVRVDL ERRLREAEGA LRSLEQGLNS KVRNKEKEER
ENSBTAP00000011311/1-506 L--------- KAEVKVRMDL ERRLREAEGA LRSLEQGLNS KVRNKEKEER
ENSP00000317175/1-506 L--------- KAEVKVRMDL ERRLREAEGA LRSLEQGLNS KVRNKEKEER
401 450
ENSTTRP00000013244/1-356 MRADVSHLKR FFEECIRNAE LEAKMPVIMK NSVYIPKAAP CRIKSCRFPR
bmy_07713T0/1-452 MRADVSHLKK ----CIRNAE LEAKMPVIMK NSVYIHKAAT RRIKSCRFHR
BACU010767/1-502 MRADVSHLKK ----CIRNAE LEAKMPVIMK NSVYIHKAAT RRIKSCRFHR
ENSBTAP00000011311/1-506 MRADVSHLKR FFEECIRNAE LEAKMPVIMK NSVYIHKAAT RRIKSCRFHR
ENSP00000317175/1-506 MRADVSHLKR FFEECIRNAE LEAKMPVIMK NSVYIHKAAT RRIKSCRFHR
451 500
ENSTTRP00000013244/1-356 GRSSPFWKDG GCGCPRALMG AARGATVSPV KPSQSFMTSQ LEANNMQELK
bmy_07713T0/1-452 RRSSTSWND- ---------- ---------V KPSQSFMTSQ LEANSMEELK
BACU010767/1-502 RRSSTSWND- ---------- ---------V KPSQSFMTSQ LEANSMEELK
ENSBTAP00000011311/1-506 RRSSTSWND- ---------- ---------V KPSQSFMTSQ LEANNMEELK
ENSP00000317175/1-506 RRSSTSWND- ---------- ---------M KPSQSFMTSQ LDANNMEELK
501 550
ENSTTRP00000013244/1-356 EVAKRLSRDQ RFRESIYHIM ATQPGAP--- -----
bmy_07713T0/1-452 EVAQRLSRDQ RFRESIYHIM ATQPGAPSAL PPGGK
BACU010767/1-502 EVAQRLSRDQ RFRESIYHIM ATQPGAPSAL PPGGK
ENSBTAP00000011311/1-506 EVAKRLSRDQ RFRESIYHIM ATQPGAPSAL PRGGK
ENSP00000317175/1-506 EVAKRLSRDQ RFRESIYHIM ATQPGAPSAL SRGGK