KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:28 2014 Check: 00 .. Name: ENSP00000412886/1-1241 Len: 1244 Check: 9241 Weight: 1.00 Name: ENSBTAP00000011330/1-1196 Len: 1244 Check: 436 Weight: 1.00 Name: ENSTTRP00000001223/1-1200 Len: 1244 Check: 8583 Weight: 1.00 Name: bmy_08638T0/1-1195 Len: 1244 Check: 4551 Weight: 1.00 Name: BACU001292/1-1171 Len: 1244 Check: 3245 Weight: 1.00 // 1 50 ENSP00000412886/1-1241 MGTDSPSPRP LRPGVTLPPG ALTMNTKDTT EVAENSHHLK IFLPKKLLEC ENSBTAP00000011330/1-1196 ---------- ---------- ---MNTKDTT EVAENSHHLK IFLPKKLLEC ENSTTRP00000001223/1-1200 ---------- ---------- ---MNTKDTT EVAENSHHLK IFLPKKLLEC bmy_08638T0/1-1195 ---------- ---------- ---MSTKDTT EVAENSHHLK IFLPKKLLEC BACU001292/1-1171 ---------- ---------- ---MNTKDTT EVAENSHHLK IFLPKKLLEC 51 100 ENSP00000412886/1-1241 LPRCPLLPPE RLRWNTNEEI ASYLITFEKH DEWLSCAPKT RPQNGSIILY ENSBTAP00000011330/1-1196 LPRCPLLPPE RLRWNTNEEI ASYLITFEKH DEWLSCAPKT RPQNGSIILY ENSTTRP00000001223/1-1200 LPRCALLPPE RLRWNTNEEI ASYLITFEKH DEWLSCAPKT RPQNGSIILY bmy_08638T0/1-1195 LPRCALLPPE RLRWNTNEEI ASYLITFEKH DEWLSCAPKT RPQNGSIILY BACU001292/1-1171 LPRCALLPPE RLRWNTNEEI ASYLITFEKH DEWLSCAPKT RPQNGSIILY 101 150 ENSP00000412886/1-1241 NRKKVKYRKD GYLWKKRKDG KTTREDHMKL KVQGMECLYG CYVHSSIVPT ENSBTAP00000011330/1-1196 NRKKVKYRKD GYLWKKRKDG KTTREDHMKL KVQGMECLYG CYVHSSIVPT ENSTTRP00000001223/1-1200 NRKKVKYRKD GYLWKKRKDG KTTREDHMKL KVQGMECLYG CYVHSSIVPT bmy_08638T0/1-1195 NRKKVKYRKD GYLWKKRKDG KTTREDHMKL KVQGMECLYG CYVHSSIVPT BACU001292/1-1171 NRKKVKYRKD GYLWKKRKDG KTTREDHMKL KVQGME---- ---------- 151 200 ENSP00000412886/1-1241 FHRRCYWLLQ NPDIVLVHYL NVPALEDCGK GCSPIFCSIS SDRREWLKWS ENSBTAP00000011330/1-1196 FHRRCYWLLQ NPDIVLVHYL NVPALEDCGK GCSPIFCSIS SDRREWLKWS ENSTTRP00000001223/1-1200 FHRRCYWLLQ NPDIVLVHYL NVPALEDCGK GCSPIFCSIS SDRREWLKWS bmy_08638T0/1-1195 FHRRCYWLLQ NPDIVLVHYL NVPALEDCGK GCSPIFCSIS SDRREWLRWS BACU001292/1-1171 ---------- NPDIVLVHYL NVPALEDCGK GCSPIFCSIS SDRREWLRWS 201 250 ENSP00000412886/1-1241 REELLGQLKP MFHGIKWSCG NGTEEFSVEH LVQQILDTHP TKPAPRTHAC ENSBTAP00000011330/1-1196 REELLGQLKP MFHGIKWSCG NGTEEFSVEQ LVQQILDTHP TKPAPRTHAC ENSTTRP00000001223/1-1200 REELLGQLKP MFHGIK-SC- NGTEEFSVEQ LVQQILDTHP TKLAPRTHAC bmy_08638T0/1-1195 REELLGQLKP MFHGIKWSCG NGTEEFSVEQ LVQQILDTHP TKPAPRTHAC BACU001292/1-1171 REELLGQLKP MFHGIKWSCG NGTEEFSVEQ LVQQILDTHP TKPAPRTHAC 251 300 ENSP00000412886/1-1241 LCSGGLGSGS LTHKCSSTKH RIISPKVEPR ALTLTSIPHA HPPEPPPLIA ENSBTAP00000011330/1-1196 LCSGGLGSGS LTHKCSSTKH RIISPKVEPR ALTLTSVPHP HPPEPPPLIA ENSTTRP00000001223/1-1200 LCSGGLGSGS LTHKCSSTKH RIISPKVEPR ALTLTSVPHP HPPEPPPLIA bmy_08638T0/1-1195 LCSGGLGSGS LTHKCSSTKH RIISPKVEPR ALTLTSVPHP HPPEPPPLIA BACU001292/1-1171 LCSGGLGSGS LTHKCSSTKH RIISPKVEPR ALTLTSVPHP HPSEPPPLIA 301 350 ENSP00000412886/1-1241 PLPPELPKAH TSP-SSSSSS SSSGFAEPLE IRPSPPTSRG GSSRGGTAIL ENSBTAP00000011330/1-1196 PLPPELPKAH TSPSSSSSSS SSSGFAEPLE IRPSPPTSRG GSSRGGTAIL ENSTTRP00000001223/1-1200 PLPSELPKAH TSPSSSSSSS SSSGFAEPLE IRPSPPTSRG GSSTGGTAIL bmy_08638T0/1-1195 PLPPELPKAH TSPSSSSSSS SSSGFAEPLE IRPSPPTSRG GSSTGGTAIL BACU001292/1-1171 PLPPELPKAH TSPSSSSSSS SSSGFAEPLE IRASPPTSRG GSSTGGTAIL 351 400 ENSP00000412886/1-1241 LLTGLEQRAG GLTPTRHLAP QADPRPSMSL AVVVGTEPSA PPAPPSPAFD ENSBTAP00000011330/1-1196 LLTGLEQRAG GLTPTRHLAP QADPRPPMSL AVVVGSEPSA PPAPPSPAFD ENSTTRP00000001223/1-1200 LLTGLEQRTG GLTPTRHLAS QADPRPSMSL AVVVGSEPSA PPAPPSPAFD bmy_08638T0/1-1195 LLTGLEQRTG GLTPTRHLAP QADPRPSMSL AVVVGSEPSA PPAPPSPAFD BACU001292/1-1171 LLTGLEQRTG GLTPTRHLAS QADPRPSMSL AVVVGSEPSA PPAPPSPAFD 401 450 ENSP00000412886/1-1241 PDRFLNSPQR GQTYGGGQGV SPDFPEAEAA HTPCSALEPA AALEPQAAAR ENSBTAP00000011330/1-1196 PDRFLNSPQR GQTYGGGQGV SPDFPEAEAA HTPCPALEPA AALEPQVATR ENSTTRP00000001223/1-1200 PDRFLNSPQR GQTYGGGQGV SPDFPETEAA HTPCPALEPA AALEPQAAAR bmy_08638T0/1-1195 PDRFLNSPQR GQTYGGGQGV SPDFPETEAA HTPCPALEPA AALEPQAAAR BACU001292/1-1171 PDRFLNSPQR GQTYGGGQGV SPDFPETEAA HTPCPALEPA AALEPQAAAR 451 500 ENSP00000412886/1-1241 GPPPQSVAGG RRGNCFFIQD DDSGEELKGH GAAPPIPSPP PSPPPSPAPL ENSBTAP00000011330/1-1196 GLPPQSGAGG RRGNCFFIQD DDSGEELKAQ GAAPPVPSPP PSPPPSPAPL ENSTTRP00000001223/1-1200 GPAPQPRAGG RRGNCFFIQD DDSGEERKAQ GAAPPVPSPP PSPTPSPAPL bmy_08638T0/1-1195 GPPPQPRAGG RRGNCFFIQD DDSGEELKAQ GAAPPVPSPP PSPAPSPAPL BACU001292/1-1171 GPPPQPRAGG RRGNCFFIQD DDSGEELKAQ GAAPPVPSPP PSPAPSPSPL 501 550 ENSP00000412886/1-1241 EPSSRVGRGE ALFGGPVGAS ELEPFSLSSF PDLMGELISD EAPSIPAPTP ENSBTAP00000011330/1-1196 EPSGRVGRGE ALFGGAGGGS ELEPFSLSSF PDLMGELISD EAPSGPAPTP ENSTTRP00000001223/1-1200 EPSGRVGRGE ALFGGAGGAS ELEPFSLSSF PELMGELISD EAPSGPAPAP bmy_08638T0/1-1195 EPSGRVGRGE ALFGGAGGAS ELEPFSLSSF PDLMGXLISD EAPSGPAPAP BACU001292/1-1171 EPSGRVGRGE ALFGGTGGAS ELEPFSLSSF PDLMGELISD EAPSGPAPVP 551 600 ENSP00000412886/1-1241 QLSPALSTIT DFSPEWSYPE GGVKVLITGP WTEAAEHYSC VFDHIAVPAS ENSBTAP00000011330/1-1196 QLSPALSTIT DFSPEWSYPE GGVKVLITGP WTEAAEHYSC VFDHIAVPAS ENSTTRP00000001223/1-1200 QLSPALSTIT DFSPEWSYPE GGVKVLITGP WTEAAEHYSC VFDHIAVPAS bmy_08638T0/1-1195 QLSPALSTIT DFSPEWSYPE GGVKVLITGP WTEAAEHYSC VFDHIAVPAS BACU001292/1-1171 QLSPALSTIT DFSPEWSYPE GGVKVLITGP WTEAAEHYSC VFDHIAVPAS 601 650 ENSP00000412886/1-1241 LVQPGVLRCY CPAHEVGLVS LQVAGREGPL SASVLFEYRA RRFLSLPSTQ ENSBTAP00000011330/1-1196 LVQPGVLRCY CPAHEVGLVS LQVAGREGPL SASVLFEYRA RRFLSLPSTQ ENSTTRP00000001223/1-1200 LVQPGVLRCY CPAHEVGLVS LQVAGREGPL SASVLFEYRA RRFLSLPSTQ bmy_08638T0/1-1195 LVQPGVLRCY CPAHEVGLVS LQVAGREGPL SASVLFEYRA RRFLSLPSTQ BACU001292/1-1171 LVQPGVLRCY CPAHEVGLVS LQVAGREGPL SASVLFEYRA RRFLSLPSTQ 651 700 ENSP00000412886/1-1241 LDWLSLDDNQ FRMSILERLE QMEKRMAEIA AAGQVPCQGP DAPPVQDEGQ ENSBTAP00000011330/1-1196 LDWLSLDDNQ FRMSILERLE QMEKRMAEIA AAGQAPCQAP DTPPIQDEGQ ENSTTRP00000001223/1-1200 LDWLSLDDNQ FRMSILERLE QMEKRMAEIA AAGQAPYRGP DAPPIQDEGQ bmy_08638T0/1-1195 LDWLSLDDNQ FRMSILERLE QMEKRMAEIA AAGQAPYQGP DAPPIQDEGQ BACU001292/1-1171 LDWLSLDDNQ FRMSILERLE QMEKRMAEIA AAGQAPYQGP DAPPIQDEGQ 701 750 ENSP00000412886/1-1241 GPGFEARVVV LVESMIPRST WKGPERLAHG SPFRGMSLLH LAAAQGYARL ENSBTAP00000011330/1-1196 GPGFEARVVV LVENMIPRST WRGPERLAHG SPFRGMSLLH LAAAQGYARL ENSTTRP00000001223/1-1200 GPGFEARVVV LVESMIPRSP WRGPERLAHG SPFRGMSLLH LAAAQGYARL bmy_08638T0/1-1195 GPGFEARVVV LVESMIPRST WRGPERLAHG SPFRGMSLLH LAAAQGYARL BACU001292/1-1171 GPGFEARVVV LVESMIPRST WRGPERLAHG SPFRGMSLLH LAAAQGYARL 751 800 ENSP00000412886/1-1241 IETLSQWRSV ETGSLDLEQE VDPLNVDHFS CTPLMWACAL GHLEAAVLLF ENSBTAP00000011330/1-1196 IETLSQWRSV ETGSLDLEQE VDPLNVDHFS CTPLMWACAL GHLEAAVLLF ENSTTRP00000001223/1-1200 IETLSQWRSV ETGSLDLEQE VDPLNVDHFS CTPLMWACAL GHLEAAVLLF bmy_08638T0/1-1195 IETLSQWRSV ETGSLDLEQE VDPLNVDHFS CTPLMWACAL GHLEAAVLLF BACU001292/1-1171 IETLSQWRSV ETGSLDLEQE VDPLNVDHFS CTPLMWACAL GHLEAAVLLF 801 850 ENSP00000412886/1-1241 RWNRQALSIP DSLGRLPLSV AHSRGHVRLA RCLEELQRQE PSVEPPFALS ENSBTAP00000011330/1-1196 RWNRQALSIP DSLGRLPLSV AHSRGHVRLA RCLEELQRQE ASSEPPPALS ENSTTRP00000001223/1-1200 RWNRQALSIP DSLGRLPLSV AHSRGHVRLA RCLEELQRQE ASAEPPFALS bmy_08638T0/1-1195 RWNRQALSIP DSLGRLPLSV AHSRGHVRLA RCLEELQRQE ASAEPPLALS BACU001292/1-1171 RWNRQALSIP DSLGRLPLSV AHSRGHVRLA RCLEELQRQE ASAEPPLALS 851 900 ENSP00000412886/1-1241 PPSSSPDTGL SSVSSPSELS DGTFSVTSAY SSAPDGSPPP APLPASEMTM ENSBTAP00000011330/1-1196 PPSSSPDTGL SSVSSPSELS DGTFSVTSAY SSAPDGSPPP VPLPASEMTM ENSTTRP00000001223/1-1200 PPSSSPDTGL SSVSSPSELS DGTFSVTSAY SSAPDGSPPP APLPTSEITM bmy_08638T0/1-1195 PPSSSPDTGL SSVSSPSELS DGTFSVTSAY SSAPDGSPPP APLPTSEITM BACU001292/1-1171 PPSSSPDTGL SSVSSPSELS DGTFSVTSAY SSAPDGSPPP APLPTSEITM 901 950 ENSP00000412886/1-1241 EDMAPGQLSS GVPEAPLLLM DYEATNSKGP LSSLPALPPA SDDGAAPEDA ENSBTAP00000011330/1-1196 E-MVPGQLSS GAPEAPLFLM DYEATNSRGP PPSPPPLPPA LDGGAAPEEA ENSTTRP00000001223/1-1200 E-MVPGQLSS GAPEAPLLLM DYEATNPKGP PPSPPPLPPA PDGRAAPAET bmy_08638T0/1-1195 E-MVPGRLSS GAPEAPLLLM DYEATNPKRP PPSPPPLPPA PDGGAAPEET BACU001292/1-1171 E-MVPGRLSS GAPEAPLLLM DYEATNPKGP PPSPPPLPPA PDGGAAPEET 951 1000 ENSP00000412886/1-1241 DSPQAVDVIP VDMISLAKQI IEATPERIKR EDFVGLPEAG ASMRERTGAV ENSBTAP00000011330/1-1196 DSPPAVDVIP VDMISLAKQI IEATPERIKR EDFVGLSEAG ATIRERTGAV ENSTTRP00000001223/1-1200 DSPPAVDVIP VDMISLAKQI IEATPERIKR EDFVGLPEAG APMRERTGAV bmy_08638T0/1-1195 DSPPAVDVIP VDMISLAKQI IEATPERIKR EDFVGLPEAG APMRERTGAV BACU001292/1-1171 DSPPAVDVIP VDMISLAKQI IEATPERIKR EDFVGLPEAG APMRERTGAV 1001 1050 ENSP00000412886/1-1241 GLSETMSWLA SYLENVDHFP SSTPPSELPF ERGRLAVPSA PSWAEFLSAS ENSBTAP00000011330/1-1196 GLSETMSWLA SYLENVDHFP SSAPPSELPF ERGRLAVPPA PSWAEFLSAS ENSTTRP00000001223/1-1200 GLSETMSWLA SYLENVDHFP SSAPPSELPF ERGRLAIPPA PSWAEFLSAS bmy_08638T0/1-1195 GLSETMSWLA SYLENVDHFP SSAPPSELPF ERGRLAIPPA PSWAEFLSAS BACU001292/1-1171 GLSETMSWLA SYLENVDHFP SSAPPSELSF ERGRLAIPPA PSWAEFLSAS 1051 1100 ENSP00000412886/1-1241 TSGKMESDFA LLTLSDHEQR ELYEAARVIQ TAFRKYKGRR LKEQQEVAAA ENSBTAP00000011330/1-1196 ASGKMESDFA LLTLSDHEQR ELYEAARVIQ TAFRKYKGRR LKEQQEVAAA ENSTTRP00000001223/1-1200 ASGKMESDFA LLTLSDHEQR ELYEAARVIQ TAFRKYKGRR LKEQQEVAAA bmy_08638T0/1-1195 ASGKMESDFA LLTLSDHEQR ELYEAARVIQ TAFRKYKGRR LKEQQEVAAA BACU001292/1-1171 ASGKMESDFA LLTLSDHEQR ELYEAARVIQ TAFRKYKGRR LKEQQEVAAA 1101 1150 ENSP00000412886/1-1241 VIQRCYRKYK QLTWIALKFA LYKKMTQAAI LIQSKFRSYY EQKRFQQSRR ENSBTAP00000011330/1-1196 VIQRCYRKYK QLTWIALKFA LYKKMTQAAI LIQSKFRSYY EQKRFQQSRR ENSTTRP00000001223/1-1200 VIQRCYRKYK QLTWIALKFA LYKKMTQAAI LIQSKFRSYY EQKRFQQSRR bmy_08638T0/1-1195 VIQRCYRKYK Q-------FA LYKKMTQAAI LIQSKFRSYY EQKRFQQSRR BACU001292/1-1171 VIQRCYRKYK Q-------FA LYKKMTQAAI LIQSKFRSYY EQKRFQQSRR 1151 1200 ENSP00000412886/1-1241 AAVLIQQHYR SYRRRPGPPH RTSATLPARN K--LLSHQEA GPGSPEDHEI ENSBTAP00000011330/1-1196 AAVLIQQRYR SYRRRP---- --PGTLPARN KGSFLTKKQD QAARKIMRFL ENSTTRP00000001223/1-1200 AAVLIQQHYR SYRRRPGPPH RPTGTLPARN KGSFLTKKQD QAARKIMRFL bmy_08638T0/1-1195 AAVLIQQHYR SYRRRPGPPH RPTGTLPARN KGSFLTKKQD QAARKIMRFL BACU001292/1-1171 AAVLIQQHYR SYRRRPGPPH RPTGTLPARN KGSFLTKKQD QAARKIMRFL 1201 1250 ENSP00000412886/1-1241 PAALPTQDEG TEAEPGAGRA SPAGTGHMTW PPPFSPPWGR LVQS ENSBTAP00000011330/1-1196 RRCRHRMREL KQNQELEGLP QPG------- ---------- -LAT ENSTTRP00000001223/1-1200 RRCRHRMREL KQNQELEGLP QPG------- ---------- -LAT bmy_08638T0/1-1195 RRCRHRMREL KQNQELEGLP QPG------- ---------- -LAT BACU001292/1-1171 RRCRHRMREL KQNQELEGLP QPG------- ---------- -LAT