KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:31 2014 Check: 00 .. Name: ENSBTAP00000011351/1-729 Len: 811 Check: 6989 Weight: 1.00 Name: ENSP00000323816/1-719 Len: 811 Check: 5464 Weight: 1.00 Name: bmy_05098T0/1-740 Len: 811 Check: 5688 Weight: 1.00 Name: BACU014743/1-668 Len: 811 Check: 8689 Weight: 1.00 // 1 50 ENSBTAP00000011351/1-729 MRAPAAVPTQ LPVPADASRR RALASAPRRP GPETMIPPGE CLYAGRKRRK ENSP00000323816/1-719 ---------- ---------- ---------- MPRTMIPPGE CTYAGRKRRR bmy_05098T0/1-740 ---------- ---------- MGNAVRGLVA QPAPTSPPP- ---AARGRRG BACU014743/1-668 ---------- ---------- ---------- MGAEKSNP-- ---------- 51 100 ENSBTAP00000011351/1-729 PVQKQRPAVG AEK----SNP SKRHRDRLNA ELDHLASLLP ------LPPD ENSP00000323816/1-719 PLQKQRPAVG AEK----SNP SKRHRDRLNA ELDHLASLLP ------FPPD bmy_05098T0/1-740 GMHRVCSLPG GGRKALVATT AQPHESRGGP STAHPASAQT PGRGGLWSPE BACU014743/1-668 ---------- ---------- SKRHRDRLNA ELDHLASLLP ------LPPD 101 150 ENSBTAP00000011351/1-729 ---IISKLDK LSVLRLSVSY LRV-----KS FFQALQERCP RQPVAAAPSP ENSP00000323816/1-719 ---IISKLDK LSVLRLSVSY LRV-----KS FFQVVQEQSS RQPAAGAPSP bmy_05098T0/1-740 GGCWTGSLQG LLLGRCCQLL IRREACGGQS WLSLSEGHSH GRNGRHQP-P BACU014743/1-668 ---IISKLDK LSVLRLSVSY LRV-----KS FFQALQ---- -QPAAGAPSP 151 200 ENSBTAP00000011351/1-729 GDR--GPRGG SAGS------ -----TVLEG RLLLESLHGF ALVVSAEGMI ENSP00000323816/1-719 GDS--CPLAG S--------- -----AVLEG RLLLESLNGF ALVVSAEGTI bmy_05098T0/1-740 GSRPSDPAGH GHGAGREAGA NSDQIPAAQE PQVSQSLHGF ALVVSAEGMI BACU014743/1-668 GDR--DPRGG S--------- -----AVLEG RLLLESLHGF ALVVSAEGMI 201 250 ENSBTAP00000011351/1-729 FYASATIVDY LGFHQITDLL SGKIYLH-HV EDEGERGNRC GGVHVSQEPP ENSP00000323816/1-719 FYASATIVDY LGFHQ-TDVM HQNIYDYIHV DD---RQDFC RQLHWAMDPP bmy_05098T0/1-740 FYASATIVDY LGFHQ-TDVM HQNIYDYIHV DD---RQDFC RQLHWAMDPP BACU014743/1-668 FYASATIVDY LGFHQ-TDVM HQNIYDYIHV DD---RQDFC RQLHWAMDPP 251 300 ENSBTAP00000011351/1-729 SLHQTRAPRT HL-DATFLGA GLIASPGGVL SPGGHAGSAG LARVFTVRLG ENSP00000323816/1-719 QVVFGQPPPL ETGDDAILGR LLRAQEWGTG TPTEY--SAF LTRCFICRVR bmy_05098T0/1-740 QAGCGQNLLS ETGEDAILGR LLQAQEGAAG WPTEY--SAF LTRCFICRVR BACU014743/1-668 QAGCGQNLLS ETGEDAVLGR LLRAQEGAAG WPTEY--SAF LTRCFICRVR 301 350 ENSBTAP00000011351/1-729 CCTEGDCGAN ---------- --------TR HMFDKLQVAL GSM----TVS ENSP00000323816/1-719 CLLDSTSGFL ARGSQAWQLR LCCPEPLMTM QFQGKLKFLF GQKKKAPSGA bmy_05098T0/1-740 CLLDSTSGFL ---------- --------TM QFQGKLKFLF GQKRRAPSGA BACU014743/1-668 CLLDSTSGFL ---------- --------TM QFQGKLKFLF GQKRRAPSGT 351 400 ENSBTAP00000011351/1-729 SMRCRCVCVC VRALPWATFT QGVTVSYALG WQQNRALLSS VL-CRAKAAS ENSP00000323816/1-719 MLPPRLSLFC IAAPVLLPSA AEMKMRSALL RAKPRADTAA TADAKVKATT bmy_05098T0/1-740 ALPPRLSLFC VVAP--LPTA --VKMQSVCL RVKHRVDVSA TPDTKAKAAA BACU014743/1-668 ALPPRLSLFC VVAP--LPTA --VKMQSVCL RAKHRVDVSA TPDTKAKAAA 401 450 ENSBTAP00000011351/1-729 SLCESELLGN TNYSAGRSNG ENGLSLFRTP EDACRWGRVT ARGPCLCLRG ENSP00000323816/1-719 SLCESELHGK PNYSAGRSSR ESGVLVLREQ TDAGRWAQVP ARAPCLCLRG bmy_05098T0/1-740 SLCEPELHGK PNYLAGRSNG ENGLSVFRMP ADACHWGRLA TRAPCLCLRG BACU014743/1-668 SLCEPELHGK PNYLAGRSNG ENGLSVFRMP ADACHWGRLA TRAPCLCLRG 451 500 ENSBTAP00000011351/1-729 GPDLVLDPDG TSGAEEGEEL GGLPR----- ----DAPPYS CRLESLGPVK ENSP00000323816/1-719 GPDLVLDPKG GSGDREEEQH RMLSRASGV- ---------T GRRETPGPTK bmy_05098T0/1-740 GHDLLLQPEG AAGDGRGEEL GGVPRGPSCP RERRDVLPYS CHLETQGPSK BACU014743/1-668 GHDLLLQPEG AAGDGRGEEL GGVPRGPSCP RERRDVLPYS CHLETQGPSK 501 550 ENSBTAP00000011351/1-729 HLDWAAGRHG QDDGSAKLKL EPGKADPFPT AP-AHGACLP YLGAQGTVHS ENSP00000323816/1-719 PLPWTAGKHS ED-G-ARPRL QPSKNDPPSL RPMPRGSCLP CPCVQGT--- bmy_05098T0/1-740 HLNWTPGRHG QD-GGTKLKL EPGKGDPFPA PP-ARGACLP YPGTQGTVHA BACU014743/1-668 HLNWTPGRHG QD-GGTKLKL EPGKGDPFPA AP-ARGACLP YPGTQGTVHA 551 600 ENSBTAP00000011351/1-729 LRSSPSSHPP RPPPGACASR TSRALRDGHQ GPAPPPTPGP FPQGGLDSRV ENSP00000323816/1-719 FRNSPISHPP SPSPSAYSSR TSRPMRDVGE DQVHPPL-CH FPQRSLQHQL bmy_05098T0/1-740 VRSSPGSHQP KPPPGPCAGR TSRALRDGHQ GQAPPPTSCP FPQGSLEDGL BACU014743/1-668 VRSSPGSHQP KPPPGACAGR TSRALRDGPQ GQAAPPTSCP FPQGSLEDGL 601 650 ENSBTAP00000011351/1-729 PRPAVQRLPV GGYPAED-KL RGLLMPPGAP SHPALSLDVP IKMESDSGSE ENSP00000323816/1-719 PQPGAQRFAT RGYPMEDMKL QGVPMPPGDL CGPTLLLDVS IKMEKDSGCE bmy_05098T0/1-740 PRPGGQRLPA GCYPTED-KL RGVPMPPGAP CNPILSLDVP IKMESESGSE BACU014743/1-668 PRPGGQRLPA GCYPTED-KL RGVPMPPGAP CNPVLSLDVP IKMESESGSE 651 700 ENSBTAP00000011351/1-729 DAADGYRMSP AQVWLGAGNP AKRQLVTFPT RMHLKTEPGA RLPLYTPPPG ENSP00000323816/1-719 GAADG--CVP SQVWLGASD- -RSHPATFPT RMHLKTEPDS RQQVYISHLG bmy_05098T0/1-740 DAADGYSVSP SQAWLGASDV AKRQLVTFPT RMHLKMEPDS RHPLYSPPLG BACU014743/1-668 DAADGYSVSP SQAWLGASDV AKRQLVTFPT RMHLKTEPDS RHPLYSPPLG 701 750 ENSBTAP00000011351/1-729 PGLLGAPPR- -----PGRGL APLHPTSCAC L--------- EPPPRLCMRG ENSP00000323816/1-719 HGVRGAQPHG RATAGRSREL TPFHPAHCAC LEPTDGLPQS EPPHQLCARG bmy_05098T0/1-740 PGLLGAHPR- -----PGREL APLHPAHCAC L--------- EPPPRLCAGG BACU014743/1-668 PGLLGAQPR- -----PGREL APLHPAHCAC L--------- EPPPRLCAGG 751 800 ENSBTAP00000011351/1-729 HQPFNLGCNC RAPGPAPAVK LEPLDSPLWA AHGQGGPPGL FSKSAPAAGM ENSP00000323816/1-719 RGEQS--CTC RAAEAAPVVK REPLDSPQWA THSQGMVPGM LPKSALATLV bmy_05098T0/1-740 HQSPSLGCDC QAPGPAPVVK LEPLDSPPWA AHSQGGAPGM LPRSALATRM BACU014743/1-668 HQPPSLGCDC HAPGPAPVVK LEPLDSPPWA AHSQGGAPGI LPRSTLATRM 801 850 ENSBTAP00000011351/1-729 PPRDTQCAFL P ENSP00000323816/1-719 PPQASGCTFL P bmy_05098T0/1-740 PPRDPECTFL P BACU014743/1-668 PPRDPECTFL P