KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:34 2014 Check: 00 .. Name: ENSTTRP00000011711/1-559 Len: 606 Check: 3440 Weight: 1.00 Name: ENSBTAP00000011376/1-543 Len: 606 Check: 3087 Weight: 1.00 Name: bmy_02612T0/1-355 Len: 606 Check: 5338 Weight: 1.00 Name: BACU016672/1-603 Len: 606 Check: 1732 Weight: 1.00 // 1 50 ENSTTRP00000011711/1-559 ---------- ---------- ---------- ---------- ------AGPR ENSBTAP00000011376/1-543 ---------- ---------- ---------- ---------- ---------- bmy_02612T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU016672/1-603 MCLEITDLPP SKQEGAEGLI ATAMVPNFPL AVSREYVSAG AQLLSHAGPR 51 100 ENSTTRP00000011711/1-559 AAGSKPNPST HIVMNSHRHN GFGGRPLGGG LGALGRDPPD PEAGHPPQPP ENSBTAP00000011376/1-543 ---------- ---MNSYRHS GCEGRPLGGG LGALGRDPLD PEAGHPPQPP bmy_02612T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU016672/1-603 AAGSKPNPST HIVMNSHRHI GFGGRPLGGG LGALGRDPLD PEAGHPPQPP 101 150 ENSTTRP00000011711/1-559 NGPGIQVVVA KSEPAQPSPG SPRGQPQDQE EEEDEEEDEA GRQRGSGKPP ENSBTAP00000011376/1-543 NGPGIQVVVA KSEPAQPSPG SPRGQPQDQE EEEDEEEDEA VRQRGSGKPP bmy_02612T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU016672/1-603 NGPGIQVVVA KSEPAQPSPG SPRGQPQDQE EEEDEEEDEA GRQRGSGKPP 151 200 ENSTTRP00000011711/1-559 SVGHRLGHRR ALFEKRKRLS DYALIFGMFG IVVMVTETEL SWGVYSKESL ENSBTAP00000011376/1-543 SVGHRLGHRR ALFEKRKRLS DYALIFGMFG IVVMVTETEL SWGVYTKESL bmy_02612T0/1-355 ---------- ---------- ---------- ---------- ---------- BACU016672/1-603 SVGHRLGHRR ALFEKRKRLS DYALIFGMFG IVVMVTETEL SWGVYSKESL 201 250 ENSTTRP00000011711/1-559 YSFALKCLIS LSTVILLGLV VLYHAREIQX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011376/1-543 YSFALKCLIS LSTVILLGLV ILYHAREIQL FMVDNGADDW RIAMTCERVF bmy_02612T0/1-355 ---------- ---------- ---------- -MVDNGADDW RIAMTCERVF BACU016672/1-603 YSFALKCLIS LSTVILLGLV VLYHAREIQL FMVDNGADDW RIAMTCERVF 251 300 ENSTTRP00000011711/1-559 XXXXXXXXXX XXPVPGHYRF TWTARLAFTY APAAAEADVD VLLSVPMFLR ENSBTAP00000011376/1-543 LISLELAVCA IHPVPGHYRF TWTARLAFTY TPSAAEADVD VLLSVPMFLR bmy_02612T0/1-355 LISLELAVCA IHPVPGHYRF TWTARLAFTY APAAAEADVD VLLSVPMFLR BACU016672/1-603 LISLELAVCA IHPVPGHYRF TWTARLAFTY APAAAEADVD VLLSVPMFLR 301 350 ENSTTRP00000011711/1-559 LYLLGRVMLL HSRIFTDASS RSIGALNKIT FNTRFVMKTL MTICPGTVLL ENSBTAP00000011376/1-543 LYLLGRVMLL HSKIFTDASS RSIGALNKIT FNTRFVMKTL MTICPGTVLL bmy_02612T0/1-355 LYLLGRVMLL HSRIFTDASS RSIGALNKIT FNTRFVMKTL MTICPGTVLL BACU016672/1-603 LYLLGRVMLL HSRIFTDASS RSIGALNKIT FNTRFVMKTL MTICPGTVLL 351 400 ENSTTRP00000011711/1-559 VFSISSWIIA AWTVRVCERY HDKQEVTSNF LGAMWLISIT FLSIGYGDMV ENSBTAP00000011376/1-543 VFSISSWIIA AWTVRVCERY HDKQEVTSNF LGAMWLISIT FLSIGYGDMV bmy_02612T0/1-355 VFSISSWIIA AWTVRVCERY HDKQEVTSNF LGAMWLISIT FLSIGYGD-- BACU016672/1-603 VFSISSWIIA AWTVRVCERY HDKQEVTSNF LGAMWLISIT FLSIGYGDMV 401 450 ENSTTRP00000011711/1-559 PHTYCGKGVC LLTGIMGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL ENSBTAP00000011376/1-543 PHTYCGKGVC LLTGIMGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL bmy_02612T0/1-355 ---------- -----MGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL BACU016672/1-603 PHTYCGKGVC LLTGIMGAGC TALVVAVVAR KLELTKAEKH VHNFMMDTQL 451 500 ENSTTRP00000011711/1-559 TKRVKNAAAN VLRETWLIYK HTRLVKKPDH ARVRKHQRKF LQAIHHG-RL ENSBTAP00000011376/1-543 TKRVKNAAAN VLRETWLIYK HTRLVKKPDQ ARVRKHQRKF LQAIHQAQKL bmy_02612T0/1-355 TKRVKNAAAN VLRETWLIYK HTRLVKKPDH ARVRKHQRKF LQAIHQ---L BACU016672/1-603 TKRVKNAAAN VLRETWLIYK HTRLVKKPDH ARVRKHQRKF LQAIHQ---L 501 550 ENSTTRP00000011711/1-559 RSVKIEQGKL NDQTNTLADL AKTQNVMYNL MSELHAQHEE LEARLAALES ENSBTAP00000011376/1-543 RSVKIEQGKL NDQTNTLADL AKTQNVMYDL MSELHAQHEE LEARLAALES bmy_02612T0/1-355 RSVKIEQGKL NDQTNTLADL AKTQNVMYNL MSELHAQHEE LEARLAALEN BACU016672/1-603 RSVKIEQGKL NDQTNTLADL AKTQNVMYNL MSELHAQHEE LEARLAALES 551 600 ENSTTRP00000011711/1-559 RLDALGVSLQ ALPGLIAQAI RPPPPPLPPR PGSGPLDPVA RSPLHRRPPT ENSBTAP00000011376/1-543 RLDALGTSLQ ALPGLIAQAI RPPPPTLPPW PGSGPLDQVA RSPPHWWPPV bmy_02612T0/1-355 RLDALGASLQ ALPGLIAQAI RPPPPPLPPR PGSGPLDQVA RSPPHRRPPT BACU016672/1-603 RLDALGASLQ ALPGLIAQAI RPPPPPLPPR PGSGPLDQVA RSPPHRRPPT 601 650 ENSTTRP00000011711/1-559 APSDCG ENSBTAP00000011376/1-543 APSDCG bmy_02612T0/1-355 APSDCG BACU016672/1-603 APSDCG