KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:35 2014 Check: 00 .. Name: ENSBTAP00000011388/1-295 Len: 317 Check: 5014 Weight: 1.00 Name: ENSTTRP00000005233/1-300 Len: 317 Check: 1258 Weight: 1.00 Name: bmy_00787T0/1-311 Len: 317 Check: 9203 Weight: 1.00 Name: BACU011905/1-311 Len: 317 Check: 9722 Weight: 1.00 // 1 50 ENSBTAP00000011388/1-295 MELIQDTSRP PAKYVKGIPL IKYFAEALGP LESFEAWPDD LLISTYPKSG ENSTTRP00000005233/1-300 MELVQDTSRP PLEHVKGIPL IRYFAEGLGP LQSFQAWPSD LLISTYPKSG bmy_00787T0/1-311 MELVQDTSRP PLEYMKGIPL IKYFAEGLGP LQSFQAWPND LLISTYPKSG BACU011905/1-311 MELVQDTSRP PLEYMKGIPL IKYFAEGLGP LQSFQAWPTD LLISTYPKSG 51 100 ENSBTAP00000011388/1-295 TTWVSEILDL IYQEGDLEKC QRAPVFLRVP FLEFSAPGVP TGVELLKDTP ENSTTRP00000005233/1-300 TTWVSEILDL IYQGGDLEKC QRAPIFVRVP FLELRVPGLP TGAELLEDTP bmy_00787T0/1-311 TTWVSEILDL IYQGGDLEKC QRAPIFVRVP FLEFRVPGVP AGAELLEDTP BACU011905/1-311 TTWVSEILDL IYQGGDLEKC QRAPIFVRVP FLEFRVPGVP TGAELLEDTP 101 150 ENSBTAP00000011388/1-295 APRLLKTHLP LALLPKTLLD QKVKVIYIAR NAKDVAVSYY HFYRMAKVHP ENSTTRP00000005233/1-300 APRLIKTHLP LALLPPTLLD QKVKVVYVAR NAKDVAVSYY HFYRMAKVHP bmy_00787T0/1-311 APRLIKTHLP LALLPPTLLD QKVKVVYVAR NAKDVAVSYY HFYRMAKVHP BACU011905/1-311 APRLIKTHLP LALLPPTLLD QKVKVVYVAR NAKDVAVSYY HFYRMAKVHP 151 200 ENSBTAP00000011388/1-295 DPGTWDSFLE KFMAGEVCYG SWYQHVQEWW ELSHTHPVLY LFYEDIK--- ENSTTRP00000005233/1-300 DPGTWDSFLE KFMAGEVSYG SWYQHVQEWW ELSHTHPVLY LFYEDIKQEP bmy_00787T0/1-311 DPGTWDSFLE KFMAGEVSYG SWYQHVQEWW ELSHTHPVLY LFYEDIK--- BACU011905/1-311 DPGTWDSFLE KFMAGEVSYG SWYQHVQEWW ELSHTHPVLY LFYEDIK--- 201 250 ENSBTAP00000011388/1-295 ---EDPKREI QKILEFIGRS LPEETVDHIV QRTSFKEMKK NPMTNYSTIP ENSTTRP00000005233/1-300 SAAQNPKREI QKILEFVGHS LPEETVDHIV QHTSFKEMKK NPMTNYSTIP bmy_00787T0/1-311 ---QNPKREI QKILEFVGXS LPEETVDHIV QHTSFKEMKK NPMTNYSTIP BACU011905/1-311 ---QNPKREI QKILEFVGRS LPEETVDHIV QHTSFKEMRK NPMTNYSTIP 251 300 ENSBTAP00000011388/1-295 TAVMDHSISA FMRKGITGDW KSTFTVAQNE LFEAHYAKKM AGCKLRFRWE ENSTTRP00000005233/1-300 TKVMDHSISA FMRKGITGDW KSTFTVAQNE RFEADYAAKM AGCHLHFRWE bmy_00787T0/1-311 IKVMDHSISA FMRKGLTGDW KSTFTVAQNE RFEADYAAKM AGCNLHFRWE BACU011905/1-311 IKVMDHSISA FMRKGITGDW KSTFTVAQNE RFEADYAAKM AGCNLHFRWE 301 350 ENSBTAP00000011388/1-295 L--------- ------- ENSTTRP00000005233/1-300 ---------- ------- bmy_00787T0/1-311 LSGAHQGERE TSLNNKI BACU011905/1-311 LSGAHQDERE TSLNNKI