KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:35 2014 Check: 00 .. Name: ENSTTRP00000007622/1-736 Len: 752 Check: 2447 Weight: 1.00 Name: ENSP00000332116/1-736 Len: 752 Check: 5394 Weight: 1.00 Name: bmy_21719T0/1-577 Len: 752 Check: 1897 Weight: 1.00 Name: BACU000186/1-721 Len: 752 Check: 2389 Weight: 1.00 Name: ENSBTAP00000011390/1-721 Len: 752 Check: 2373 Weight: 1.00 // 1 50 ENSTTRP00000007622/1-736 MKKSRSVMTV TADDXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332116/1-736 MKKSRSVMTV MADDNVKDYF ECSLSKSYSS SSNTLGIDLW RGRRCCSGNL bmy_21719T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU000186/1-721 ---------- --------MT AKDSSKELTA SESEVCIKTF KEQMHLELEL ENSBTAP00000011390/1-721 ---------- --------MT AKDSSKELTA SESEVCIKTF KEQMHLELEL 51 100 ENSTTRP00000007622/1-736 XXXXXXXXXX XXX---XXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXFDV ENSP00000332116/1-736 QLPPLSQRQS ERA---RTPE GDGISRPTTL PLTTLPSIAI TTVSQECFDV bmy_21719T0/1-577 ---------- ---------- ---------- ---------- --------MK BACU000186/1-721 PRLPGNRPTS PKISPRSSPR NSPCFFRKLL VNKSIRQRRR FTVAHTCFDV ENSBTAP00000011390/1-721 PRLPANRPTS PKISPRSSPR NSPCFFRKLL VNKSIRQRRR FTVAHTCFDV 101 150 ENSTTRP00000007622/1-736 ENGPSPGRSP LDPQASSSSG LVLHATFPGH SQRRESFLYR SDSDYDLSPK ENSP00000332116/1-736 ENGPSPGRSP LDPQASSSAG LVLHATFPGH SQRRESFLYR SDSDYDLSPK bmy_21719T0/1-577 EHGAT----- -----FSSAG I------SGG S--------- ---------- BACU000186/1-721 ENGPSPGRSP LDPQASSSSG LVLHATFPGH SQRRESFLYR SDSDYDLSPK ENSBTAP00000011390/1-721 ENGPSPGRSP LDPQASSSSG LVLHATFPGH SQRRESFLYR SDSDYDLSPK 151 200 ENSTTRP00000007622/1-736 AMSRNSSLPS EQHGDDLIVT PFAQVLASLR SVRNNFTVLT NLHGTPNKRS ENSP00000332116/1-736 AMSRNSSLPS EQHGDDLIVT PFAQVLASLR SVRNNFTILT NLHGTSNKRS bmy_21719T0/1-577 ---------- ---GDS---- ----AMDSLQ QLQPNY---- ---------- BACU000186/1-721 AMSRNSSLPS EQHGDDLIVT PFAQVLASLR SVRNNFTVLT NLHGTSNKRS ENSBTAP00000011390/1-721 AMSRNSSLPS EQHGDDLIVT PFAQVLASLR SVRNNFTLLT NLHGTSNKRS 201 250 ENSTTRP00000007622/1-736 PAASQPSVSR VNLPXXXXXX XXXXXXXXXX XXXXXXXXIQ TYRSVSEMAS ENSP00000332116/1-736 PAASQPPVSR VNPQEESYQK LAMETLEELD WCLDQLETIQ TYRSVSEMAS bmy_21719T0/1-577 -------MSV CLFAEESYQK LAMETLEELD WCLDQLETIQ TYRSVSEMAS BACU000186/1-721 PAASQPSVSR VNLPEESYQK LAMETLEELD WCLDQLETIQ TYRSVSEMAS ENSBTAP00000011390/1-721 PAAGQPSVSR VNLPEESYQK LAMETLEELD WCLDQLETIQ TYRSVSEMAS 251 300 ENSTTRP00000007622/1-736 N--------- ----KXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332116/1-736 N--------- ----KFKRML NRELTHLSEM SRSGNQVSEY ISNTFLDKQN bmy_21719T0/1-577 NKNFFLIDAV RNVFKFKRML NRELTHLSEM SRSGNQVSEY ISNTFLDKQN BACU000186/1-721 N--------- ----KFKRIL NRELTHLSEM SRSGNQESEY ISNTFLDKQN ENSBTAP00000011390/1-721 N--------- ----KFKRML NRELTHLSEM SRSGNQVSEY ISNTFLDKQN 301 350 ENSTTRP00000007622/1-736 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000332116/1-736 DVEIPSPTQK DREKKKKQQL MTQISGVKKL MHSSSLNNTS ISRFGVNTEN bmy_21719T0/1-577 DVEIPSPTQK DREKKKKQQL MTQISGVKKL MHSSSLNNTS IARFGVNTEN BACU000186/1-721 DVEIPSPTQK DREKKKKQQL MTQISGVKKL MHSSSLNNTS IARFGVNTEN ENSBTAP00000011390/1-721 DVEIPSPTQK DREKKKKQQL MTQISGVKKL MHSSSLNNTS ISRFGVNTEN 351 400 ENSTTRP00000007622/1-736 XXXXXXELED LNKWGLNIFN VAGYSHNRPL TCIMYAIFQE RDLLKTFKIS ENSP00000332116/1-736 EDHLAKELED LNKWGLNIFN VAGYSHNRPL TCIMYAIFQE RDLLKTFRIS bmy_21719T0/1-577 EDHLAKELED LNKWGLNIFN VAGYSHNRPL TCIMYAIFQE RDLLKTFKIS BACU000186/1-721 EDHLAKELED LNKWGLNIFN VAGYSHNRPL TCIMYAIFQE RDLLKTFKIS ENSBTAP00000011390/1-721 EDHLAKELED LNKWGLNIFN VAGYSHNRPL TCIMYAIFQE RDLLKTFKIS 401 450 ENSTTRP00000007622/1-736 SDTFVTYMMT LEDHYHADVA YHNSLHAADV AQSTHVLLST PALDAVFTDL ENSP00000332116/1-736 SDTFITYMMT LEDHYHSDVA YHNSLHAADV AQSTHVLLST PALDAVFTDL bmy_21719T0/1-577 SDTFVTYMMT LEDHYHADVA YHNSLHAADV AQSTHVLLST PALDAVFTDL BACU000186/1-721 SDTFVTYMMT LEDHYHADVA YHNSLHAADV AQSTHVLLST PALDAVFTDL ENSBTAP00000011390/1-721 SDTFVTYMMT LEDHYHADVA YHNSLHAADV AQSTHVLLST PALDAVFTDL 451 500 ENSTTRP00000007622/1-736 EILAAIFAAA IHDVDHPGVS NQFLINTNSE LALMYNDESV LENHHLAVGF ENSP00000332116/1-736 EILAAIFAAA IHDVDHPGVS NQFLINTNSE LALMYNDESV LENHHLAVGF bmy_21719T0/1-577 EILAAIFAAA IHDVDHPGVS NQFLINTNSE LALMYNDESV LENHHLAVGF BACU000186/1-721 EILAAIFAAA IHDVDHPGVS NQFLINTNSE LALMYNDESV LENHHLAVGF ENSBTAP00000011390/1-721 EILAAIFAAA IHDVDHPGVS NQFLINTNSE LALMYNDESV LENHHLAVGF 501 550 ENSTTRP00000007622/1-736 KLLQEEHCDI FQNLTKKQRQ TLRKMVIDMV LATDMSKHMS LLADLKTMVE ENSP00000332116/1-736 KLLQEEHCDI FMNLTKKQRQ TLRKMVIDMV LATDMSKHMS LLADLKTMVE bmy_21719T0/1-577 KLLQEEHCDI FQNLTKKQRQ TLRKMVIDMV LATDMSKHMS LLADLKTMVE BACU000186/1-721 KLLQEEHCDI FQNLTKKQRQ TLRKMVIDMV LATDMSKHMS LLADLKTMVE ENSBTAP00000011390/1-721 KLLQEEHCDI FQNLTKKQRQ TLRKMVIDMV LATDMSKHMS LLADLKTMVE 551 600 ENSTTRP00000007622/1-736 TKKVTSSGVL LLDNYTDRIQ VLRNMVHCAD LSNPTKSLEL YRQWTDRIME ENSP00000332116/1-736 TKKVTSSGVL LLDNYTDRIQ VLRNMVHCAD LSNPTKSLEL YRQWTDRIME bmy_21719T0/1-577 TKKVTSSGVL LLDNYTDRIQ VLRNMVHCAD LSNPTKSLEL YRQWTDRIME BACU000186/1-721 TKKVTSSGVL LLDNYTDRIQ VLRNMVHCAD LSNPTKSLEL YRQWTDRIME ENSBTAP00000011390/1-721 TKKVTSSGVL LLDNYTDRIQ VLRNMVHCAD LSNPTKSLEL YRQWTDRIME 601 650 ENSTTRP00000007622/1-736 EFFQQGDKER ERGMEISPMC DKHTASVEKS QVGFIDYIVH PLWETWADLV ENSP00000332116/1-736 EFFQQGDKER ERGMEISPMC DKHTASVEKS QVGFIDYIVH PLWETWADLV bmy_21719T0/1-577 EFFQQGDKER ERGMEISPMC DKHTASVEKS QVGFIDYIVH PLWETWADLV BACU000186/1-721 EFFQQGDKER ERGMEISPMC DKHTASVEKS QVGFIDYIVH PLWETWADLV ENSBTAP00000011390/1-721 EFFQQGDKER ERGMEISPMC DKHTASVEKS QVGFIDYIVH PLWETWADLV 651 700 ENSTTRP00000007622/1-736 QPDAQDILDT LEDNRNWYQS MIPQSPSPPL DEQNRDCQGL MEKFQFELTL ENSP00000332116/1-736 QPDAQDILDT LEDNRNWYQS MIPQSPSPPL DEQNRDCQGL MEKFQFELTL bmy_21719T0/1-577 QPDAQDILDT LEDNRNWYQS MIPQSPSPPL DEQNRDCQGL MEKFQFELTL BACU000186/1-721 QPDAQDILDT LEDNRNWYQS MIPQSPSPPL DEQNRDCQGL MEKFQFELTL ENSBTAP00000011390/1-721 QPDAQDILDT LEDNRNWYQS MIPQSPSPPL DEQNRDCQGL MEKFQFELTL 701 750 ENSTTRP00000007622/1-736 EEEDSEGPEK EGEGHNYFSN TKTLCVIDPE DRDSLGETDV DITTEDKSPI ENSP00000332116/1-736 DEEDSEGPEK EGEGHSYFSS TKTLCVIDPE NRDSLGETDI DIATEDKSPV bmy_21719T0/1-577 EEEDSEGPEK EGEGHSYFSN TKTLCVIDPE NRDSLGETDV DITTEDKSPI BACU000186/1-721 EEEDSEGPEK EGEGHNYFGN TKTLCVIDPE NRDSLGETDV DITTEDKSPI ENSBTAP00000011390/1-721 EEEDSEGPEK DGEGHSYFGS TKTLCVIDPE NRDPLGETEV DITTEDKSPI 751 800 ENSTTRP00000007622/1-736 DT ENSP00000332116/1-736 DT bmy_21719T0/1-577 DT BACU000186/1-721 DT ENSBTAP00000011390/1-721 DT