KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:37 2014 Check: 00 .. Name: bmy_10873T0/1-371 Len: 463 Check: 6747 Weight: 1.00 Name: ENSTTRP00000009762/1-394 Len: 463 Check: 7371 Weight: 1.00 Name: ENSP00000444948/1-393 Len: 463 Check: 7721 Weight: 1.00 Name: ENSBTAP00000011399/1-460 Len: 463 Check: 5399 Weight: 1.00 // 1 50 bmy_10873T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009762/1-394 ---------- ---------- ---------- ---------- ---------- ENSP00000444948/1-393 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011399/1-460 VCAHMCVGLW GPWPGAHGPE GPVCPGVRGV CRWMTAAPQE PPAQPPQAGS 51 100 bmy_10873T0/1-371 ---------M RSTTLLALLA VVLLYLVSGA LVFQALEQPH EQQAQRELGE ENSTTRP00000009762/1-394 ---------M RSTTLLALLA VVLLYLVSGA LVFQALEQPH EQQAQRELGE ENSP00000444948/1-393 ---------M RSTTLLALLA LVLLYLVSGA LVFRALEQPH EQQAQRELGE ENSBTAP00000011399/1-460 GVGRAPGRAM RSTTLLALLA LVLLYLVSGA LVFQALEQPH EQQAQRELGE 101 150 bmy_10873T0/1-371 VREKFLRAHP CVSDQDLGLF IKEVADALGG GANPDTNSTS NSSHSAWDLG ENSTTRP00000009762/1-394 VREKFLRAHP CVSDQDLGLF IKEVADALGG GANPDTNSTR NSNHSAWDLG ENSP00000444948/1-393 VREKFLRAHP CVSDQELGLL IKEVADALGG GADPETNSTS NSSHSAWDLG ENSBTAP00000011399/1-460 VREKFLRAHP CVSDQDLGLF IKDVADALGG GANPDTNSTS NSNHSAWDLG 151 200 bmy_10873T0/1-371 SAFFFSGTII TTIGYGNAAL RTDAGRLFCI FYALVGIPLF GILLAGVGDR ENSTTRP00000009762/1-394 SAFFFSGTII TTIXXXXXXX XTDAARLFCI FYAMKRIPVF GI-LTEVGDR ENSP00000444948/1-393 SAFFFSGTII TTIGYGNVAL RTDAGRLFCI FYALVGIPLF GILLAGVGDR ENSBTAP00000011399/1-460 SAFFFSGTII TTIGYGNAAL RTDAGRLFCI FYALVGIPLF GILLAGVGDR 201 250 bmy_10873T0/1-371 LGSSLRRGIG HIEAIFLRWH VPPGLVRILS AVLFLLLGCL LFVLTPTFVF ENSTTRP00000009762/1-394 KELYIRRSND HIEAIFMKWQ VPPELVRILS AVLFLLIGCL LFVLTPTFVF ENSP00000444948/1-393 LGSSLRHGIG HIEAIFLKWH VPPELVRVLS AMLFLLIGCL LFVLTPTFVF ENSBTAP00000011399/1-460 LGSSLRRGIG HIEAIFLKWH VPPGLVRILS AVLFLLIGCL LFVLTPTFVF 251 300 bmy_10873T0/1-371 CYVEGWSKLE AIYFVVVTLT TVGFGDYVAG ASPNQNSAAY QPLVWFWILL ENSTTRP00000009762/1-394 CYVEGWSKLE AIYFVVVTLT TVGFGDYVAG ASPNQNSAAY QPLVWFWILL ENSP00000444948/1-393 CYMEDWSKLE AIYFVIVTLT TVGFGDYVAG ADPRQDSPAY QPLVWFWILL ENSBTAP00000011399/1-460 CYMEGWSKLE AIYFVVVTLT TVGFGDYVAG ASPNQNFAAY QPLVWFWILL 301 350 bmy_10873T0/1-371 GLAYFASVLT TIGNWLRVVS RRTRAE---- ---------- ALAKSSGHRG ENSTTRP00000009762/1-394 GLAYFASVLT TIGNWLRVVS RRTRAEMGGL TAQAASWTGT VTARVTQRVG ENSP00000444948/1-393 GLAYFASVLT TIGNWLRVVS RRTRAEMGGL TAQAASWTGT VTARVTQRAG ENSBTAP00000011399/1-460 GLAYFASVLT TIGNWLRVVS RRTRAEMGGL TAQAASWTGT VTARVTQRVG 351 400 bmy_10873T0/1-371 SGKSSP--HD IRNLWTTATL SQPKLNVPLP TVREDSE--- ---LEGSSVG ENSTTRP00000009762/1-394 PTAPPPPEKE RPPLLPPPCP AQPASRPLSP AAPEKTE--- ---PPSPPTA ENSP00000444948/1-393 PAAPPP-EKE QPLLPPPPCP AQPLGRPRSP SPPEKAQ--- ---PPSPPTA ENSBTAP00000011399/1-460 PTAPPPLEKE RPPLPPPPCT AQPASRPLSP AAPEKTEPSS PPSPPTPPTA 401 450 bmy_10873T0/1-371 GKTRWSYNQK AGHD-SDGYR SEIG------ ----RDHFLT KQLQRYIEGL ENSTTRP00000009762/1-394 SALDYPSENL AFIDESSDTQ SERGCALPRA PRGSRRPLNT PRKPARPRGP ENSP00000444948/1-393 SALDYPSENL AFIDESSDTQ SERGCPLPRA PRGRRRP-NP PRKPVRPRGP ENSBTAP00000011399/1-460 SALDYPSENL AFIDESSDTQ SERGCALPRA PRGRRRPLNP PRKPSRPRGP 451 500 bmy_10873T0/1-371 KRRRNKRLQV MVI ENSTTRP00000009762/1-394 GRPRDKGVPA --- ENSP00000444948/1-393 GRPRDKGVPV --- ENSBTAP00000011399/1-460 GRPRDKGVPA ---