KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:38 2014 Check: 00 .. Name: bmy_22016T0/1-445 Len: 756 Check: 3823 Weight: 1.00 Name: BACU011811/1-206 Len: 756 Check: 607 Weight: 1.00 Name: ENSP00000367075/1-748 Len: 756 Check: 6571 Weight: 1.00 Name: ENSTTRP00000015373/1-750 Len: 756 Check: 7262 Weight: 1.00 Name: ENSBTAP00000011402/1-583 Len: 756 Check: 8874 Weight: 1.00 // 1 50 bmy_22016T0/1-445 MTDSSQEGIV FDTL------ --------SE ASDKTTCYEL IFIGRNKKNR BACU011811/1-206 MSGSGRKDFD VKHILRLRWK LFSHPSQSPG APAGGSFLQE DGSSSFEHWG ENSP00000367075/1-748 MSGSGRKDFD VKHILRLRWK LFSHPSPSTG GPAGGGCLQQ DGSGSFEHWG ENSTTRP00000015373/1-750 MSGSGRKDFD VKHILRLRWK LFSHPSQSPG APAGGSCLQE DSSSSFEHWG ENSBTAP00000011402/1-583 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_22016T0/1-445 GTVFRRLELN KPCGFKLYLE HLKILADLEN HTLFKNDLEC QKLILEAMKY BACU011811/1-206 PSQSRLLKSQ EKGSVSTFWK K----PSSSS SSSSSASPSS SSSSLNPLNG ENSP00000367075/1-748 PSQSRLLKSQ ERSGVSTFWK K----PSSSS SSSS--SPSS SSSSFNPLNG ENSTTRP00000015373/1-750 PSQSRLLKSQ EKGSVSTFWK K----PSSSS SSSSSASPSS SSSSFDPLNG ENSBTAP00000011402/1-583 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_22016T0/1-445 HLLPERRTLM QSPRTKPRKS TVGTLYAVGG MDNNKESG-- --GSNRTYLN BACU011811/1-206 TLLPVATRLQ QGAPGQGTHQ PARTLFYVES LEEEEVPGMD FPGPHEKGLV ENSP00000367075/1-748 TLLPVATRLQ QGAPGQGTQQ PARTLFYVES LEEEVVPGMD FPGPHEKGLV ENSTTRP00000015373/1-750 TLLPVATRLQ QGAPGQGTHQ PARTLFYVES LEEEEVPGMD FPGPHEKGLV ENSBTAP00000011402/1-583 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_22016T0/1-445 YCEVRSQ--- ---------- NRRQRETIQL KSKELLGISL AHYWSSRVGV BACU011811/1-206 LQELKVEPAN SSQATGEGCG RRYSKSP--- ---------- ---------- ENSP00000367075/1-748 LQELKVEPDN SSQATGEGCG HRLSSTGHSM TPQSDLDSSS SEEFYQAVHH ENSTTRP00000015373/1-750 LQELKVEPAN SSQATGEGCG HRLSATSHSL TPQSDVDSSS SEEFYQAVHH ENSBTAP00000011402/1-583 ---------- ---------- -RLSETSHLL TPQSDMDSGS SEEFYQAVHH 201 250 bmy_22016T0/1-445 VENKFFKCFQ LKSNADLKQC IPDLNPPMRG SPLSKKELAA LPQFTSMIET BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 AEQTFRKMES YLKQQQLCDV I--LIVGNRK IPAHRLVLSS VSDYFAAMFT ENSTTRP00000015373/1-750 AEQTFRKMES YLKQQQLCDV I--LIVGNRK IPAHRLVLSS VSDYFAAMFT ENSBTAP00000011402/1-583 AEQTFRKMES YLKQQQLCDV I--LIVGNRK IPAHRLVLSS VSDYFAAMFT 251 300 bmy_22016T0/1-445 HREGEPLSQ- ------SGHG HW-------- ---------- ---------- BACU011811/1-206 ---------- ---------- -W-------- ---------- ---------- ENSP00000367075/1-748 SDVCEAKQEE IKMEGIDPNA LWDLVQFAYT GCLELKEDTI ENLLAAACLL ENSTTRP00000015373/1-750 SDVCEAKQEE IKMEGIDPNA LWDLVQFAYT GCLELKEETI ENLLAAASLL ENSBTAP00000011402/1-583 SDVCEAKQEE IKMEGIDPNA LWDLVQFAYT GCLELKEETI ENLLAAACLL 301 350 bmy_22016T0/1-445 ---------- ------VAPV ESAASPRGPE ARACTGSTTS TSWWRTRTPA BACU011811/1-206 ---------- ---------- ---GIQAF-- ---------- ---------- ENSP00000367075/1-748 QLPQVVEVCC HFLMKLLHPS NCLGIRAFAD AQGCIELMKV AHSYTMENIM ENSTTRP00000015373/1-750 QLPQVVEVCC HFLMKLLHPS NCLGIRAFAD AQGCIELMKV AHSYTMENIM ENSBTAP00000011402/1-583 QLPQVVEVCC HFLMKLLHPS NCLGIRAFAD AQGCIELMKV AHSYTMENIM 351 400 bmy_22016T0/1-445 QRQRAA---- ------HPHT ASGGTWSPEK P--------- ---------- BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 EVIRNQEFLL LPAEELHKLL ASDDVNVPDE ETIFHALMMW VKYDMQSRCN ENSTTRP00000015373/1-750 EVMRNQEFLL LPAEELHKLL ASDDVNVPDE ETIFHALMMW VKYDMQRRCN ENSBTAP00000011402/1-583 EVIRNQEFLL LPAEELHKLL ASDDVNVPDE ETIFHALMMW VKYDMQRRCN 401 450 bmy_22016T0/1-445 ---------- ---------- -FQEENXLRQ EGRPEKIQTK AGEATVKFLR BACU011811/1-206 ---------- ---------- ---------- ---------- -LNFHSFPPT ENSP00000367075/1-748 DLSMLLAFIR LPLLPPQILA DLENHALFKN DLECQKLILE AMKYHLLPER ENSTTRP00000015373/1-750 DLSMLLAFIR LPLLPPQILA DLENHTLFKN DLECQKLILE AMKYHLLPER ENSBTAP00000011402/1-583 DLSMLLAFIR LPLLPPQILA DLENHALFKN DLECQKLILE AMKYHLLPER 451 500 bmy_22016T0/1-445 RCHLDEGMKN SVKWELNPEI VAGHFLRNLG ATTIEKYDLR TNLWIQAGMM BACU011811/1-206 PCAL------ ---------- ---------- ---------- ---------- ENSP00000367075/1-748 RTLMQSPRTK PRKSTVGTLY AVGGMDNNKG ATTIEKYDLR TNLWIQAGMM ENSTTRP00000015373/1-750 RTLMQSPRTK PRKSTVGTLY AVGGMDNNKG ATTIEKYDLR TNLWIQAGMM ENSBTAP00000011402/1-583 RTLMQSPRTK PRKSTVGTLY AVGGMDNNKG ATTIEKYDLR TNLWIQAGMM 501 550 bmy_22016T0/1-445 NGRRLQFGVA VIDDKLFVIG GRDGLKTLNT VECYNPKTKT WTVLPPMSTH BACU011811/1-206 ---------V VTKSKMF--- ---------Q VENFG----- ---------- ENSP00000367075/1-748 NGRRLQFGVA VIDDKLFVIG GRDGLKTLNT VECYNPKTKT WTVLPPMSTH ENSTTRP00000015373/1-750 NGRRLQFGVA VIDDKLFVIG GRDGLKTLNS VECYNPKTKT WTVLPPMSTH ENSBTAP00000011402/1-583 NGRRLQFGVA VIDDKLFVIG GRDGLKTLNT VECYNPKTKT WTVLPPMSTH 551 600 bmy_22016T0/1-445 RHGL------ APNYNMENMN TKSFFPD--- ---------- ---------- BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 RHGLGVTVLE GPIYAVGGHD GWSYLNTVER WDPQSQQWTF VASMSIARST ENSTTRP00000015373/1-750 RHGLGVTVLE GPIYAVGGHD GWSYLNTVER WDPQSQQWTF VASMSIARST ENSBTAP00000011402/1-583 RHGLGVTVLE GPIYAVGGHD GWSYLNTVER WDPQSQQWTF VASMSIARST 601 650 bmy_22016T0/1-445 ---------- ---------- --NSVPFY-- ---------- ---------- BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 VGVAALNGKL YSVGGRDGSS CLSSMEYYDP HTNKWNMCAP MCKRRGGVGV ENSTTRP00000015373/1-750 VGVAALNGKL YSVGGRDGSS CLSSMEYYDP HTNKWNMCAP MCKRRGGVGV ENSBTAP00000011402/1-583 VGVAALNGKL YSVGGRDGSS CLSSMEYYDP HTNKWNMCAP MCKRRGGVGV 651 700 bmy_22016T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 ATCDGFLYAV GGHDAPASNH CSRLLDYVER YDPKTDTWTM VAPLSMPRDA ENSTTRP00000015373/1-750 ATCDGFLYAV GGHDAPASNH CSRLLDYVER YDPKTDTWTM VAPLSMPRDA ENSBTAP00000011402/1-583 ATCDGFLYAV GGHDAPASNH CSRLLDYVER YDPKTDTWTM VAPLSMPRDA 701 750 bmy_22016T0/1-445 ---------- ---------- ---------- ---------- ---------- BACU011811/1-206 ---------- ---------- ---------- ---------- ---------- ENSP00000367075/1-748 VGVCLLGDRL YAVGGYDGQT YLNTMESYDP QTNEWTQMAS LNIGRAGACV ENSTTRP00000015373/1-750 VGVCLLGDRL YAVGGYDGQT YLNTMESYDP QTNEWTQMAS LNIGRAGACV ENSBTAP00000011402/1-583 VGVCLLGDRL YAVGGYDGQT YLNTMESYDP QTNEWTQMAS LNIGRAGACV 751 800 bmy_22016T0/1-445 ------ BACU011811/1-206 ------ ENSP00000367075/1-748 VVIKQP ENSTTRP00000015373/1-750 VVIKQP ENSBTAP00000011402/1-583 VVIKQP