KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:40 2014 Check: 00 .. Name: ENSP00000368799/1-674 Len: 698 Check: 7625 Weight: 1.00 Name: ENSBTAP00000011412/1-674 Len: 698 Check: 94 Weight: 1.00 Name: bmy_18481T0/1-698 Len: 698 Check: 9463 Weight: 1.00 Name: BACU012158/1-141 Len: 698 Check: 9251 Weight: 1.00 // 1 50 ENSP00000368799/1-674 MQSREDAPRS RRLASPRGGK RPKKIHKPTV SAFFTGPEEL KDTAHSAALL ENSBTAP00000011412/1-674 MQSREESSRS RRLASPRGGK RPKRVHKPTV SAFFTGPEEL KDTGHSAALL bmy_18481T0/1-698 MQSREEASRS RRLASPRGGK RPKRVHKPTV SAFFTGPEEL KDTAHSAALL BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000368799/1-674 AQLKSFYDAR LLCDVTIEVV TPGSGPGTGR LFPCNRNVLA AACPYFKSMF ENSBTAP00000011412/1-674 AQLKSFYDAR LLCDVTIEVV TPGSGPGTGR LFPCNRNVLA AACPYFKSMF bmy_18481T0/1-698 AQLKSFYDAR LLCDVTIEVV TPGSGPGTGR LFPCNRNVLA AACPYFKSMF BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000368799/1-674 TGGMYESQQA SVTMHDVDAE SFEVLVDYCY TGRVSLSEAN VERLYAASDM ENSBTAP00000011412/1-674 TGGMYESHQT NVTMHDVDAE SFEVLVDYCY TGRVSLSESN VERLYAASDM bmy_18481T0/1-698 TGGMYESHQT NVTMHDVDAE SFEVLVDYCY TGRVSLSEXN VZRLYAASDM BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000368799/1-674 LQLEYVREAC ASFLARRLDL TNCTAILKFA DAFGHRKLRS QAQSYIAQNF ENSBTAP00000011412/1-674 LQLEYVREAC ASFLARRLDL ANCTAIFKFA DAFGHRKLRS QAQSFIAHNF bmy_18481T0/1-698 LQLEYVREAC ASFLARRLDL ANCTAIFKFA DAFGHRKLRS QAQSFIAHNF BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000368799/1-674 KQLSHMGSIR EETLADLTLA QLLAVLRLDS LDVESEQTVC HVAVQWLEAA ENSBTAP00000011412/1-674 KQLSQMSPIR EESLADLTLA QLLTVLRLDS LNIEHEQTVC HVAVQWLEAA bmy_18481T0/1-698 KQLSQMSSIR EESLADLTLA QLLAVLRLDS LNIEHEQTVC HVAVQWLEAA BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000368799/1-674 PKERGPSAAE VFKCVRWMHF TEEDQDYLEG LLTKPIVKKY CLDVIEGALQ ENSBTAP00000011412/1-674 PKERGPSAAE VFKCVRWTHF SDEDRGYVEE LLTNTVVKKY CLDLVEGARQ bmy_18481T0/1-698 PKERGPSAAE VFKCVRWTHF TDEDRNYLEG LLTNTMVKKY CLDLVEGARQ BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000368799/1-674 MRYGDLLYKS LVPVPNSSSS SS-------- ---------- ------SSNS ENSBTAP00000011412/1-674 MRYGDMLCKS LVPKPESSGG GG-------- ---------- ------SSSS bmy_18481T0/1-698 MRYGDMLCKS LVPKPESSSG GGGSGSGSGG VVSSVVSGAG GGGGGCSSSS BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000368799/1-674 LVSAAENPPQ RLGMCAKEMV IFFGHPRDPF LCCDPYSGDL YKVPSPLTCL ENSBTAP00000011412/1-674 VVPMSDHLPQ RLGVYAKKMV IFFGHPRDPF LCCDPYSGDI YKVPSPLTCL bmy_18481T0/1-698 VVSVAENPPQ RLGVYAKKMV IFFGHPRDPF LCCDPYSGDI YKVPSPLTCL BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000368799/1-674 AHTRTVTTLA VCISPDHDIY LAAQPRTDLW VYKPAQNSWQ QLADRLLCRE ENSBTAP00000011412/1-674 AHTRTVTTLA VCVSPDHDIY LAAQPRKDLW VYKPAQNSWQ QLADRLLCRE bmy_18481T0/1-698 AHTRTVTTLA VCVSPDHDIY LAAQPRKDLW VYKPAQNSWQ QLADRLLCRE BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000368799/1-674 GMDVAYLNGY IYILGGRDPI TGVKLKEVEC YNVKRNQWAL VAPLPHSFLS ENSBTAP00000011412/1-674 GMDVAYLNGY IYILGGRDPI TGIKLKEVEC YSVQRNQWAL VAPLPHSFIS bmy_18481T0/1-698 GMDVAYLNGY IYILGGRDPI TGIKLKEVEC YSVQRNQWAL VAPLPHSFIS BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000368799/1-674 FDLMVIRDYL YALNSKRMFC YDPSHNMWLK CVSLKRNDFQ EACVFNEEIY ENSBTAP00000011412/1-674 FDLMVIQNYL YALNSKRMFC FDPSHNMWLK CVSLKRNDFQ EACVFNDEIY bmy_18481T0/1-698 FDLMVIQNYL YALNSKRMFC FDPSHNMWLK CVSLKRNDFQ EACVFNDEIY BACU012158/1-141 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000368799/1-674 CICDIPVMKV YNPVRAEWRQ MNNIPLVSET NNYRIIKHGQ KLLLITSRTP ENSBTAP00000011412/1-674 CICDIPVMKV YNPVRGEWRQ INNIPLVSET NNYRIINHGQ KLLLITSRTP bmy_18481T0/1-698 CICDIPVMKV YNPVRGEWRQ INNIPLVSET NNYRIINHGQ KLLLITSRTP BACU012158/1-141 -------MKV YNPVRGEWRQ INNIPLVSET NNYRIINHGQ KLLLITSRTP 601 650 ENSP00000368799/1-674 QWKKNRVTVY EYDIRGDQWI NIGTTLGLLQ FDSNFFCLSA RVYPSCLEPG ENSBTAP00000011412/1-674 QWKKNRVTVY EYDMRGDQWI NIGTTLGLFQ FDSNFFCLSA RVYPSCLEPG bmy_18481T0/1-698 QWKKNRVTVY EYDIRGDQWI NIGTTLGLFQ FDSNFFCLSA RVYPSCLEPG BACU012158/1-141 QWKKNRVTVY EYDIRGDQWI NIGTTLGLFQ FDSNFFCLSA RVYPSCLEPG 651 700 ENSP00000368799/1-674 QSFLTEEEEI PSESSTEWDL GGFSEPDSES GSSSSLSDDD FWVRVAPQ ENSBTAP00000011412/1-674 QSFLTEEEEV PSESSTEWDL GGFSELDSES GSSSSLSDDD LWVQVAPQ bmy_18481T0/1-698 QSFLTEEEEV PSESSTEWDL GGFSELDSES GSSSSLSDDD LWVQVAPQ BACU012158/1-141 QSFLTEEEEV PSESSTEWDL GGFSELDSES GSSSSLSDDD LWVQVAPQ