KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:41 2014 Check: 00 .. Name: bmy_10056T0/1-284 Len: 481 Check: 9256 Weight: 1.00 Name: ENSTTRP00000011348/1-423 Len: 481 Check: 2082 Weight: 1.00 Name: BACU001160/1-472 Len: 481 Check: 3275 Weight: 1.00 Name: ENSP00000367848/1-452 Len: 481 Check: 8724 Weight: 1.00 Name: ENSBTAP00000011434/1-450 Len: 481 Check: 803 Weight: 1.00 // 1 50 bmy_10056T0/1-284 MD----ALAW L--------- -LPPLLLLCA QQHRGT---- -------RAM ENSTTRP00000011348/1-423 ---------- ---------- ---------- ---------- --------AM BACU001160/1-472 MDQGTPAPAS LHSCRNGHLV PAPALSTRCT QPSPGATLWA CGESGLCRAM ENSP00000367848/1-452 MD----APAR L--------- -LAPLLLLCA QQLRGT---- -------RAM ENSBTAP00000011434/1-450 MD----ELAW L--------- -LPPLLLLCA Q-HRGA---- -------RAM 51 100 bmy_10056T0/1-284 NDIGDYVGSN LEISWLPNLD GLIEGYARNF RPGIGGPPVN VALAIEVASI ENSTTRP00000011348/1-423 NDIGDYVGSN LEISWLPNLD GLIEGYARNF RPGIGGPPVN VALAIEVASI BACU001160/1-472 NDIGDYVGSN LEISWLPNLD GLIQGYARNF RPGIGGPPVN VALAIEVASI ENSP00000367848/1-452 NDIGDYVGSN LEISWLPNLD GLIAGYARNF RPGIGGPPVN VALALEVASI ENSBTAP00000011434/1-450 NDIGDYVGSN LEISWLPNLD GLIEGYARNF RPGIGGPAVN VALAIEVASI 101 150 bmy_10056T0/1-284 DHISEANMEY TMTVFLHQSW RDSRLSYNHT NETLGLDSRF VDKLWLPDTF ENSTTRP00000011348/1-423 DHISEANMEY TMTVFLHQSW RDSRLSYNHT NETLGLDSRF VDKLWLPDTF BACU001160/1-472 DHISEANMEY TMTVFLHQSW RDSRLSYNHT NETLGLDSRF VDKLWLPDTF ENSP00000367848/1-452 DHISEANMEY TMTVFLHQSW RDSRLSYNHT NETLGLDSRF VDKLWLPDTF ENSBTAP00000011434/1-450 DHISEVNMEY TMTVFLHQSW RDSRLSYNHT NETLGLDSRF VDKLWLPDTF 151 200 bmy_10056T0/1-284 IVNAKSAWFH DVTVENKLIR LQPDGVILYS IRITSTVACD MDLAKYPMDE ENSTTRP00000011348/1-423 IVNAKSAWFH DVTVENKLIR LQPDGVILYS IRITSTVACD MDLAKYPMDE BACU001160/1-472 IVNAKSAWFH DVTVENKLIR LQPDGVILYS IRITSTVACD MDLAKYPMDE ENSP00000367848/1-452 IVNAKSAWFH DVTVENKLIR LQPDGVILYS IRITSTVACD MDLAKYPMDE ENSBTAP00000011434/1-450 IVNAKSAWFH DVTVENKLIR LQPDGVILYS IRITSTVACD MDLAKYPMDE 201 250 bmy_10056T0/1-284 QECMLHLESY GYSSEDIVYY WSENQGQIHG LDRLQLAQFT ITSYRFTTEL ENSTTRP00000011348/1-423 QECMLH-ESX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU001160/1-472 QECMLHLESY GYSSEDIVYY WSENQGQIHG LDRLQLAQFT ITSYRFTTEL ENSP00000367848/1-452 QECMLDLESY GYSSEDIVYY WSESQEHIHG LDKLQLAQFT ITSYRFTTEL ENSBTAP00000011434/1-450 QECMLHLESY GYSSEDIVYY WSENQEQIHG LDKLQLAQFT ITSYRFTTEL 251 300 bmy_10056T0/1-284 MNFKSGNAAS R--------- --GLFLVSPA GGFLVLSA-- ---------- ENSTTRP00000011348/1-423 XXXXXXGQFP RLSLHVHLRR NRGVYIIQSY MPSILLVAMS WVSFWISQAA BACU001160/1-472 MNFKSAGQFP RLSLHVHLRR NRGVYIIQSY MPSILLVAMS WVSFWISQAA ENSP00000367848/1-452 MNFKSAGQFP RLSLHFHLRR NRGVYIIQSY MPSVLLVAMS WVSFWISQAA ENSBTAP00000011434/1-450 MNFKSAGQFP RLSLHFHLRR NRGVYIIQSY MPSVLLVAMS WVSFWISQAA 301 350 bmy_10056T0/1-284 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011348/1-423 VPARVSLGIT TVLTMTTLMV SARSSLPRAS AIKALDVYFW ICYVFVFAAL BACU001160/1-472 VPARVSLGIT TVLTMTTLMV SARSSLPRAS AIKALDVYFW ICYVFVFAAL ENSP00000367848/1-452 VPARVSLGIT TVLTMTTLMV SARSSLPRAS AIKALDVYFW ICYVFVFAAL ENSBTAP00000011434/1-450 VPARVSLGIT TVLTMTTLMV SARSSLPRAS AIKALDVYFW ICYVFVFAAL 351 400 bmy_10056T0/1-284 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011348/1-423 VEYAFAHFNA DYRKKQ---- KAKVKVKEQR VEMDVKNAIV LFSLSAAGVT BACU001160/1-472 VEYAFAHFNA DYRKKQ---- KAKVKVKEQR AEMDVKNAIV LFSLSAAGVT ENSP00000367848/1-452 VEYAFAHFNA DYRKKQ---- KAKVKVSRPR AEMDVRNAIV LFSLSAAGVT ENSBTAP00000011434/1-450 VEYAFAHFNA DYRKKQKAKA KAKVKVKEQR AEMDVKNAIV LFSLSAAGVT 401 450 bmy_10056T0/1-284 EPLAGPEGPR RLQ---LENR WSAQAVPGRA ARDEP----- ---------- ENSTTRP00000011348/1-423 QELAASRRQC RAPGNLMGSY RSVEVETEET KKQGA----- PGGLRALFKP BACU001160/1-472 QELAVSRRQC RVPRNLMGSY RSVEVETEET KKQGA----- QGGLRALFKP ENSP00000367848/1-452 QELAISRRQR RVPGNLMGSY RSVGVETGET KKEGAARSGG QGGIRARLRP ENSBTAP00000011434/1-450 QELAVSRRPC RLPGNLMGSY RSVEVETGET KKQGS----- QGGLRGLLKP 451 500 bmy_10056T0/1-284 ---------- ---------- ---------- - ENSTTRP00000011348/1-423 IDADTIDIYA RAVFPAAFAA VNVIYWAAYA M BACU001160/1-472 IDADTIDIYA RAVFPAAFAA VNVIYWAAYT M ENSP00000367848/1-452 IDADTIDIYA RAVFPAAFAA VNVIYWAAYA M ENSBTAP00000011434/1-450 IDADTIDIYA RAVFPAAFAA VNVIYWAAYT M