KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:41 2014 Check: 00 .. Name: ENSTTRP00000013848/1-683 Len: 806 Check: 4988 Weight: 1.00 Name: bmy_18171T0/1-455 Len: 806 Check: 1193 Weight: 1.00 Name: BACU013598/1-609 Len: 806 Check: 8283 Weight: 1.00 Name: ENSP00000267260/1-611 Len: 806 Check: 3782 Weight: 1.00 Name: ENSBTAP00000011438/1-562 Len: 806 Check: 4309 Weight: 1.00 // 1 50 ENSTTRP00000013848/1-683 RKPAQRSLPG ARRLCKLRAQ PRADPERREG AQAFSLPCRP GLRPIPRPEP bmy_18171T0/1-455 ---------- ---------- ---------- ---------- ---------- BACU013598/1-609 ---------- ---------- ---------- ---------- ---------- ENSP00000267260/1-611 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011438/1-562 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000013848/1-683 LSLPPHPSGL TRTESRAGCP RPEASFQHFG QRPGPGPFWL AMASVQQGEK bmy_18171T0/1-455 ---------- ---------- ---------- ---------- ---------- BACU013598/1-609 ---------- ---------- ---------- ---------- -MTPNCAETS ENSP00000267260/1-611 ---------- ---------- ---------- ---------- -MASVQQGEK ENSBTAP00000011438/1-562 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000013848/1-683 QLFEKFWRGT FKAVATPRPE SI--IVASIT ARKPLPRTEP QSSPMVPAQD bmy_18171T0/1-455 ---------- ---------- ---------- ---------- MTPPSRPLED BACU013598/1-609 HLITLACCIA HLALPSGRIH CRENFLTKLS IVAPTSRTEP QSSPMVPAQD ENSP00000267260/1-611 QLFEKFWRGT FKAVATPRPE SI--IVASIT ARKPLPRTEP QNNPVVPAQD ENSBTAP00000011438/1-562 ---------- ---------- ---------- ----LYRTEP QSSPMVPAQD 151 200 ENSTTRP00000013848/1-683 GPSEKLSQPL ATEVLGPNSW ERGKACQEAS PARAHSASQG KDLTPPPSSR bmy_18171T0/1-455 RFAAKLG--- ---IQG---- QRAVMCIEEK FPADEEELVK DDLHSPQTQR BACU013598/1-609 GPSEKLSQPL ATEVLGSNSW ERGKACREAS PARAHSASQG KDLTPPPSSR ENSP00000267260/1-611 GPSEKLGQHL ATEPLGTNSW ERDKTCRELG ATRGHSASHD KDLTPPPSSR ENSBTAP00000011438/1-562 GPSEKLSQHL ASKVLGTNSW DRGKACREPS PTRARSASHS KDLTPLPSSR 201 250 ENSTTRP00000013848/1-683 GKKKKKKATR KKRRRSPSYS PSPVKKKKKK SSKKHKRHRS FSKKRRHSSS bmy_18171T0/1-455 ---------- ---------- ---------- ---------- ---------- BACU013598/1-609 GKKKKKKATR KKRRRSPSYS PSPVKKKKKK SSKKHKRHRS FSKKRRH--- ENSP00000267260/1-611 GKKKKKKSTR KKRRRSSSYS PSPVKKKKKK SSKKHKRRRS FSKKRRHSSS ENSBTAP00000011438/1-562 GKKKKKKATR KKRRRSPSYS PSPVKKKKKK SSKKHKRHRS FSKKRRHSSS 251 300 ENSTTRP00000013848/1-683 SPKNKRREEK RHKKQSRSRP RKSHRHRHHH CASRSQSSES RSSSCDSRHR bmy_18171T0/1-455 ---------- ---------- ---------- ---------- ---------- BACU013598/1-609 ---------- ---------- ---------- ---------- -------RHR ENSP00000267260/1-611 SPKSKRRDEK RHKKQSRSRP RKSHRHRHHR CPSRSQSSES RPSSCESRHR ENSBTAP00000011438/1-562 SPKSRRKEEK RHKKQSRSRP RKSRRRRHHH CPSRSQSSES RSSSCDSRHR 301 350 ENSTTRP00000013848/1-683 GQSPEEGRKS RRRHSRRCSK SFCKASPEAR SSPAPSQPLQ MLSFLSARGV bmy_18171T0/1-455 ---------- ----SAVSNG CFCFQ----- ---------- ---------- BACU013598/1-609 GQSPEEGRKS RRRHSRRCSK TFCKASPEAR SSPPPSQPLQ MLSFLSARGV ENSP00000267260/1-611 GRSPEEGQKS RRRHSRRCSK TLCKDSPEAQ SSRPPSQPLQ MLGYLSARGV ENSBTAP00000011438/1-562 GRSPEGGRKS RRRHSRRCSK TLCKASPEAR SSPQPSQPLQ MLSFLSARGV 351 400 ENSTTRP00000013848/1-683 ITGPG-AATL FTRTARLLAT SRGRSQEYDS GNDTSSPPSM QISSARSRGQ bmy_18171T0/1-455 IAGSGSAADL FTKTASLLTT YRGRSQEYDS GNDTSSPPSM QISSARSRGP BACU013598/1-609 IAGSGSAADL FTKTASLLTT YRGRSQEYDS GNDTSSPPSM QISSARSRGP ENSP00000267260/1-611 ITGSGSAADL FTKTASPLTT SRGRSQEYDS GNDTSSPPST QTSSARSRGQ ENSBTAP00000011438/1-562 ITGSGSAADL FTKTASPLTT SRGRSQEYDS GNDTSSPPSM QISSTRSRGQ 401 450 ENSTTRP00000013848/1-683 EKESPTGGLS KSRGPNSGNT SDSGNSFTTS SPQNEGAALE NLSPTSRGRE bmy_18171T0/1-455 EKGSPTGGLS KTRDPNSGNT SDSGNSFTTS SPQNKGATLE NLSPTSRGRE BACU013598/1-609 EKGSPTGGLS KSRDPNSGNT SDSGNSFTTS SPQNKGATLE NLSPTSRGRE ENSP00000267260/1-611 EKGSPSGGLS KSRELNSGNT SDSGNSFTTS SPQNKGAMLE NLSPTSRGRE ENSBTAP00000011438/1-562 EKGSPSGGLS KSRDPNSGNT SDSGNSFTTS SPQNKGATLE NLSPTSRGRE 451 500 ENSTTRP00000013848/1-683 SRGFQSPCLE CTEVKKSSLV PPTARSSPMR GRSRSSSCA- ---SAHSSRS bmy_18171T0/1-455 SRGFQSPCLE CTEVKKSSLV PSAARSSPMR GCSRSSSCAS THPSSHSSRS BACU013598/1-609 SRGFRSPCLE CTEVKKSSLV PSAARSSPMR GCSRSSSCAS THLSSHSSRS ENSP00000267260/1-611 SRGFQSPCLE CAEVKKSSLV PSTARSSPMK GCSRSSSYAS TRSSSHSSRS ENSBTAP00000011438/1-562 SRGFQSPCLE CTEVKKSDLV PSTARSSPMR GCSRSSSYAS TRSSSHSSRS 501 550 ENSTTRP00000013848/1-683 PNPRASPRYT RSRSTSSGKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18171T0/1-455 PNPRASP--- ---------R SSSRSPSYSS SCGKRSPPSR SSRSRRSPSY BACU013598/1-609 PNPRASPRYT RSRSISSGKR SSSRSPSYSS SSGKRSPPSR SSRSRRSPSY ENSP00000267260/1-611 PNPRASPRYT QSRSTSSEKR SYSRSPSYSS KSGKRSPPSR SSRSRRSPSY ENSBTAP00000011438/1-562 PNPRASPRYT RSRSTSSGKR SSSRSPSYSS KSGKRSPPSR SSRSRRSPSY 551 600 ENSTTRP00000013848/1-683 XXXXXX---- ---------- ---------- ---------- ---------- bmy_18171T0/1-455 SRYSPSRYRP RPQALTPPEP RADPIPCPSG GEGKGKEEVS APLPPKSQAS BACU013598/1-609 SRYSPS---- ---------- ---------- ---------- ---------- ENSP00000267260/1-611 SRYSPS---- ---------- ---------- ---------- ---------- ENSBTAP00000011438/1-562 SRYSPS---- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000013848/1-683 ---------- --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18171T0/1-455 PSSPVTSPPH PFRERDPKYS EKGSQQRERE RARRRRRSYS PMRKRRRDSP BACU013598/1-609 ---------- --RDRDPKYS EKGSQQRERE RARRRRRSYS PMRKRRRDSP ENSP00000267260/1-611 ---------- --RERDPKYS EKDSQQRERE RARRRRRSYS PMRKRRRDSP ENSBTAP00000011438/1-562 ---------- --RERNPKYI EKDSQQRERE RARRRRRSYS PMRKRRRDSP 651 700 ENSTTRP00000013848/1-683 XXXXXXXXXX ARKRPIPYYR PSPSSSSGLS ST-SSW---Y SRSASRSSSR bmy_18171T0/1-455 SHLEARRITS ARKRPIPYYR PSPSSSSGLS ST-SSW---Y SRSASRSSSR BACU013598/1-609 SHLEARRITS ARKRPIPYYR PSPSSSSGLS NIEGSWALSF LLSWGREEKR ENSP00000267260/1-611 SHLEARRITS ARKRPIPYYR PSPSSSGSLS ST-SSW---Y SSSSSRSASR ENSBTAP00000011438/1-562 SHLEARRITS ARKRPIPYYR PSPSSSSGLS ST-SSW---Y SSSSSRSASR 701 750 ENSTTRP00000013848/1-683 SPS-HSRSRS ----RSRTR- --TSSSCSSR SPSLGSRSRS R-SRSR---- bmy_18171T0/1-455 SPS-HSRSRS RSRSRSRTH- --TSSSCSSR SPSLGSRSRS R-SRSRSRSR BACU013598/1-609 VWGLQPLCRA PRSLRHTTLG LNSGLSIWSE PPSVGTEKPQ RFVRSVGSVT ENSP00000267260/1-611 SYS-RSRSRS RSRRRSRTR- --TSSSSSSR SPSPGSRSRS R-SRSRSRSR ENSBTAP00000011438/1-562 SYS-RSRSRS ----RSRTL- --SSSSCSSR SPSLGSRSRS R-SRSRSRSR 751 800 ENSTTRP00000013848/1-683 ---------- ---------- ---------- -------SYS SADSYSSTRR bmy_18171T0/1-455 SR-------- ---------- ---------- -------SYS SADSYSSTRR BACU013598/1-609 QKFGSGQENV ERVLLAHCWQ AAYEGQWYFL TPALVLLSFS LMAACVGTLI ENSP00000267260/1-611 SRSQSR---- ---------- ---------- -------SYS SADSYSSTRR ENSBTAP00000011438/1-562 SG-------- ---------- ---------- -------SYS SADSYSSTRR 801 850 ENSTTRP00000013848/1-683 ------ bmy_18171T0/1-455 ------ BACU013598/1-609 GVRGGC ENSP00000267260/1-611 ------ ENSBTAP00000011438/1-562 ------