KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:42 2014 Check: 00 .. Name: ENSP00000296795/1-904 Len: 1546 Check: 7455 Weight: 1.00 Name: ENSBTAP00000011445/1-904 Len: 1546 Check: 6481 Weight: 1.00 Name: ENSTTRP00000014796/1-904 Len: 1546 Check: 8567 Weight: 1.00 Name: BACU005168/1-1504 Len: 1546 Check: 1052 Weight: 1.00 Name: bmy_00299T0/1-947 Len: 1546 Check: 140 Weight: 1.00 // 1 50 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- --MRQTLP-C ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- --MSRPLPYH ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- --MSRDLLYC BACU005168/1-1504 ---------- ---------- ---------- ---------- --MRRYLLYR bmy_00299T0/1-947 MLKTEVGHKH NIPAFQNLEE KQPSIWIGEV QVQSCSVDMS KIMSXYLLYR 51 100 ENSP00000296795/1-904 IYFWGGLLPF GMLCASSTTK CTVSHEVADC SHLKLTQVPD DLPTNITVLN ENSBTAP00000011445/1-904 IHFFSGLLTC WILCTSSAHK CTVRHEVADC SHLKLTQIPD DLPTNITVLN ENSTTRP00000014796/1-904 IYSFLGLLPF WILCTSSTNK CTVRHEIADC SHLKLTQIPD DLPTNITVLN BACU005168/1-1504 IYSFLGLLPF WILCTSSTNK CTVRHEIADC SHLKLTQIPD DLPTNITVLN bmy_00299T0/1-947 IYSFLGLLPF WILCTSSTNK CTVRHEIADC SHLKLTQIPD DLPTNITVLN 101 150 ENSP00000296795/1-904 LTHNQLRRLP AANFTRYSQL TSLDVGFNTI SKLEPELCQK LPMLKVLNLQ ENSBTAP00000011445/1-904 LTHNQLRRLP PANFTRYSQL TILDGGFNSI SKLEPELCQS LPWLEILNLQ ENSTTRP00000014796/1-904 LTHNQLRRLP PANFTRYSQL TILDGGFNTI SKLEPELCQS LPLLEILNLQ BACU005168/1-1504 LTHNQLRRLP PDNFTRYSQL TILDGGFNSI SKLEPELCQR LPLLEILNLQ bmy_00299T0/1-947 LTHNQLRRLP PANFTRYSQL TILDGGFNSI SKLEPELCQS LPLLEILNLQ 151 200 ENSP00000296795/1-904 HNELSQLSDK TFAFCTNLTE LHLMSNSIQK IKNNPFVKQK NLITLDLSHN ENSBTAP00000011445/1-904 HNEISQLSDK TFIFCMNLTE LHLMSNSIQK IKNDPFKNLK NLIKLDLSHN ENSTTRP00000014796/1-904 HNELSQLSDK TFIFCMNLTE LHLMSNSIQK IQSNPFTEMX X-XXLDLAHN BACU005168/1-1504 HNELSQLSDK TFIFCMNLTE LHLMSNSIQK IQNNPFKNLK NLIKLNLAHN bmy_00299T0/1-947 HNELSQLSDK TFIFCMNLTE LHLMSNSIQK IQNNPFKNLK NLIKLDLAHN 201 250 ENSP00000296795/1-904 GLSSTKLGTQ VQLENLQELL LSNNKIQALK SEELDIFANS SLKKLELSSN ENSBTAP00000011445/1-904 GLSSTKLGTQ LQLENLQELL LSNNKISSLT PEEFDFLGNS SLKRLELSSN ENSTTRP00000014796/1-904 GLSSTKLGTQ LQLENLQELL LSNNKISALR REELDFLGNS SLKRLELSSN BACU005168/1-1504 GLSSTKLGTQ LQLENLQELL LSNNKISALR REELDFLGNS SLKRLELSSN bmy_00299T0/1-947 GLSSTKLGTQ LQLENLQELL LSNNKISALR REELDFLGNT SLKSLELSSN 251 300 ENSP00000296795/1-904 QIKEFSPGCF HAIGRLFGLF LNNVQLGPSL TEKLCLELAN TSIRNLSLSN ENSBTAP00000011445/1-904 QIKEFSPGCF HTLGELSGLS LNNAKLSPSL TEKLCLELSN TSIENLSLSS ENSTTRP00000014796/1-904 QIKEFSPGCF HAIGKLFGFS LNNAKLSPSL IEELCLELSN TSIQNLSLSN BACU005168/1-1504 QIMEFSPGCF HAVGKLFGFS LNNAKLSPSL IEELCLELSN TSIQNLSLSN bmy_00299T0/1-947 QITEFSPGCF HAIGKLFGFS LNNAKLSPSL IEELCLELSN TXIQNLSLSN 301 350 ENSP00000296795/1-904 SQLSTTSNTT FLGLKWTNLT MLDLSYNNLN VVGNDSFAWL PQLEYFFLEY ENSBTAP00000011445/1-904 NQLDTISHTT FDGLKQTNLT TLDLSRNSLR VMGNDSFAWL PHLEYLSLEY ENSTTRP00000014796/1-904 NQLYTTSNTT FAGLKQTNLT MLDLSHNSLS VIGNDSFAWL PHLEYLFLEY BACU005168/1-1504 NQLYTTSNKT FVGLKQTNLT VLDLSHNSLS VIGNDSFAWL PHLEYLFLEY bmy_00299T0/1-947 NQLYTTSNTT FVGLKQTNLT VLDLSHNSLS VIGNDSFAWL PHLEYLFLEY 351 400 ENSP00000296795/1-904 NNIQHLFSHS LHGLFNVRYL NLKRSFTKQS ISLASLPKID DFSFQWLKCL ENSBTAP00000011445/1-904 NNIEHLSSRS FYGLSNLRRL DLRRSFTRQS ISLTSLPKID DFSFQWLKCL ENSTTRP00000014796/1-904 NNIQHLSSRS FYGLSNVRYL NLRRSFTKQS ISLASLPKID DFSFQWLKFL BACU005168/1-1504 NNIEHLSSRS FYGLSNVRYL NLRRSFTKQS VSLASLPKID DFSFQWLKFL bmy_00299T0/1-947 NNIZHLSSRS FYGLSNVRYL NLRRSFTKQS VSLASLPKID DFSFQWLKFL 401 450 ENSP00000296795/1-904 EHLNMEDNDI PGIKSNMFTG LINLKYLSLS NSFTSLRTLT NETFVSLAHS ENSBTAP00000011445/1-904 EYLNMDDNNF PGIKRNTFTG LVRLKFLSLS NSFSSLRTLT NETFLSLAGC ENSTTRP00000014796/1-904 EYLNMEDNTF PGIKSNTFTG LTRLRCLSLS NSFSSLGTLT NETFLSLAGS BACU005168/1-1504 EYLNMEDNNF PGIKSNTFTG LTKLRCLSLS NSFSSLRTLT NETFLSLAGS bmy_00299T0/1-947 EYLNMEDNNF PGIKSNTFTG LTRLRCLSLS NSFSSLRTLT NETFLSLAGS 451 500 ENSP00000296795/1-904 PLHILNLTKN KISKIESDAF SWLGHLEVLD LGLNEIGQEL TGQEWRGLEN ENSBTAP00000011445/1-904 PLLLLNLTKN KISKIQSGAF SWLGHLEVLD LGLNEIGQEL TGQEWRGLDN ENSTTRP00000014796/1-904 PLLILNLTKN KISKIESGAF SWLGHLNVLD LGLNEIGQEL TGQEWRGLEN BACU005168/1-1504 PLLILNLTKN KISKIESGAF SWLGHLTVLD LGLNEIGQEL TGQEWRGLEN bmy_00299T0/1-947 PLLVLNLTKN KISKIESGAF SWLGHLNVLD LGLNEIGQEL TGQEWRGLEN 501 550 ENSP00000296795/1-904 IFEIYLSYNK YLQLTRNSFA LVPSLQRLML RRVALKNVDS SPSPFQPLRN ENSBTAP00000011445/1-904 IVEIYLSYNK YLELTTNSFT SVPSLQRLML RRVALKNVDC SPSPFRPLPN ENSTTRP00000014796/1-904 IVEIYLSYNK YLELTSNSFA LVPSLQRLML RRVALKNVNS SPSPFHPLPN BACU005168/1-1504 IVEIYLSYNK YLELTSNSFA LVPSLQRLML RRVALKNVDS SPSPFHPLPN bmy_00299T0/1-947 IVEIYLSYNK YLELTSNSFA LVPSLQRLML RRVALKNVDS SPSPFHPLPN 551 600 ENSP00000296795/1-904 LTILDLSNNN IANINDDMLE GLEKLEILDL QHNNLARLWK HANPGGPIYF ENSBTAP00000011445/1-904 LVILDLSNNN IANINDELLK GLEKLEILDL QHNNLARLWK HANPGGPVQF ENSTTRP00000014796/1-904 LTILDLSNNN IANINDELLK GLEKLEILDL QHNNLARLWK HANPGGPIHF BACU005168/1-1504 LTILDLSNNN IANINDELLK GLEKLEILDL QHNNLARLWK HANPGGPVHF bmy_00299T0/1-947 LTILDLSNNN IANINDELLK GLEKLEILDL QHNNLARLWK HANPGGPVHF 601 650 ENSP00000296795/1-904 LKGLSHLHIL NLESNGFDEI PVEVFKDLFE LKIIDLGLNN LNTLPASVFN ENSBTAP00000011445/1-904 LKGLFHLHIL NLGSNGFDEI PVEAFKDLRE LKSIDLGMNN LNILPQSVFD ENSTTRP00000014796/1-904 LKGLSHLHIL NLESNGFDEV PAEVFKDLRE LKSIDLGWNN LNILPPSVFD BACU005168/1-1504 LKGLSHLYIL NLESNGFDEI PAEVFKDLRE LKSIDLGLNN LNILPPSVFD bmy_00299T0/1-947 LKGLSHLYIL NLESNGFDEI PAEVFKDLRE LKSIDLGLNN LNILPPSVFD 651 700 ENSP00000296795/1-904 NQVSLKSLNL QKNLITSVEK KVFGPAFRNL TELDMRFNPF DCTCESIAWF ENSBTAP00000011445/1-904 NQVSLKSLSL QKNLITSVQK TVFGPAFRNL SYLDMRFNPF DCTCESIAWF ENSTTRP00000014796/1-904 NQVSLKSLSL QKNLITSVEK NVFGPAFKNL SNLDMSFNPF DCTCESIAWF BACU005168/1-1504 NQVLLKSLSL QKNLITSVEK NVFGPAFKNL SNLDMRFNPF DCTCESIAWF bmy_00299T0/1-947 NQVLLKSLXL QKNLITSVEK NVFGPAFKNL SNLDMRFNPF DCTCESIAWF 701 750 ENSP00000296795/1-904 VNWINETHTN IPELSSHYLC NTPPHYHGFP VRLFDTSSCK DSAPFELFFM ENSBTAP00000011445/1-904 VNWINSTHTN ISELSNHYLC NTPPQYHGYP VMLFDVSPCK DSAPFELLFM ENSTTRP00000014796/1-904 VTWINNTHTN ISELSSRYLC NTPPQYHGFP VMLFDISPCK DSAPFELLFM BACU005168/1-1504 VNWINNTHTN ISELSSRYLC NTPPQYRGFP VMLFDISPCK DSAPFELLFM bmy_00299T0/1-947 VNWINNTHTN ISELSSRYLC NTPPQYRGFP VMLFDISPCK DSAPFELLFM 751 800 ENSP00000296795/1-904 INTSILLIFI FIVLLIHFEG WRISFYWNVS VHRVLGFKEI DRQTEQFEYA ENSBTAP00000011445/1-904 ININILLIFI FIVLLIHFEG WRISFYWNVS VHRVLGFKEI DR-AEQFEYA ENSTTRP00000014796/1-904 INTSILLIFI LIVLLIHFEG WKISFYWNVS VHRVLGFKEI DRQPEQFEYA BACU005168/1-1504 INTSILLIFI FIVLLIHFEG WKISFYWNVT VHRVLGFKEI DRQPEQFEYA bmy_00299T0/1-947 INTSILLIFI FIVLLIHFEG WKISFYWNVS VHRVLGFKEI DRQPEQFEYA 801 850 ENSP00000296795/1-904 AYIIHAYKDK DWVWEHFSSM EKEDQSLKFC LEERDFEAGV FELEAIVNSI ENSBTAP00000011445/1-904 AYIIHAYKDR DWVWKHFSPM EEEDHTLRFC LEERDFEAGV LELEAIVNSI ENSTTRP00000014796/1-904 AYIIHAYKDR DWVWEHFSPM EEEDHTLRFC LEERDFDAGV LELEAIVNSI BACU005168/1-1504 AYIIHAYKDR DWVWEHFSPM EEEDHTLRFC LEERDFEAGV LELEAIVNSI bmy_00299T0/1-947 AYIIHAYKDR DWVWEHFSPM EEEDHTLRFC LEERDFEAGV LELEAIVNSI 851 900 ENSP00000296795/1-904 KRSRKIIFVI THHLLKDPLC KRFKVHHAVQ QAIEQNLDSI ILVFLEEIPD ENSBTAP00000011445/1-904 RRSRKIIFVV TQNLLKDPLC KRFKVHHAVQ QAIEQNLDSI ILIFLEEIPD ENSTTRP00000014796/1-904 RRSRKIIFVI TQNLLKDPLC KRFKVHHAVQ QAIEQNLDSI ILIFLEDIPD BACU005168/1-1504 RRSRKIIFVI TQNLLKDPLC KRFKVHHAVQ QAIEQNLDSI ILIFLEDIPD bmy_00299T0/1-947 RRSRKIIFVI TQNLLKDPLC KRFKVHHAVQ QAIEQNLDSI ILIFLEDIPD 901 950 ENSP00000296795/1-904 YKLNHALCLR RGMFKSHCIL NWPVQKERIG A--------- ---------- ENSBTAP00000011445/1-904 YKLNHALCLR RGMFKSHCIL NWPVQKERVN A--------- ---------- ENSTTRP00000014796/1-904 YKLNHALCLR RGMFKSHCIL NWPVQKERVN A--------- ---------- BACU005168/1-1504 YKLNHALCLR RGMFRSRCIL NWPIQKERTL FFTLPDLGEE WASDSDSEDG bmy_00299T0/1-947 YKLNHALCLR RGMFKSXCIL NWPIQKERVN A--------- ---------- 951 1000 ENSP00000296795/1-904 ---------- ---------- ------FRHK LQVALG---- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ------FHHK LKVALG---- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ------FHHK LQVALG---- ---------- BACU005168/1-1504 REARGVPEAS GKQSFAVKSK DPLPTHFTRN VQKAIDKYTR ESASSFSSSG bmy_00299T0/1-947 ---------- ---------- ------FHHK LQVALG---- ---------- 1001 1050 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 SPTPTEAPNS WSGSGTQSST TGLSTERSSI YSWRDDEFDK ANAQKVQQLF bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000296795/1-904 ---------- ---------- ------SKNS VH-------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ------SRNS AH-------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ------SRNS VH-------- ---------- BACU005168/1-1504 WEVEEMLFEG KVSPQTQNLR AECSEWARRS LHLRVLGRQL ILPTDEGVQH bmy_00299T0/1-947 ---------- ---------- ------SRNS VH-------- ---------- 1101 1150 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 FQGSKPASAV HRPFFDDCEP SSNIRELCIS GSQIVPAALS ALTLPGPVGT bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 GVADLTACSS LEEEVYDVDG KIEEYFAFDR KEDYPKDFSI LLRVTCSPKL bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 LDSWQYVDML EQRFPFLLTT WLRQKTRIVL SMLSKVERQL VAFVPRGSSD bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 EDCLEQNPAH HHRTWHKHGL PPVSPHDCVR DAVAAEVFDH IWTAVVEILE bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 KLIRKNWEIT LTEGKKQKEK LKVAENKSPP LVISCINADV SSVPPSRSSE bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 TRSVILASHL NPPQIHRFSN NFYSDLNGVM TIQAKPLQQR PTYSADRTQG bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 EQEDKSLGVG AGALSSAPHR LARILDARGL QTSAKKTLAY TRLPSLTSES bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ---------- BACU005168/1-1504 QRIKIPSVYS DEVLRETKLQ TGVDRTASPP VQTSRSRLPP IGSETGEQNM bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000296795/1-904 ---------- ---------- ---------- ---------- ------ ENSBTAP00000011445/1-904 ---------- ---------- ---------- ---------- ------ ENSTTRP00000014796/1-904 ---------- ---------- ---------- ---------- ------ BACU005168/1-1504 AVPGSRPVSS DTPRKGSLTL REFAGHTWTG QGFLTGRCSP YTNKMM bmy_00299T0/1-947 ---------- ---------- ---------- ---------- ------