KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:43 2014 Check: 00 .. Name: ENSP00000370192/1-463 Len: 465 Check: 630 Weight: 1.00 Name: ENSBTAP00000011448/1-458 Len: 465 Check: 2951 Weight: 1.00 Name: bmy_09555T0/1-410 Len: 465 Check: 2403 Weight: 1.00 Name: ENSTTRP00000012261/1-464 Len: 465 Check: 3566 Weight: 1.00 Name: BACU000119/1-446 Len: 465 Check: 784 Weight: 1.00 // 1 50 ENSP00000370192/1-463 -MKILFVEPA IFLSAFAMTL TGPLTTQYVY RRIWEETGNY TFSSDSNISE ENSBTAP00000011448/1-458 KMKIPFVEPV ICLSVFAVTL NSPLTTQYVY RRIWEETGNY SIALESNTSE bmy_09555T0/1-410 -MKIPFVEPA ICLSVFAMTL TAPLTTQYVY RRIWEETGNY SIAPDSNVSE ENSTTRP00000012261/1-464 -MKIPFVEPA ICFSVFAMTL TAPLTTQYVY RRIWEETGNY SIAPDSNVSE BACU000119/1-446 KMKIPFVEPA ICLSVFAMTL TAPLTTQYVY RRIWEETGNY SIAPDSNVSE 51 100 ENSP00000370192/1-463 CEKNKSSPIF AFQEEVQKKV SRFNLQMDIS GLIPGLVSTF ILLSISDHYG ENSBTAP00000011448/1-458 CAKNKSSPIF AFQEEVQKKV SLFNLEMDIS GLIPGLVSTF VFLSHSDHGG bmy_09555T0/1-410 CAKNKSSPIF AFQEEVQKKV SLFNLQMDIS GLIPGLVSTF MLLSHSDHGG ENSTTRP00000012261/1-464 CAKNKSSPIF TFQEEVQKKV SLFNLQMDIS GLIPGLVSTF MLLSHSDHGG BACU000119/1-446 CAKNKSSPIF AFQEEVQKKV SLFNLQMDIS GLIPGLVSTF MLLSHSDHGG 101 150 ENSP00000370192/1-463 RKFPMILSSV GALATSVWLC LLCYFAFPFQ LLIASTFIGA FCGNYTTFWG ENSBTAP00000011448/1-458 RKFPLILSSV GALANSAWLC LLSYFALPIQ LLIASTFIGA LFGNYTTFLG bmy_09555T0/1-410 RKFPLILSSV GALAXSAWLC LLSYFAFPIQ LLIASTFLGA LCGNYTTLLG ENSTTRP00000012261/1-464 RKFPLILSSV GALANSAWLC LLSYFAFPVQ LLIASTFLVA LCGNYTTLLG BACU000119/1-446 RKFPLILSSF GALANSAWLC LLSYFAFPIQ LLIASTFLGA LCGNYTTLLG 151 200 ENSP00000370192/1-463 ACFAYIVDQC KEHKQKTIRI AIIDFLLGLV TGLTGLSSGY FIRELGFEWS ENSBTAP00000011448/1-458 ASFAYIVDQC KEKKQRTIRI AIIDFLFGVV SGLTGLSSGY FIRGLGFVWS bmy_09555T0/1-410 ASFAYIVDQC KEKKQRTIRI AIIDFLLGIV TGLTGLSSGY FIRELGFVWS ENSTTRP00000012261/1-464 ASFAYIVDQC KEKKQRTIRI AVIDFLLGIV TGLTGLSSGY FIRELGFVWS BACU000119/1-446 ASFAYIVDQC KEKKQRTIRI AIIDFLLGIV TGLTGLSSGY FIRELGFVWS 201 250 ENSP00000370192/1-463 FLIIAVSLAV NLIYILFFLG DPVKECSSQN VTMSCSEGFK NLFYRTYMLF ENSBTAP00000011448/1-458 FLIVTVALFV NLIYILLFLE DSMKESSSQN ISVSWTETFK ----KTYMLF bmy_09555T0/1-410 FSIATMALTV NLIYILFFLE DSVKEPSSQN VSISWTEGFK NLFYRTYMLF ENSTTRP00000012261/1-464 FLIATMALTV NLIYILFFLE DSMKEPSSQN VSVSWTEGFK NLFYRTYMLF BACU000119/1-446 FSIATMALTV NLIYILFFLE DSVKEPSSQN VSVSWTEGFK NLFYQTYMLF 251 300 ENSP00000370192/1-463 KNASGKRRFL LCLLLFTVIT YFFVVIGIAP IFILYELDSP LCWNEVFIGY ENSBTAP00000011448/1-458 KNASGEQRSL CCLLLFTMIT YFFVTIGVSP IFVLYELDSP LCWDEVLIGY bmy_09555T0/1-410 KNNSGEQRSL LCLLLFTMIT YFFVTIGISP IFILYELDSP LCWDEVLIGY ENSTTRP00000012261/1-464 KNNSGEQRSL LCLLLFTMIT YFFVTAGISP IFILYELDSP LCWDEVLIGY BACU000119/1-446 KNNSGEQRSL LCLLLFTMIT YFFVTIGISP IFILYELDSP LCWDEVLIGY 301 350 ENSP00000370192/1-463 GSALGSASFL TSFLGIWLFS YCMEDIHMAF IGIFTTMTGM AMTAFASTTL ENSBTAP00000011448/1-458 GSALGSVTFF SSFLGIWLFS YCMEDIHMAF IGTFTTMVGM AMTAFARTTL bmy_09555T0/1-410 GSALGSVSFF SSFLGIWLFS YCMDDIHMAF IGIFTTMVGM AMTAFARTTL ENSTTRP00000012261/1-464 GSALGSVSFF SSFLGIWLFS YCMEDIHMAF IGIFTTMVGM AMTAFARTTL BACU000119/1-446 GSALGSVSFF SSFLGIWLFS YCMDDIHMAF IGIFTTMVGM AMTAFARTTL 351 400 ENSP00000370192/1-463 MMFLARVPFL FTIVPFSVLR SMLSKVVRST EQGTLFACIA FLETLGGVTA ENSBTAP00000011448/1-458 MMFLVRLPFL FTVMPLSVLR SMISKVVHST EQGTMFACLA FLETLGGITA bmy_09555T0/1-410 MMFLVRLPFL FTVVPLSVLR SMISKVVRST EQ-------V LSSASAGMRE ENSTTRP00000012261/1-464 MMFLVRLPFL FTVVPFSVLR SMISKVVRST EQGTMFACLA FLETLGGITA BACU000119/1-446 MMLLVRLPFL FTVVPLSVLR SMISKVVRST EQGTMFACLA FLETLGGITA 401 450 ENSP00000370192/1-463 VSTFNGIYSA TVAWYPGFTF LLSAGLLLLP AISLCVVKCT SWNEGSYELL ENSBTAP00000011448/1-458 VSTFNGIYSA TVAWCKGFVF LLSAVLLLIP AISLCVIKYV SRNTGSYVLL bmy_09555T0/1-410 AMSF--LYKK N--------- ---------P AKTL------ ---------- ENSTTRP00000012261/1-464 VSTFNGIYSA TVAWYKGFVF LLSAVLLLIP AISLCAVKCI SRNAGSYVLL BACU000119/1-446 VSTFNGIYSA TVAWYKGFVF LLSAVLLLIP AISL------ -WYVITFYPF 451 500 ENSP00000370192/1-463 IQEESSEDAS DRAC- ENSBTAP00000011448/1-458 IQEESSEDTS DR--- bmy_09555T0/1-410 ----QTDD-- ----- ENSTTRP00000012261/1-464 IQEESSEDTS DRAHQ BACU000119/1-446 IKG------- -----