KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:44 2014 Check: 00 .. Name: ENSP00000324318/1-735 Len: 818 Check: 6267 Weight: 1.00 Name: ENSBTAP00000011449/1-789 Len: 818 Check: 3374 Weight: 1.00 Name: ENSTTRP00000005616/1-732 Len: 818 Check: 327 Weight: 1.00 Name: bmy_14880T0/1-532 Len: 818 Check: 6359 Weight: 1.00 Name: BACU016815/1-810 Len: 818 Check: 6523 Weight: 1.00 // 1 50 ENSP00000324318/1-735 ---------- ---------- MEDAGGGEE- -------TPA PEAPHPPQLA ENSBTAP00000011449/1-789 ---------- ---------- MENAEGASQH VPEQSAPAQG PAQSIAPQG- ENSTTRP00000005616/1-732 ---------- ---------- MESARGAEQ- -----GPAEG PAQSMAPQG- bmy_14880T0/1-532 ---------- ---------- MESAEGAEQH APERSGPAEG PAQSTGPQG- BACU016815/1-810 MVTKLEADEA DVCLSLSQVP MESAEGAKQH APERSGPAAG PAQSTAPRG- 51 100 ENSP00000324318/1-735 PPEEQG-LLF QEETIDLGGD EFGSEENETA SEGSSPLADK LNEHMMESVL ENSBTAP00000011449/1-789 PQGDQGQLLY HEETIDLGGD EFESED---- ---SNNFADK LDEPLMESVL ENSTTRP00000005616/1-732 PQEDQRQLLY HEETIDLGGD EFGSED---- ---SNNLVDK LDEPMMESVL bmy_14880T0/1-532 PREDQGQPLY HEETIDLGGD GFGSED---- ---SNNLVDK LDEPMMESVL BACU016815/1-810 PREDQGRPLY HEETIDLGGD GFGSED---- ---SNNLVDK LDEPMMESVL 101 150 ENSP00000324318/1-735 ISDSP-NSEG DAGDLGRVRD EAEPG-GEGD PGPEPA---- --GTPSPSGE ENSBTAP00000011449/1-789 ISDSPNNSED DAGDLGCLQD VGDPAEGSGD HRLGPSAEEG ALGSLSDGGE ENSTTRP00000005616/1-732 ISDSPNNSED GAGDLGCLQD VVETAEGGSD QKR------- --DALSDDGE bmy_14880T0/1-532 ISDSPNNSDD GAGDLGCLQD VVETAEGGAD HRRESVVDEE ALDALSDDGE BACU016815/1-810 ISDSPNNSDD GAGDLGCLQD VVETAEGGAD HRRESVVDEE ALGALSDDGE 151 200 ENSP00000324318/1-735 ADGDCAPEDA A---PSSGGA PRQDAARE-- ---------- ---------- ENSBTAP00000011449/1-789 SDGGDTPQDV SDMTPDGRAS LKEDPERSDV EDLPAFEHGG GEDPGPGAAR ENSTTRP00000005616/1-732 SEGEDTPKDV SDMTPDSRAS LKEDPARE-- ---------- ---------- bmy_14880T0/1-532 SDGEDTPKDV SDMTSDSRAS LKEDPEQEEV KDLPTFEHEG AEDLGPGDAR BACU016815/1-810 SDGEDTPKDV ADMTSDSRAS LKEDPEQEEV KDLPTCEHEG AEDLGPGDAR 201 250 ENSP00000324318/1-735 --VPGSEAAR PEQEP-PVAE PVPVCTIFSQ -----RAPPA SGDGFEPQMV ENSBTAP00000011449/1-789 VPMAGPPSGT PPRQPAPKDE PVPMCTIFSQ -PPPSAQPPA LRDGFESQMV ENSTTRP00000005616/1-732 ---GARSGAV SPRQPSPKDE PVPMCTIFSQ -----RRLPA PGDGFESQMV bmy_14880T0/1-532 APAAGPASGL SPRQPSPKDE PVPMCTIFSQ LPPAGSQPQV PRDGFESQMV BACU016815/1-810 APAAGPASGL SPRQPSPKDE PVPMCTIFSQ LPPAGSQPQV PRDGFESQMV 251 300 ENSP00000324318/1-735 KSPSFGGASE ASARTPPQVV QPSPSLSTFF GDTAASHSLA SDFFDSFTTS ENSBTAP00000011449/1-789 KSPSFSSASE AAPRTPPQVV QPSPSLSKFF GDPTGSSSLA SDFFDSFTTS ENSTTRP00000005616/1-732 KSPSFSGVSE AAARTPPQVV QPSPSLSKFF GDTTSTNSLA SDFFDSFTTS bmy_14880T0/1-532 KSPSFSGASE AAARTPPQVV QPSPSLSKFF GDTTSTNSLA SDFFDSFTTS BACU016815/1-810 KSPSFSGASE AAARTPPQVV QPSPSLSKFF GDTTSTSSLA SDFFDSFTTS 301 350 ENSP00000324318/1-735 AFISVSNPGA GSPAPASPPP LAVPG----T EGRPEPVAMR GPQAAAP--- ENSBTAP00000011449/1-789 TFISVSNPNA SPSIPESLSS LAASPVGGSS PGSEETASSP GVQRSGSGVS ENSTTRP00000005616/1-732 TFISVSNPNA SPSIPESLSS LAAPS-GGRL PGF---LTLL TPQAGVS--- bmy_14880T0/1-532 TFISVSNPNA SPSIPESLSS LAATPVGENS LGSADPSYSP GTERSESGVS BACU016815/1-810 TFISVSNPNA SPSIPESLSS LAATPVGENS LGSADPSYSP GTERSESGVS 351 400 ENSP00000324318/1-735 ------PASP EPFAHIQAVF AGSDDPFATA LSMSEMDRRN DAWLPGEATR ENSBTAP00000011449/1-789 TVPLEISQSP KPFSQIQAVF AGSEDPFATA LSMSEMDRRS DAWIPGDATR ENSTTRP00000005616/1-732 ------TASP KPFSQIQAVF AGSEDPFATA LSMSEMDRRN DAWIPGEATR bmy_14880T0/1-532 TASLEIPQSP KPFSQIQAVF AGSEDPFATA LSMSEMDRRN DAWLPGEATR BACU016815/1-810 TASLEIPQSP KPFSQIQAVF AGSEDPFATA LSMSEMDRRN DAWLPGEATR 401 450 ENSP00000324318/1-735 GVLRAVATQQ RGAVFVDKEN LTMPGLRFDN IQGDAVKDLM LRFLGEKAAA ENSBTAP00000011449/1-789 NVLTSVATQQ YGTVFVDKED LTMPGLKFDN IQGDAVKDLM LRFLGEKAAA ENSTTRP00000005616/1-732 SVLISVTTQQ CSTVFVGKED LTMPGLKFDN IQGDAVKDLM LRFLGEKAAA bmy_14880T0/1-532 NVLISVTTQQ YSTVFVDKEG LTMPGLKFDN IQGDAVKDLM LRFLGEKAAA BACU016815/1-810 NVLISVTTQQ YSTVFVDKEG LTMPGLKFDN IQGDAVKDLM LRFLGEKAAA 451 500 ENSP00000324318/1-735 KRQVLNADSV EQSFVGLKQL ISCRNWRAAV DLCGRLLTAH GQGYGKSGLL ENSBTAP00000011449/1-789 KRQVLTASSV EQSFVGLKQL ISCKNWRAAV DLCGRLLTAH GQGYGKSGLP ENSTTRP00000005616/1-732 KRQVLNANSV EQSFVGLKQL ISCKNWRAAV DLCGRLLTAH GQGYGKSGLP bmy_14880T0/1-532 KRQVLNANSV EQSFVGLKQL ISCKNWRAAV DLCGRLLTAH GQGYGKSGLP BACU016815/1-810 KRQVLNANSV EQSFVGLKQL ISCKNWRAAV DLCGRLLTAH GQGYGKSGLP 501 550 ENSP00000324318/1-735 TSHTTDSLQL WFVRLALLVK LGLFQNAEME FEPFGNLDQP DLYYEYYPHV ENSBTAP00000011449/1-789 TSHTADSLQL WFVRLALLVK LGLFQNAEME FEPFGNLDQP DLYYEYYPHV ENSTTRP00000005616/1-732 TSHTADSLQL WFVRLALLVK LGLFQNAEME FEPFGNLDQP DLYYEYYPHV bmy_14880T0/1-532 TSHTADSLQL WFVRLALLVK LGLFQNAEME FEPFGNLDQP DLYYEYYPHV BACU016815/1-810 TSHTADSLQL WFVRLALLVK LGLFQNAEME FEPFGNLDQP DLYYEYYPHV 551 600 ENSP00000324318/1-735 YPGRRGSMVP FSMRILHAEL QQYLGNPQES LDRLHKVKTV CSKILANLEQ ENSBTAP00000011449/1-789 YPGRRGSMVP FSMRILHAEL QQYLGNPQES LDRLHRVKAV CSKILANLEQ ENSTTRP00000005616/1-732 YPGRRGSMVP FSMRILHAEL QQYLGNPQES LDRLHRVKAV CSKILTNLEQ bmy_14880T0/1-532 YPGRRGKA-- ---------- ---------- ---------- ---------- BACU016815/1-810 YPGRRGSMVP FSMRILHAEL QQYLGNPQES LDRLHRVKAV CSKILTNLEQ 601 650 ENSP00000324318/1-735 GLAEDGGMSS VTQEGRQASI RLWRSRLGRV MYSMANCLLL MKDYVLAVEA ENSBTAP00000011449/1-789 GLAEDGTTSS IAQENRQASV QLWRSRLGRV TCSMANCLLL MKDYVLAVDA ENSTTRP00000005616/1-732 GLAEDGSMNS MAPENRQXXX XXXXXXXXXX XXXXXXXXXX XXDYVLAVDA bmy_14880T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU016815/1-810 GLAEDGSINC TAQENRQASV QLWRSRLGRV TCSMANCLLL MKDYVLAVDA 651 700 ENSP00000324318/1-735 YHSVIKYYPE QEPQLLSGIG RISLQIGDIK TAEKYFQDVE KVTQKLDGLQ ENSBTAP00000011449/1-789 YRAVVQFHPE QEPQVLSCIG RIFLQIGDIK AAEKYFQDVE KVTQKLDGLQ ENSTTRP00000005616/1-732 YRSVVQYYPH QEPQLLSCIG RIFLQIGDIK TAEKYFQDVE KVTQKLDGLQ bmy_14880T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU016815/1-810 YRSVVQYFPE QEPQLLSCIG RIFLQIGDIK TAEKYFQDVE KVTQKLEGLQ 701 750 ENSP00000324318/1-735 GKIMVLMNSA FLHLGQNNFA EAHRFFTEIL RMDPRNAVAN NNAAVCLLYL ENSBTAP00000011449/1-789 GKTMVLMNRA FLHLGQNNFA EAHRFFTEIL RVDPSNAVAN NNAAVCLLYL ENSTTRP00000005616/1-732 GKIMVLMNRA FLHLGQNNFA EAHRCFTEIL RIDPANAVAN NNAAVCLLYL bmy_14880T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU016815/1-810 GKIMVLMNRA FLHLGQNNFA DAHRCFTEIL KIDPANAVAN NNAAVCLLYL 751 800 ENSP00000324318/1-735 GKLKDSLRQL EAMVQQDPRH YLHESVLFNL TTMYELESSR SMQKKQALLE ENSBTAP00000011449/1-789 GRLKDSLRQL EAMAQRDPRQ HLHESVLFNL TTMYELESSR SLQKKQALLE ENSTTRP00000005616/1-732 GRLKDSLRQL EAMTQQDPRH CLHESALFNL TTMYELESSR SLQKKQALLE bmy_14880T0/1-532 ---------- ---------- ---------- ---------- ---------- BACU016815/1-810 GRLKDSLRQL EAMTQQDPRH CLHESALFNL TTMYELESSR SLQKKQALLE 801 850 ENSP00000324318/1-735 AVAGKEGDSF NTQCLKLA ENSBTAP00000011449/1-789 AVASTEGDCF NTHCLKLA ENSTTRP00000005616/1-732 AVASKEGDCF NTQCLKLA bmy_14880T0/1-532 ------GG-- -------- BACU016815/1-810 AVASKEGDCF NTQCLKLA