KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:47 2014 Check: 00 .. Name: bmy_05188T0/1-505 Len: 645 Check: 3544 Weight: 1.00 Name: ENSP00000256925/1-633 Len: 645 Check: 3316 Weight: 1.00 Name: ENSBTAP00000011471/1-418 Len: 645 Check: 6096 Weight: 1.00 Name: BACU017861/1-306 Len: 645 Check: 8172 Weight: 1.00 Name: ENSTTRP00000008333/1-351 Len: 645 Check: 574 Weight: 1.00 // 1 50 bmy_05188T0/1-505 ---MSQNSSQ CDNCSYCIWQ TSQNYCSLEQ PGQ------- ---------- ENSP00000256925/1-633 MAAAAAAATT AACSSGSAGT DAAGASGLQQ PPPQPQPQPA AAAPAQPPPE ENSBTAP00000011471/1-418 ---------- ---------- -----TGVQP QPP------- ---------- BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_05188T0/1-505 ---------- ---------- ---------- ---------- ---------- ENSP00000256925/1-633 PPRKPRMDPR RRQAALSFLT NISLDGRLPP QDAEWGGGEE GGAAKPGAGG ENSBTAP00000011471/1-418 ---------- ---------- ---------- ---------- ---------- BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_05188T0/1-505 ---------- ---------- ---------- ---------- ---------- ENSP00000256925/1-633 ACGARTRFSL LAAAERGGCI ALAAPGTPAA GLAAGSGPCL PQPSSLPPLI ENSBTAP00000011471/1-418 ---------- ---------- ---------- ---------- ---------- BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_05188T0/1-505 ---------- ---------- GGSTSAFEQL QRSRTPVLAC DLWRLGSSVE ENSP00000256925/1-633 PGGHATVSGP GVARGFASPL GAGRASGEQW QPPRPAPLAA CAQLQLLDGS ENSBTAP00000011471/1-418 ---------- ---------- ---------- ---------- -------DGP BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_05188T0/1-505 RERVVQKSPK PGVRIGVHSL GQCNARCTVC GAVDGCAALC CHVRCRVMPL ENSP00000256925/1-633 GAAGQEELEE DDAFISVQVP AAAFLGSGTP GSGSGSRGRL NSFTQGILPI ENSBTAP00000011471/1-418 GDAGPEELEE DDAFTGVHVP AAAFLSSGTP GGGSGSRGRL NSFTQGILPI BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_05188T0/1-505 WPVHLSSEPF QEGPRTHLLS DTIKTEGPTC VGERRRLISQ RSSLETLEDI ENSP00000256925/1-633 AFSRPTSQNY CSLEQPGQGG STSAFEQLQ- -RSRRRLISQ RSSLETLEDI ENSBTAP00000011471/1-418 AFSRQTSQNY CSLEQAGPGS GSSAFEQLQ- -RSRRRLISQ RSSLETLEDI BACU017861/1-306 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008333/1-351 ---------- ---------- ---------- ----RRLISQ RSSLETLEDI 301 350 bmy_05188T0/1-505 EENAPLRRRI LFKMTGTNNV FGIRGSVLWS VNILPDLRLK SDLALSLMIF ENSP00000256925/1-633 EENAPLRRCR TLSGSPRPKN FK-------K IHFIKNMRQH DTRNGRIVLI ENSBTAP00000011471/1-418 EENAPLRRCR TLSGSPRPKN FK-------K IHFIKNMRQH DTRNGR---- BACU017861/1-306 ---------- ---------- ---------- ------MRQH DTRNGRIVLI ENSTTRP00000008333/1-351 EENAPLRRCR TLSGSPRPKN FK-------K IHFIKNMRQH DTRNGRIVLI 351 400 bmy_05188T0/1-505 IKRGESRLCQ QILPGCRFRF LGLLTDLKLD GGRQSAGAVS LKEIIGLEGV ENSP00000256925/1-633 SGRRSFCSIF SVLP---YRD STQVGDLKLD GGRQSTGAVS LKEIIGLEGV ENSBTAP00000011471/1-418 ---------- ---------- -----DLKLD GGRQSAGAVS LKEIIGLEGV BACU017861/1-306 SGRRSFCSIF SVLP---YRD SAQVGDLKLD GGRQSAGAVS LKEIIGLEGV ENSTTRP00000008333/1-351 SGRRSFCSIF SVLP---YRD SAQVGDLKLD GGRQSAGAVS LKEIIGLEGV 401 450 bmy_05188T0/1-505 ELGADGKTVS YTQFLLPTNA FGARRNTLDS MSSFSQLRTL SHRSLSIGRA ENSP00000256925/1-633 ELGADGKTVS YTQFLLPTNA FGARRNTIDS TSSFSQFRNL SHRSLSIGRA ENSBTAP00000011471/1-418 ELGADGKTVS YTQFLLPTNA FGTRRNTLDS TSSFSQLRTL SHRSLSIGRA BACU017861/1-306 ELGADGKTVS YTQFLLPTNA FGARRNTLDS MSSFSQLRTL SHRSLSIGRA ENSTTRP00000008333/1-351 ELGADGKTVS YTQFLLPTNA FGARRNTLDS MSAFSQLRTL SHRSLSIGRA 451 500 bmy_05188T0/1-505 SSAQGSLDTG SEPGEFMDYD PNLLDDPQWP CGKHKRVLIF PSYMTTVIDY ENSP00000256925/1-633 SGTQGSLDTG SDLGDFMDYD PNLLDDPQWP CGKHKRVLIF PSYMTTVIDY ENSBTAP00000011471/1-418 SSTQGSLDTG SDLGDFMDYD PNLLDDPQWP CGKHKRVLIF PSYMTTVIDY BACU017861/1-306 SSAQGSLDTG SDPGEFMDYD PNLLDDPQWP CGKHKRVLIF PSYMTTVIDY ENSTTRP00000008333/1-351 SSTQGSLDAG SDLGEFMDYD PNLLDDPQWP CGKHKRVLIF PSYMTTVIDY 501 550 bmy_05188T0/1-505 VKPSDLKKDM NETFKEKFPH IKLTLSKIRS LKREMRKLAQ EDCGLEEPTV ENSP00000256925/1-633 VKPSDLKKDM NETFKEKFPH IKLTLSKIRS LKREMRKLAQ EDCGLEEPTV ENSBTAP00000011471/1-418 VKPSDLKKDM NETFKEKFPH IKLTLSKIRS LKREMRKLAQ EDCGLEEPTV BACU017861/1-306 VKPSDLKKDM NETFKEKFPH IKLTLSKIRS LKREMRKLAQ EDCGLEEPTV ENSTTRP00000008333/1-351 VKPSDLKKDM NETFKEKFPH IKLTLSKIRS LKREMRKLAQ EDCGLEEPTV 551 600 bmy_05188T0/1-505 AMAFVYFEKL ALKGKLNKHN RKLCAGACXL LAAKIGSDLK KHEVKHLIDK ENSP00000256925/1-633 AMAFVYFEKL ALKGKLNKQN RKLCAGACVL LAAKIGSDLK KHEVKHLIDK ENSBTAP00000011471/1-418 AMAFVYFEKL ALKGKLNKQN RKLCAGACVL LAAKIGSDLK KHEVKHLIDK BACU017861/1-306 AMAFVYFEKL ALKGKLNKHN RKLCAGACVL LAAKIGSDLK KHEVKHLIDK ENSTTRP00000008333/1-351 AMAFVYFEKL ALKGKLNKHN RKLCAGACVL LAAKIGSDLK KHEVKHLIDK 601 650 bmy_05188T0/1-505 LEEKFRLNRR ELIAFEFPVL VALEFALHLP EHEVMPHYRR LVQSS ENSP00000256925/1-633 LEEKFRLNRR ELIAFEFPVL VALEFALHLP EHEVMPHYRR LVQSS ENSBTAP00000011471/1-418 LEEKFRLNRR ELIAFEFPVL VALEFALHLP EHEVMPHYRR LVQSS BACU017861/1-306 LEEKFRLNRR ELIAFEFPVL VALEFALHLP EHEVMPHYRR LVQSS ENSTTRP00000008333/1-351 LEEKFRLNRR ELIAFEFPVL VALEFALHLP EHEVMPHYRR LVQSS