KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:43:47 2014 Check: 00 .. Name: bmy_11183T0/1-561 Len: 561 Check: 7985 Weight: 1.00 Name: ENSTTRP00000005738/1-508 Len: 561 Check: 7536 Weight: 1.00 Name: ENSP00000315386/1-507 Len: 561 Check: 9943 Weight: 1.00 Name: ENSBTAP00000011476/1-517 Len: 561 Check: 1118 Weight: 1.00 // 1 50 bmy_11183T0/1-561 WPRGPPRLRS ARRGAWCGGP GCGRASFCPS AISTCRPSTR RAKTSLARPQ ENSTTRP00000005738/1-508 ----MRRL-- ---------- ---------- ------PLVP LLPLQLALLV ENSP00000315386/1-507 ----MRRL-- ---------- ---------- ------PRAL LLQLRLALLV ENSBTAP00000011476/1-517 LGAAMRRL-- ---------- ---------- ------PRAR LLALQLALLV 51 100 bmy_11183T0/1-561 ARGSCNKRLL NEKMNSEGPS LVNMQGLVFR MDGARGVNEC SLLRIRSALS ENSTTRP00000005738/1-508 AAGAPEAPVS ALQSLVWGPG LRAGVVLPVR YFYLQAVNSE GQNLTRS--P ENSP00000315386/1-507 AAGAPEVLVS APRSLVWGPG LQAAVVLPVR YFYLQAVNSE GQNLTRS--P ENSBTAP00000011476/1-517 ASGAPEAPLS AQRSLVWGPG LQAGVVLPVR YFYLQAVSPE GQNLTRS--P 101 150 bmy_11183T0/1-561 AGQTLFKVVI KSLSPKELVR IHVPKPLDRN DGTFLMRYRM YETVSEGLKI ENSTTRP00000005738/1-508 PGQTLFKVVI KSLSPKELVR IHIPKPLDRN DGTFLMRYRM YETVSEGLKI ENSP00000315386/1-507 AGETPFKVVV KSLSPKELVR IHVPKPLDRN DGTFLMRYRM YETVDEGLKI ENSBTAP00000011476/1-517 PGQTLFRVVI KSLSPKELVR IHVPKPLDRN DGTFLMRYRM YETVSKGLKI 151 200 bmy_11183T0/1-561 EVLYGDEHVA QSPYILKGPV YHEYCECPEE DPQAWQKTLS CPAKEPQIAK ENSTTRP00000005738/1-508 EVLYGDEHVA QSPYILKGPV YHEYCECPEE DPQAWQKTLS CPAKEPQIAK ENSP00000315386/1-507 EVLYGDEHVA QSPYILKGPV YHEYCECP-E DPQAWQKTLS CPTKEPQIAK ENSBTAP00000011476/1-517 EVLYGDEHVA QSPYILKGPV YHEYCECPEE DPQAWQKTLS CPDKEPQIEK 201 250 bmy_11183T0/1-561 DFASFPSINL QQMLNEVPKR FGDERGAIVH YTILTNLIYR RSLGKYTDFK ENSTTRP00000005738/1-508 DFSSFPSINL QQMLNEVPKR FGDERGAIVH YTILSNLIYR RSLGKYTDFK ENSP00000315386/1-507 DFASFPSINL QQMLKEVPKR FGDERGAIVH YTILNNHVYR RSLGKYTDFK ENSBTAP00000011476/1-517 DFASFPSINL QQMLIEVPKR FGDERGAIVH YTILNNNIYR RSLGKYTDFK 251 300 bmy_11183T0/1-561 MFSDEILLSL ARKVLCPVTE RRSTINLEFY VNLGDWPLEH RKVNETPGPL ENSTTRP00000005738/1-508 MFSDEILLSL ARKVLLP--- -----DLEFY VNLGDWPLEH RKVNETPGPL ENSP00000315386/1-507 MFSDEILLSL TRKVLLP--- -----DLEFY VNLGDWPLEH RKVNGTPSPI ENSBTAP00000011476/1-517 MFSDEILLSL ARKVLLP--- -----DLEFY VNLGDWPLEH RKVNETPGPL 301 350 bmy_11183T0/1-561 PIISWCGSLD SRDVILPTYD ITHSTLEAMR GVTNDLLSIQ GNTAQKTEET ENSTTRP00000005738/1-508 PIISWCGSLD SRDVILPTYD ITHSTLEAMR GVTNDLLSIQ GNT------- ENSP00000315386/1-507 PIISWCGSLD SRDVVLPTYD ITHSMLEAMR GVTNDLLSIQ GNT------- ENSBTAP00000011476/1-517 PIISWCGSLD SQDVILPTYD ITHSTLEALR GVTNDLLSIQ GNTGLKH--- 351 400 bmy_11183T0/1-561 NALMRPSWIN KTEKAFFRGR DSREERLQLV QLSKDNPQLL DAGITGYFFF ENSTTRP00000005738/1-508 ----GPSWIN KTEKAFFRGR DSREERLQLV QLSKDNPQLL DAGITGYFFF ENSP00000315386/1-507 ----GPSWIN KTERAFFRGR DSREERLQLV QLSKENPQLL DAGITGYFFF ENSBTAP00000011476/1-517 ---LGPSWIN KTEKAFFRGR DSREERLQLV QLSKENPQLL DAGITGYFFF 401 450 bmy_11183T0/1-561 QEKEKELGKA KLIGFFDFFK YKYQVNVDGT VAAYRYPYLM LGDSLVLKQD ENSTTRP00000005738/1-508 QEKEKELGKA KLIGFFDFFK YKYQVNVDGT VAAYRYPYLM LGDSLVLKQD ENSP00000315386/1-507 QEKEKELGKA KLMGFFDFFK YKYQVNVDGT VAAYRYPYLM LGDSLVLKQD ENSBTAP00000011476/1-517 QEKEKELGKA KLIGFFDFFK YKYQVNVDGT VAAYRYPYLM LGDSLVLKQD 451 500 bmy_11183T0/1-561 SPYYEHFYMA LKPWKHYVPI KRNLSDLLEK VEWAKENDEE AKKIAKEGQL ENSTTRP00000005738/1-508 SPYYEHFYMA LKPWKHYVPI KRNLSDLLEK VEWAKXXXXX XXXXXXXXXX ENSP00000315386/1-507 SPYYEHFYMA LEPWKHYVPI KRNLSDLLEK VKWAKENDEE AKKIAKEGQL ENSBTAP00000011476/1-517 SPYYEHFYMA LKPWKHYIPI KRNLSDLLEK VEWAKENDEE AKKIAKEGQL 501 550 bmy_11183T0/1-561 TARDLLQPHR LYCYYYRVLQ KYAERQTSKP EIRDGMELVP QPDDSASICQ ENSTTRP00000005738/1-508 XXXXXXXXXX XXXXXXXXXX KYAERQTSKP EIRDGMELVP QPDDSASICQ ENSP00000315386/1-507 MARDLLQPHR LYCYYYQVLQ KYAERQSSKP EVRDGMELVP QPEDSTAICQ ENSBTAP00000011476/1-517 TARDLLQPHR LYCYYYTVLQ KYAERQLSKP EVRDGMELVP QPGDSASLCQ 551 600 bmy_11183T0/1-561 CHRKRPLREE L ENSTTRP00000005738/1-508 CHRKRPLREE L ENSP00000315386/1-507 CHRKKPSREE L ENSBTAP00000011476/1-517 CHRKRPLRQE L