KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:48 2014 Check: 00 .. Name: BACU012755/1-287 Len: 996 Check: 3522 Weight: 1.00 Name: ENSP00000402460/1-955 Len: 996 Check: 8834 Weight: 1.00 Name: ENSBTAP00000011480/1-891 Len: 996 Check: 8866 Weight: 1.00 Name: bmy_21597T0/1-456 Len: 996 Check: 8414 Weight: 1.00 Name: ENSTTRP00000002373/1-910 Len: 996 Check: 1295 Weight: 1.00 // 1 50 BACU012755/1-287 ---------- ---------- ---------- -----MPSGE SGKDVTAYPV ENSP00000402460/1-955 MLPGRLCWVP LLLALGVGSG SGGGGDSRQR RLLAAKVNKH KPWIETSYHG ENSBTAP00000011480/1-891 ---------- ---------- ---------- ---------- ---------- bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 ---------- ---------- ---------- -------NKH KPWIETSYHG 51 100 BACU012755/1-287 QKKPATGMQS LANDIQGNKD VKAVTDKWEI CAFKIHGQEL PFEAVVLNKT ENSP00000402460/1-955 VITENNDTVI LDPPLVALDK DAPVPFAGEI CAFKIHGQEL PFEAVVLNKT ENSBTAP00000011480/1-891 ---------- ---------- ----PPAGEI CAFKIHGQEL PFEAVVLNKT bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 VI-ENNDTVI LDPPLVALDK DAPVPFAGEI CAFKIHGQEL PFEAVVLNKT 101 150 BACU012755/1-287 SGEGRLRARS PIDCELQKEY TFIIQAYDCG TGPQETAWKK SHKAVVHIQV ENSP00000402460/1-955 SGEGRLRAKS PIDCELQKEY TFIIQAYDCG AGPHETAWKK SHKAVVHIQV ENSBTAP00000011480/1-891 SGEGRLRAKS PIDCELQKEY TFIIQAYDCG TGPRETAWKK SHKAVVHIQV bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 SGEGRLRARS PIDCELQKEY TFIIQAYDCG TGPQETAWKK SHKAVVHIQV 151 200 BACU012755/1-287 KDVNEFAPTF KEPAYKAVVT EGKIYDSILQ VEAVDEDCSP QYSQICNYEI ENSP00000402460/1-955 KDVNEFAPTF KEPAYKAVVT EGKIYDSILQ VEAIDEDCSP QYSQICNYEI ENSBTAP00000011480/1-891 KDVNEFAPTF KEPAYKAIVT EGKIYDSILQ VEAIDEDCSP QYSQICNYEI bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 KDVNEFAPTF KEPAYKAVVT EGKIYDSILQ VEAVDEDCSP QYSQICNYEI 201 250 BACU012755/1-287 VTTDVPFAID RNGNVRNTEK LSYDKQRQYE ILVTAYDCGQ KPAAQDTLVQ ENSP00000402460/1-955 VTTDVPFAID RNGNIRNTEK LSYDKQHQYE ILVTAYDCGQ KPAAQDTLVQ ENSBTAP00000011480/1-891 VTTDVPFAID RNGNVRNTEK LSYDKQHQYE ILVTAYDCGQ KPAAQDTLVQ bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 VTTDVPFAID RNGNVRNTEK LSYDKQRQYE ILVTAYDCGQ KPAAQDTLVQ 251 300 BACU012755/1-287 VDVKPVCKPG ---------- ---------- ---------- ---------- ENSP00000402460/1-955 VDVKPVCKPG WQDWTKRIEY QPGSGSMPLF PSIHLETCDG AVSSLQIVTE ENSBTAP00000011480/1-891 VDVKPVCKPG WQDWTKRIEY QPGSGSVPLF PSIHLETCDG AVSSIQITTE bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 VDVKPVCKPG WQDWTKRIEY QPGSGSVPLF PSIHLETCDG AVSSIQITTE 301 350 BACU012755/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 LQTNYIGKGC DRETYSEKSL QKLCGASSGI IDLLPSPSAA TNWTAGLLVD ENSBTAP00000011480/1-891 LQTNYIGKGC DRETYSEKSL QKLCGASSGI IDLLPSPSAA TNWTIGLLVD bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 LQTNYIGKGC DRETYSEKSL QKLCGASSGI IDLLPSPSAA TNWTAGLLVD 351 400 BACU012755/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 SSEMIFKFDG RQGAKVPDGI VPKNLTDQFT ITMWMKHGPS PGVRAEKETI ENSBTAP00000011480/1-891 SSEMIFKFDG RQGAKIPDGV VPKNLTDQFT ITMWMKHGPS PGVRAEKETI bmy_21597T0/1-456 ---------- ---------- ---------- ----MGHGSG GGVQGE---- ENSTTRP00000002373/1-910 SSEMIFKFDG RQGAKIPDGV VPKNLTDQFT ITMWMKHGPS PGVRAEKETI 401 450 BACU012755/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 LCNSDKTEMN RHHYALYVHN CRLVFLLRKD FDQADTFRPA EFHWKLDQIC ENSBTAP00000011480/1-891 LCNSDKTEMN RHHYALYVHN CRLVFLLRKD FDQADTFRPA EFHWKLDQIC bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 LCNSDKTEMN RHHYALYVHN CRLVFLLRKD FDQADTFRPA EFHWKLDQIC 451 500 BACU012755/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 DKEWHYYVIN VEFPVVTLYM DGATYEPYLV TNDWPIHPSH IAMQLTVGAC ENSBTAP00000011480/1-891 DKEWHYYVIN VEFPVVTLYM DGATYEPYLV TNDWPIHPSH IAMQLTVGAC bmy_21597T0/1-456 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 DKEWHYYVIN VEFPVVTLYM DGATYEPYLV TNDWPIHPSH IAMQLTVGAC 501 550 BACU012755/1-287 WQGMLLTR-- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 WQGGEVTKPQ FAQFFHGSLA SLTIRPGKME SQKVISCLQA CKEGLDINSL ENSBTAP00000011480/1-891 WQGGEVTKPR FAQFFHGSLA SLTIRPGKMD SQKVISCLQA CKEGLDINSL bmy_21597T0/1-456 W--GSSSRPK SRQ------- ---------- ---------- ---------- ENSTTRP00000002373/1-910 WQGGEVTKPR FAQFFHGSLS SLXXXXXXXX XXXXXXXXXX XXXXXXXXXX 551 600 BACU012755/1-287 ---------- ---------- --------HP AILDLKFPHQ ISFPDSSPRK ENSP00000402460/1-955 ESLGQGIKYH FNPSQSILVM EGDDIGNINR ALQKVSYINS RQFPTAGVRR ENSBTAP00000011480/1-891 ESLGQGIKYH FNPSQSVLVM EGDDIGNINR ALQKVSYINS RQFPTAGVRR bmy_21597T0/1-456 -QKEQKPQYH FNPSQSVLVM EGDDIGNINR ALQKVSYINS RQFPTAGVRR ENSTTRP00000002373/1-910 XXXXXXXXYH FNPSQSVLVM EGDDIGNINR ALQKVSYINS RQFPTVGVRR 601 650 BACU012755/1-287 I--------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 LKVSSKVQCF GEDVCISIPE VDAYVMVLQA IEPRITLRGT DHFWRPAAQF ENSBTAP00000011480/1-891 LKVSSKVQCF GEDVCISIPD IDAYVMVLQA VEPQITLHGT DRFWRPAAQF bmy_21597T0/1-456 LKVSSKVQCF GEDVCISLPD VDAYVMVLQA VEPQITLHGT DRFWRPTAQF ENSTTRP00000002373/1-910 LKVSSKVQCF GEDVCISLPD VDAYVMVLQA VEPQITLHGT DRFWRPTAQF 651 700 BACU012755/1-287 ---------- ---------- ---------- ---PSS---- ---------- ENSP00000402460/1-955 ESARGVTLFP DIKIVSTFAK TEAPGDVKT- -TDPKSEVLE EMLHNLDFCD ENSBTAP00000011480/1-891 ESARGVILFP DIKIVSTFTK AEAPSDLKTT GTAPKSAVLE EMLHNLDFCD bmy_21597T0/1-456 ESAKGVTLFP DIKIVSTFAK AEDPGDLKT- -TAPKSAVFE EMLHNLDFCD ENSTTRP00000002373/1-910 ESPRGVTLFP DIKIVSTFTK TEAPGDLKT- -TAPKSAVFE EMLHNLDFCD 701 750 BACU012755/1-287 ---------- ---------- ---------- -----FSYF- ---------- ENSP00000402460/1-955 ILVIGGDLDP RQECLELNHS ELHQRHLDAT NSTAGYSIY- ---------- ENSBTAP00000011480/1-891 ILVLGGDLDP RQECLELNHS ELHQRHLDAT NSTAGYSIY- ---------- bmy_21597T0/1-456 ILVLGGDLDP KQECLELNHS ELHQRHLDAT NSTAGYSIYG KAVLCPAPSG ENSTTRP00000002373/1-910 ILVLGGDLDP KQECLEINHS ELHQRHLDAT NSTAGYSIY- ---------- 751 800 BACU012755/1-287 ---------- ---------- ---------- ---------- ---------- ENSP00000402460/1-955 ---------- ---------- GVGSMSRYEQ VLHHIRYRNW RPASLEARRF ENSBTAP00000011480/1-891 ---------- ---------- GVGSMSRYEQ VLRHIRYRNW HPAALESRHF bmy_21597T0/1-456 PFSVACPGSH ECDGSSISCG GVGSMSRYEQ VLRHIRYRNW RPAALEARRF ENSTTRP00000002373/1-910 ---------- ---------- GVGSMSRYEQ VLRHIRYRNW RPAALEARRF 801 850 BACU012755/1-287 ---------- ---------- -------IPE ---------- -------HHP ENSP00000402460/1-955 RIKCSELNGR YTSNEFNLEV SILHEDQVSD KEHVNHLIVQ PPFLQSVHHP ENSBTAP00000011480/1-891 RIKCSELNGR YTSNEFNLEV SVLHEVRVPD SEHVNHLIAQ PPFLQSVHHP bmy_21597T0/1-456 RIKCSELNGR YTSNEFNLEV SVLHEVRVSD KEHVNHLIVQ PPFLQSVHHP ENSTTRP00000002373/1-910 RLKCSELNGR YSSNEFNLEV SVLHEVRVSD KEHVNHLIVQ PPFLQSVHHP 851 900 BACU012755/1-287 ---TAANYTS --PSI----- ---------- ---------- ---------- ENSP00000402460/1-955 ESRSSIQHSS VVPSIATVVI IISVCMLVFV VAMGVYRVRI AHQHFIQETE ENSBTAP00000011480/1-891 ESQTSIQHSS AVPSIATVVI IISVCMLVFV VAMGVYRVRI AHQHFIQETE bmy_21597T0/1-456 ESQTSIQRSS VVPSIATVVI IISVCMLVFV VAMGMYRVRI XHQHFTQESE ENSTTRP00000002373/1-910 ESQTGIQRSS -VPSIATVVI IISVCMLVFV VAMGMYRVRI AHQHFTQESE 901 950 BACU012755/1-287 ---------- ---------- ---------- ---------- -------SSP ENSP00000402460/1-955 AAKESEMDWD DSALTITVNP MEKHEGPGHG EDETEGEEEE EAEEEMSSSS ENSBTAP00000011480/1-891 AAKEAEMDWD DSALTITVNP MEKHGAPGRG EEETEEEEEE EAEEDSSSSS bmy_21597T0/1-456 AAKEAEMDWD DSALTITVNP MEKHGAPGRG EDETEEEEEE E--DLSSSSS ENSTTRP00000002373/1-910 AAKEAEMDWD DSALTITVNP MEKHGAPGRG EDETEEEEEE ---DLSSSSS 951 1000 BACU012755/1-287 NAAGS----- ---------- ---------- ---------- ------ ENSP00000402460/1-955 GSDDS-EEEE EEEGMGRGRH GQNGARQAQL ----EWDDST L-PY-- ENSBTAP00000011480/1-891 ESEGSEEEEE EEEGAGRGRH GQSGARKSPK PRIGPWPQQG LVPAKA bmy_21597T0/1-456 DSEGS-DEEE EEDGVGRGRH GQSGARQAQL ----EWDDST L-PY-- ENSTTRP00000002373/1-910 DSEGS----D EEYGVGRGGH GQGGAAQAQL ----EWDDST L-PY--