KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:49 2014 Check: 00 .. Name: ENSTTRP00000002166/1-671 Len: 806 Check: 9897 Weight: 1.00 Name: ENSP00000378217/1-676 Len: 806 Check: 8310 Weight: 1.00 Name: ENSBTAP00000011487/1-676 Len: 806 Check: 368 Weight: 1.00 Name: bmy_09140T0/1-685 Len: 806 Check: 9111 Weight: 1.00 Name: BACU005577/1-785 Len: 806 Check: 7215 Weight: 1.00 // 1 50 ENSTTRP00000002166/1-671 ---------- ---------- ---------- ---------- ---------- ENSP00000378217/1-676 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011487/1-676 ---------- ---------- ---------- ---------- ---------- bmy_09140T0/1-685 ---------- ---------- ---------- ---------- ---------- BACU005577/1-785 MGNSEKQGQE GGILVDRGLP GTGPGEGSGP TSGGGCVAVV AAGARTTDKG 51 100 ENSTTRP00000002166/1-671 ---------- ---------- -MAPFLRISF NSYELGSLQA ADEASQPFCA ENSP00000378217/1-676 ---------- ---------- -MAPFLRIAF NSYELGSLQA EDEANQPFCA ENSBTAP00000011487/1-676 ---------- ---------- -MAPFLRISF NSYELGSLKA ADEASQPFCA bmy_09140T0/1-685 ---------- ---------- ---------- ---------- ---------- BACU005577/1-785 EPGSPGPTPN TGRQGPAASP NMAPFLRISF NSYELGSLQA ADEASQPFCA 101 150 ENSTTRP00000002166/1-671 VRMKEALSTE RGKTLVQKKP TMYPEWKSSF DAHIYEGRVI QIVLMRAAEE ENSP00000378217/1-676 VKMKEALSTE RGKTLVQKKP TMYPEWKSTF DAHIYEGRVI QIVLMRAAEE ENSBTAP00000011487/1-676 VKMKEALSTD RGKTLVQKKP TMYPEWKSTF DAHIYEGRVI QIVLMRAAEE bmy_09140T0/1-685 ---------- ---------- -MYPEWKSSF DAHIYEGRVI QIVLMRAAEE BACU005577/1-785 VRMKEALSTE RGKTLVQKKP TMYPEWKSSF DAHIYEGRVI QIVLMRAAEE 151 200 ENSTTRP00000002166/1-671 PVSEVTVGVS VLAERCKKNN GKAEFWLDLQ PQAKVLMSVQ YFLEDIDCKQ ENSP00000378217/1-676 PVSEVTVGVS VLAERCKKNN GKAEFWLDLQ PQAKVLMSVQ YFLEDVDCKQ ENSBTAP00000011487/1-676 PMSEVTVGVS VLAERCKKNN GKAEFWLDLQ PQAKVLMSVQ YFLEDVDCKQ bmy_09140T0/1-685 PVSEVTVGVS VLAERCKKNN GKAEFWLDLQ PQAKVLMSVQ YFLEDIDCKQ BACU005577/1-785 PVSEVTVGVS VLAERCKKNN GKAEFWLDLQ PQAKVLMSVQ YFLEDIDCKQ 201 250 ENSTTRP00000002166/1-671 SMRGEDGAKF PTMNRRGAIK QAKIHYIKNH EFIATFFGQP TFCSVCRDFV ENSP00000378217/1-676 SMRSEDEAKF PTMNRRGAIK QAKIHYIKNH EFIATFFGQP TFCSVCKDFV ENSBTAP00000011487/1-676 SMRGEDEAKF PTMNRRGAIK QAKIHYIRHH EFIATFFGQP TFCSVCREFV bmy_09140T0/1-685 SMRGEGEAKF PTMNRRGAIK QAKIHYIKNH EFIATFFGQP TFCSVCRDFV BACU005577/1-785 SMRGEGEAKF PTMNRRGAIK QAKIHYIKNH EFIATFFGQP TFCSVCRDFV 251 300 ENSTTRP00000002166/1-671 WGLNKQGYKC RQCNAAIHKK CID-IIGRCT GTAANSRDTI FQKERFNIDM ENSP00000378217/1-676 WGLNKQGYKC RQCNAAIHKK CIDKIIGRCT GTAANSRDTI FQKERFNIDM ENSBTAP00000011487/1-676 WGLNKQGYKC RQCNAAIHKK CIDKIIGRCT GTAANSRDTI FQKERFNIDM bmy_09140T0/1-685 WGLNKQGYKC RQCNAAIHKK CIDKIIGRCT GTAANSRDTI FQKERFNIDM BACU005577/1-785 WGLNKQGYKC RQCKAATHKK CIDKIIGRCT GTAANSRDTI FQKERFNIDM 301 350 ENSTTRP00000002166/1-671 PHRFKVYNYM SPTFCDHCGS LLWGLVKQGL KCEDCGMNVH HKCQTKVANL ENSP00000378217/1-676 PHRFKVHNYM SPTFCDHCGS LLWGLVKQGL KCEDCGMNVH HKCREKVANL ENSBTAP00000011487/1-676 PHRFKVYNYM SPTFCDHCGS LLWGLVKQGL KCEDCGMNVH HKCQMKVANL bmy_09140T0/1-685 PHRFKVYNYM SPTFCDHCGS LLWGLVKQGL KCEDCGMNVH HKCQMKVANL BACU005577/1-785 PHRFKVYNYM SPTFCDHCGS LLWGLVKQGL KCEDCGMNVH HKCQMKVANL 351 400 ENSTTRP00000002166/1-671 CGINQKLLAE ALNQVTQRPA RRSDSETAET VGIYQNFEKK PGVSGDDVP- ENSP00000378217/1-676 CGINQKLLAE ALNQVTQRAS RRSDSASSEP VGIYQGFEKK TGVAGEDMQD ENSBTAP00000011487/1-676 CGINQKLLAE ALNQVSQRSV KK-ETETQDT VGIYQNFEKK PGVSGDDLTG bmy_09140T0/1-685 CGINQKLLAE ALNQVTQRPA RRSDSETAET VGIYQNFEKK PGVSXDDVPG BACU005577/1-785 CGINQKLLAE ALNQVTQRPA RRSDSETAET VGIYQNFEKK PGVSGDDVPG 401 450 ENSTTRP00000002166/1-671 ---------- ---------- ---------- ---------- ---------- ENSP00000378217/1-676 N--------- ---------- ---------- ---------- ---------- ENSBTAP00000011487/1-676 KE-------- ---------- ---------- ---------- ---------- bmy_09140T0/1-685 EALPIPSRKA PTPQHQHGTQ PLHTVECNRR GGTSVGRDPA GKDHPLDMRH BACU005577/1-785 EALPIPSRKA PTPQHQHGTQ PLHTVECNRR GGTSVGRDPA GEDHPLDMRH 451 500 ENSTTRP00000002166/1-671 ---------- NGTYGKIWES STKCSIDNFT FIKILGKGSF GKVLLAELKG ENSP00000378217/1-676 ---------- SGTYGKIWEG SSKCNINNFI FHKVLGKGSF GKVLLGELKG ENSBTAP00000011487/1-676 ---------- TGTYGKIWES STKCNIDNFT FIKVLGKGSF GKVLLAELKG bmy_09140T0/1-685 ESEAAVSRXG TGTYGKIWES STKCSIENFT FLKVLGKGSF GKVLLAELKG BACU005577/1-785 ESEAAVSRAG TGTYGKIWES STKCSIENFT FLKVLGKGSF GKVLLAELKG 501 550 ENSTTRP00000002166/1-671 KKEFFAIKAL KKDVVLIDDD VECTMVEKRV LALSGENPFL THLFCTFQTK ENSP00000378217/1-676 RGEYFAIKAL KKDVVLIDDD VECTMVEKRV LTLAAENPFL THLICTFQTK ENSBTAP00000011487/1-676 KKEFFAIKAL KKDVVLIDDD VECTMVEKRV LALAGDHPFL THLFCTFQTK bmy_09140T0/1-685 KKEFFAIKAL KKDVVLIDDD VECTMVEKRV LALSGENPFL THLFCTFQTK BACU005577/1-785 KKEFFAIKAL KKDVVLIDDD VECTMVEKRV LALSGENPFL THLFCTFQTK 551 600 ENSTTRP00000002166/1-671 DHLFFVMEFL NGGDLMYHIQ DKGRFELYRA TFYAAEIVCG LQFLHQKGII ENSP00000378217/1-676 DHLFFVMEFL NGGDLMYHIQ DKGRFELYRA TFYAAEIMCG LQFLHSKGII ENSBTAP00000011487/1-676 DHLFFVMEFL NGGDLMYHIQ DKGRFELSRA TFYAAEIVCG LQFLHQKGII bmy_09140T0/1-685 DHLFFVMEFL NGGDLMYHIQ DKGRFELYRA TFYAAEIVCG LQFLHQKGII BACU005577/1-785 DHLFFVMEFL NGGDLMYHIQ DKGRFELYRA T--------- ---------- 601 650 ENSTTRP00000002166/1-671 YRDLKLDNVM LDRDGHIKIA DFGMC-ENMF GDKQASTFCG -PDYXXXXXX ENSP00000378217/1-676 YRDLKLDNVL LDRDGHIKIA DFGMCKENIF GESRASTFCG TPDYIAPEIL ENSBTAP00000011487/1-676 YRDLKLDNVL LDHSGHIKIA DFGMCKENMS GDRQASTFCG TPDYIAPEIL bmy_09140T0/1-685 YRDLKLDNVM LDRDGHIKIA DFGMCKENMF GDKQASTFCG TPDYIAPEIL BACU005577/1-785 --DLKLDNVM LDRDGHIKIA DFGMCKENMF GDKQASTFCG TPDYIAPEIL 651 700 ENSTTRP00000002166/1-671 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPRW ENSP00000378217/1-676 QGLKYTFSVD WWSFGVLLYE MLIGQSPFHG DDEDELFESI RVDTPHYPRW ENSBTAP00000011487/1-676 QGLKYSFSVD WWSFGVLLYE MLIGQSPFHG DDEDELFESI RLDSPYYPRW bmy_09140T0/1-685 QGLKYSFSVD WWSFGVLLYE MLIGQSPFHG DDEDELFESI RVDSPYYPRW BACU005577/1-785 QGLKYSFSVD WWSFGVLLYE MLIGQSPFHG DDEDELFESI RVDSPYYPRW 701 750 ENSTTRP00000002166/1-671 ITRESKDILE KLLERDTTKR LGVTGNIKIH PFFKTINWAL LEKRAVEPPF ENSP00000378217/1-676 ITKESKDILE KLFEREPTKR LGVTGNIKIH PFFKTINWTL LEKRRLEPPF ENSBTAP00000011487/1-676 ITKESKDILE KLLERDVSKR LGVTGNIKIH PFFKTINWVL LEKRAVEPPF bmy_09140T0/1-685 ITRESKDILE KLLERDTARR LGVTGNIKIH PFFKTINWAL LEKRAVEPPF BACU005577/1-785 ITRESKDILE KLLERDTTRR LGVTGNIKIH PFFKTINWAL LEKRAVEPPF 751 800 ENSTTRP00000002166/1-671 KPKVRSAGDY NNFDQEFLNE KPRLSYSDKN LIDSMDQTAF AGFSFVNPKF ENSP00000378217/1-676 RPKVKSPRDY SNFDQEFLNE KARLSYSDKN LIDSMDQSAF AGFSFVNPKF ENSBTAP00000011487/1-676 KPKVKSPGDF SNFDQEFLNE KPRLSYSDKN LIESMDQTAF AGFSFVNPKF bmy_09140T0/1-685 KPRVRSPGDY SNFDQEFLNE KPRLSYSDKD LIDSMDQTAF AGFSFVNPKF BACU005577/1-785 KPRVRSPGDY SNFDQEFLNE KPRLSYSDKD LIDSMDQTAF AGFSFVNPKF 801 850 ENSTTRP00000002166/1-671 ERLLEN ENSP00000378217/1-676 EHLLED ENSBTAP00000011487/1-676 ERLLEN bmy_09140T0/1-685 EGLLEN BACU005577/1-785 EGLLEN