KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:50 2014 Check: 00 .. Name: ENSP00000339086/1-1049 Len: 1118 Check: 1865 Weight: 1.00 Name: ENSBTAP00000011499/1-1029 Len: 1118 Check: 6646 Weight: 1.00 Name: ENSTTRP00000006501/1-969 Len: 1118 Check: 7566 Weight: 1.00 Name: bmy_05417T0/1-865 Len: 1118 Check: 9714 Weight: 1.00 Name: BACU012943/1-1077 Len: 1118 Check: 8284 Weight: 1.00 // 1 50 ENSP00000339086/1-1049 MDHTGAIDTE DEVGPLAHLA PSPQSEAVAH EFQELSLQSS QNLPPLNERK ENSBTAP00000011499/1-1029 MDHTGALDTE DELGPLAHLA PSPQSEAVAH EFQELSLQSS QHLPPLNERK ENSTTRP00000006501/1-969 ---------- -MIDSSKKQQ QGFPEILAAG DFEPLKEKEC LEGSNQKSLK bmy_05417T0/1-865 ---------- ---------- ---------- ---------- --LSPF---- BACU012943/1-1077 MDHTGTLDTE DELGPLAHLA PSPQSEAVAH EFQELSLQSS QHLPPLNERK 51 100 ENSP00000339086/1-1049 NVLQLRLQQR RTREQLVDQG IMPPLKSPAA FHEQIKSLER ARTENFLKHK ENSBTAP00000011499/1-1029 NVLQLRLQQR RTREQLVDQG IMPPLKSPAA FHEQIKSLER ARTENFLKHK ENSTTRP00000006501/1-969 EVLQLRLQQR RTREQLVDQG IMPPLKSPAA FHEQIKSLER ARTENFLKHK bmy_05417T0/1-865 ---------- ---------- --------CL FH-------- ---------- BACU012943/1-1077 NVLQLRLQQR RTREQLVDQG IMPPLKSPAA FHEQIKSLER ARTENFLKHK 101 150 ENSP00000339086/1-1049 IRSRPDRSEL VRMHILEETF AEPSLQATQM KLKRARLADD LNEKIAQRPG ENSBTAP00000011499/1-1029 IRSRPDRSEL VRMHILEETF AEPSLQATQM KLKRARLADD LNEKIAQRPG ENSTTRP00000006501/1-969 IRSRPDRSEL VRMHILEETF AEPSLQATQM KLKRARLADD LNEKIAQRPG bmy_05417T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU012943/1-1077 IRSRPDRSEL VRMHILEETF AEPSLQATQM KLKRARLADD LNEKIAQRPG 151 200 ENSP00000339086/1-1049 PMELVEKNIL PVDSSVKEAI IGVGKEDYPH TQGDFSFDED SSDALSPDQP ENSBTAP00000011499/1-1029 PMELVEKNIL PVDSSVKEAI IGVGKEDYPQ TQGDFSFDED SSDALSPDQP ENSTTRP00000006501/1-969 PMELVEKNIL PVDSSVKEAI IGVGKEDYPQ TQGDFSFDED SSDALSPDQP bmy_05417T0/1-865 ---------- ---------- ---------- ---------- ---------- BACU012943/1-1077 PMELVEKNIL PVDSSVKEAI IGVGKEDYPQ TQGDFSFDED SSDALSPDQP 201 250 ENSP00000339086/1-1049 ASQESQGSAA SPSEPKVSES PSPVTTNTPA QFASVSPTVP EFLKTPPTAD ENSBTAP00000011499/1-1029 ASQESQGSAA SPSEPKVSES PSPVTTNTPA QFTPVSPAVP EFLKT-PTAD ENSTTRP00000006501/1-969 ASQESQGSAA SPSEPKVSES PSPVTANTPA QFTSVSPAVP EFLKT-PTAD bmy_05417T0/1-865 ---------- ---------- ---------- QFTSVSPAVP EFLKT-PTAD BACU012943/1-1077 ASQESQGSAA SPSEPKVSES PSPVTTNTPA QFTSVSPAVP EFLKT-PTAD 251 300 ENSP00000339086/1-1049 QPPPRPAAPV LPTNTVSSAK PGPALVKQSH PKNPNDKHRS KKCKDPKPRV ENSBTAP00000011499/1-1029 QPPPRSTAPV LPPSTTSSAK PGPALVKQSH PKNPNDKHRS KKCKDPKPRV ENSTTRP00000006501/1-969 QPPTRSTAPV LPTNTVSSAK PGPALVKQSH PKNPNDKHRS KKCKDPKPRV bmy_05417T0/1-865 QPPTRSTAPV LPTNTVSSAK PGPALVKQSH PKNPNDKHRS KKCKDPKPRV BACU012943/1-1077 QPPTRSTAPV LPTNTVSSAK PGPALVKQSH PKNPNDKHRS KKCKDPKPRV 301 350 ENSP00000339086/1-1049 KKLKYHQYIP PDQKGEKNEP QMDSNYARLL QQQQLFLQLQ ILS-QQKQHY ENSBTAP00000011499/1-1029 KKLKYHQYIP PDQKGERSEP HMDSNYARLL QQQQLFLQLQ ILS-QQQQHY ENSTTRP00000006501/1-969 KKLKYHQYIP PDQKGEKSEP PMDSNYARLL QQQQLFLQLQ ILSQQQQQHY bmy_05417T0/1-865 KKLKYHQYIP PDQKGEKSEP PMDSNYARLL QQQQLFLQLQ ILSQQQQQHY BACU012943/1-1077 KKLKYHQYIP PDQKGEKSEP PMDSNYARLL QQQQLFLQLQ ILSQQQQQHY 351 400 ENSP00000339086/1-1049 NYQTILPAPF K--------- ---PLNDKNS NSGNSALNNA TPNTPRQNTS ENSBTAP00000011499/1-1029 NYQTILPAPL K--------- ---PLNDKNN NSGNPALNTT TSNTPRQNTP ENSTTRP00000006501/1-969 NYQTILPAPL K--------- ---PLNDKNN NSGNPALNNT TSNTPRQNTS bmy_05417T0/1-865 NYQTILPAPL KYGLRSGRLR EAGPLNDKNN NSGNPALNNT TSNTPRQNTS BACU012943/1-1077 NYQTILPAPL K--------- ---PLNDKNN NSGNPVLNNT TSNTPRQNTS 401 450 ENSP00000339086/1-1049 TPVRKPGPLP SSLDDLKVSE LKTELKLRGL PVSGTKPDLI ERLKPYQEVN ENSBTAP00000011499/1-1029 APVRKPGPLP SSLDDLKVSE LKTELKLRGL PVSGTKLDLI ERLKPYQEVN ENSTTRP00000006501/1-969 APMRKPGPLP SSLDDLKVSE LKTELKLRGL PVSGTKLDLI ERLKPYQEMN bmy_05417T0/1-865 APMRKPGPLP SSLDDLKVSE LKTELKLRGL PVSGTKLDLI ERLKPYQEMN BACU012943/1-1077 APMRKPGPLP SSLDDLKVSE LKTELKLRGL PVSGTKLDLI ERLKPYQEMN 451 500 ENSP00000339086/1-1049 SSGLAAGGIV AVSSSAIVTS NPEVTVALPV TTLHNTVTSS VSTLKAELPP ENSBTAP00000011499/1-1029 SSGPAAGGVT AVPTPAIVPS NPEVTVALPV TTRQNSVTSS GSTFKAELPP ENSTTRP00000006501/1-969 SGGAATGGIV ALSTSAIVPS NPEVTMALPV TTLQNSVTSS GSTFKGELPS bmy_05417T0/1-865 SGGAATGGIV ALSTSAIVPS NPEVTLALPV TTLQNSVTSS GSTFKGELPS BACU012943/1-1077 SGGAATGGIV ALSTSAIVPS NPEVTLALPV TTLQNSVTSS GSTFKGELPS 501 550 ENSP00000339086/1-1049 TGTSNATRVE NVHSPLPISP SPSEQSSLST DDTNMADTFT EIMTMMSPSQ ENSBTAP00000011499/1-1029 ASSSSVAHVD SGSSPLPISP APSEQSSLSA EDTSMADTFT EIMTMMSPSQ ENSTTRP00000006501/1-969 AGSSSTAHVD SVSSPLPISP APSEQSSLSA EDASVADTFT EIMTMMSPSQ bmy_05417T0/1-865 AGTGHTAHVD SAASPLPISP APSEQSSLGA EDASVADTLT EIMTMMSPTQ BACU012943/1-1077 AGTGHTAHVD SAASPLPISP APSEQSSLSA EDASVADTFT EIMTMMSPTQ 551 600 ENSP00000339086/1-1049 FLSSSPLRMT NNEDSLSPTS STLSNLELDA AEKDRKLQEK EKQIEELKRK ENSBTAP00000011499/1-1029 FLCSSPLRAT STEDSLSPTS STLSTLELDA AEKDRKLQEK EKQIEELKRK ENSTTRP00000006501/1-969 FLCSSPLRAT STEDSLSPTS STLSTLELDA AEKDRKLQEK EKQIEELKRK bmy_05417T0/1-865 FLCSSPLRAT STEDSLSPAS STLSTLELDA AEKDRKLQEK EKQIEELKRK BACU012943/1-1077 FLCSSPLRAT SAEDSLSPAS STLSTLELDA AEKDRKLQEK EKQIEELKRK 601 650 ENSP00000339086/1-1049 LEQEQKLVEV LKMQLEVEKR G----QQQRP LEAQP--SAP GHSV-KSDQK ENSBTAP00000011499/1-1029 LEQEQKLVEV LKMQLEVEKR G---QQQQRP LEPPPPASTP APSVSKADQT ENSTTRP00000006501/1-969 LEQEQKLVEV LKMQLEVEKR G----QQQRP LEPPP--STP APPVPKSDQA bmy_05417T0/1-865 LEQEQKLVEV LKMQLEVEKR G--QQQPQRP LEPPP--GTP APPVPKSDQA BACU012943/1-1077 LEQEQKLVEV LKMQLEVEKR GQQQQQPQRS LEPPP--STL APPVAKSDHA 651 700 ENSP00000339086/1-1049 HGSLGSSIKD EASLPDCSSS RQPIPVASHA VGQPVSTGGQ TLVAKKAVVI ENSBTAP00000011499/1-1029 RGPTASTTKD EAPLPD---- ---------- --GPGPVAGQ SLVAKKAIVI ENSTTRP00000006501/1-969 RGGTAPAAKD EALVPD---- ---------- --GPSLVAGQ TLVAKKAIVI bmy_05417T0/1-865 RSGTAPAAKD EALVPD---- ---------- --GPSLVAGQ TLVAKKAIVI BACU012943/1-1077 RGGTAPAAKD EALVPD---- ---------- --GPSLVASQ TLVAKKAIVI 701 750 ENSP00000339086/1-1049 KQEVPVGQAE QQSVVSQFY- ---------- ---------- ---------- ENSBTAP00000011499/1-1029 KQEVPVAPAE PPSLVPQFY- ---------- ---------- ---------- ENSTTRP00000006501/1-969 KQEVPVAPAE PPSLVPQFYV SSQGQPPAGV AQPQALLTTH TTQLLLPVSI bmy_05417T0/1-865 KQEAPVAPAE PPSLVPQFYV SSQGQPPAGV AQPQALL--- TTQLLLPVSI BACU012943/1-1077 KQEVPVAPAE PPSLVPQFYV SSQGQPPTGV AQPQALL--- TTQLLLPVSI 751 800 ENSP00000339086/1-1049 ---------- --------TS PQAGMQTQPQ IATAAQIPTA ALASGLAPTV ENSBTAP00000011499/1-1029 ---------- --------TP PQTGLQTQPQ IA------AA TLSSGLAQAA ENSTTRP00000006501/1-969 QGSGVTSVQL PVGSLKLQTP PQTGIQAQTQ IA------TA TLSSGLAQAA bmy_05417T0/1-865 QGSGVTSVQL PVGSLRLQTP PQTGIQTQPQ IA------TA TLSSGLAQTA BACU012943/1-1077 QGSGVTSVQL PVGSLRLQTP PQTGIQTQPQ IA------TA TLSSGLAQTA 801 850 ENSP00000339086/1-1049 PQTQDTFPQH VLSQPQQVRK VFTNSASSNT VLPYQRHPAP AVQQPFINKA ENSBTAP00000011499/1-1029 PQKQDAFPAR TLGQPQQARK VFTSSA-SST VLPYQRPPAP AVQQPFINKA ENSTTRP00000006501/1-969 PQKQDTFTPH VLSQPQQVRK VFTNSA-SNT VLPYQRPPAP AVQQPFINKT bmy_05417T0/1-865 PQKQDTFTPH VLSQPQQVRK VFTNSV-SNT VVPYQRPPAP AVQQPFINKT BACU012943/1-1077 PQKQDTFTPH VLSQPQQVRK VFTNSV-SNT VVPYQRPPAP AVQQPFINKT 851 900 ENSP00000339086/1-1049 SNSVLQSRNA PLPSLQNGPN TPNKPSSPPP PQQFVVQHSL FGSPVAKTKD ENSBTAP00000011499/1-1029 NNSVLQPRST PLPSLQNGPS PPNKPGSPPP PQQFVVQHSL FGNPVPKTKD ENSTTRP00000006501/1-969 NSSILQPRST PLPSLQNGPN PPNKPASPPP PQQFAVQHSL FGSPVPKTKD bmy_05417T0/1-865 NNSILQPRST PLPSLQNGPN PPNKPGSPPP PQQFAVQHSL FGSPVPKTKD BACU012943/1-1077 NNSILQPRST PLPSLQNGPN PPNKPGSPPP PQQFAVQHSL FGSPVPKTKD 901 950 ENSP00000339086/1-1049 PPRYEEAIKQ TRSTQAPLPE ISNAHSQQMD DLFDILIKSG EISLPIKEEP ENSBTAP00000011499/1-1029 PPRYEEAIKQ TRSAQSSLPE ISNAHSQQMD DLFDILIKSG EISLPIKEEP ENSTTRP00000006501/1-969 PPRYEEAIKQ TRSAQSSLPE ISNAHSQQMD DLFDILIKSG EISLPIKEEP bmy_05417T0/1-865 PPRYEEAIKQ TRSAQSSLPE ISNAHSQQMD DLFDILIKSG EISLPIKEEP BACU012943/1-1077 PPRYEEAIKQ TRSAQSSLPE ISNAHSQQMD DLFDILIKSG EISLPIKEEP 951 1000 ENSP00000339086/1-1049 SPISKMRPVT ASITTMPVNT VVSRPPPQVQ MAPPVSLEPM GSLSASLENQ ENSBTAP00000011499/1-1029 SPISKMRPVT ASITTMPVST VVSRPPPQVQ MAPPISLEPM SSLSASLENQ ENSTTRP00000006501/1-969 SPISKMRPVT ASITTMPVST VVSRPPPQVQ MAPPISLEPM SSLSASLENQ bmy_05417T0/1-865 SPISKMRPVT ASITTMPVST VVSRPPPQVQ VAPPISLEPM SSLSASLENQ BACU012943/1-1077 SPISKMRPVT ASVTTMPVST VVSRPPPQVQ TAPPMSLEPM SSLSASLENQ 1001 1050 ENSP00000339086/1-1049 LEAFLDGTLP SANEIPPLQS SSEDREPFSL IEDLQNDLLS HSGMLDHSHS ENSBTAP00000011499/1-1029 LEAFLDGTLP SANEIAPLQS GSEDREPFSL IEDLQNDLLS HSGVLDPSHS ENSTTRP00000006501/1-969 LEAFLDGTLP SASEIAPLQS SS-------- ---------- ---------- bmy_05417T0/1-865 LEAFLDGTLP SASEIAPLQS SSEDREPFSL IEDLQNDLLS HSGVLDHSHS BACU012943/1-1077 LEAFLDGTLP SASEIAPLQS SSEDREPFSL IEDLQNDLLS HSGVLDHSHS 1051 1100 ENSP00000339086/1-1049 PMETSETQFA AGTPCLSLDL SDSNLDNMEW LDITMPNSSS GLTPLSTTAP ENSBTAP00000011499/1-1029 PMETAEAQFA ASTPCLSLDL SDSNLDNMEW LDITMPGTSS GLTPLSATTP ENSTTRP00000006501/1-969 ---------- ---------- ---------- ---------- ---------- bmy_05417T0/1-865 PMETSEAQFA ASTPCLSLDL SDSNLDNMEW LDITMPGTSS GLTPLSATAP BACU012943/1-1077 PMETSEAQFA ASTPCLSLDL SDSNLDNMEW LDLTMPGTSS GLTPLSATAP 1101 1150 ENSP00000339086/1-1049 SMFSADFLDP QDLPLPWD ENSBTAP00000011499/1-1029 SMFSADFLDP QDLPLPWD ENSTTRP00000006501/1-969 ---------- -------- bmy_05417T0/1-865 SMFSADFLDP QDLPLPWD BACU012943/1-1077 SMFSADFLDP QDLPLPWD