KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:43:53 2014  Check: 00 ..

 Name: ENSTTRP00000005004/1-211  Len:    212  Check:  9717  Weight:  1.00
 Name: ENSP00000265191/1-212     Len:    212  Check:  2471  Weight:  1.00
 Name: bmy_12154T0/1-149         Len:    212  Check:  7908  Weight:  1.00
 Name: ENSBTAP00000011530/1-209  Len:    212  Check:  5004  Weight:  1.00

//


                          1                                                   50
ENSTTRP00000005004/1-211  MELSMPPPQI CVEKTLAIIK PDIVDKEEEI QDIILRSGFT IVQRRKLRLS 
ENSP00000265191/1-212     MEISMPPPQI YVEKTLAIIK PDIVDKEEEI QDIILRSGFT IVQRRKLRLS 
bmy_12154T0/1-149         MELSMPPPQI YVEKTLAIIK PDIVDKEEEI QDIILRSGFT IVQRRKLHLS 
ENSBTAP00000011530/1-209  MELSMPPPQI YVEKTLAIIK PDIVDKEEEI QDIILRSGFT IVQRRKLHLS 


                          51                                                 100
ENSTTRP00000005004/1-211  PEQCSNFYVE QYGKMFFPNL TAYMSSGPLV AMILARFKAI SYWKELLGPS 
ENSP00000265191/1-212     PEQCSNFYVE KYGKMFFPNL TAYMSSGPLV AMILARHKAI SYWLELLGPN 
bmy_12154T0/1-149         PEHCSNFYVE QYGKMFFPNL TAYMSSGPLV AMILARHKAI SYWKELLGPS 
ENSBTAP00000011530/1-209  PEHCSNFYVE QYGKMFFPNL TAYMSSGPLV AMILARYNAI SYWKELLGPS 


                          101                                                150
ENSTTRP00000005004/1-211  NSLVA-ETHP DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXIVEP 
ENSP00000265191/1-212     NSLVAKETHP DSLRAIYGTD DLRNALHGSN DFAAAEREIR FMFPEVIVEP 
bmy_12154T0/1-149         NSLVAKETHP DSLRAIYGTD ELRNALHGSN DFAAAEREMR FMFP------ 
ENSBTAP00000011530/1-209  NSLVAKETHP DSLRAIYGTD ELRNALHGSN DFAAAEREIR FMFPAVIVEP 


                          151                                                200
ENSTTRP00000005004/1-211  IPVGQAAKDY LNVHVMPTLL KGLSELCKQK PADPFIWLAD WLLKNNPNKP 
ENSP00000265191/1-212     IPIGQAAKDY LNLHIMPTLL EGLTELCKQK PADPLIWLAD WLLKNNPNKP 
bmy_12154T0/1-149         ---------- ---------- ---------- --------AD FHF------- 
ENSBTAP00000011530/1-209  IPVGQAAKDY LNLYVTPTLL KGLTELCKQK PADPFIWLAD WLLKNNPNKP 


                          201                                                250
ENSTTRP00000005004/1-211  KLCHHPVAEE PY 
ENSP00000265191/1-212     KLCHHPIVEE PY 
bmy_12154T0/1-149         ---------- -- 
ENSBTAP00000011530/1-209  KLCHHPVAE- --