KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:55 2014 Check: 00 .. Name: ENSP00000254900/1-1235 Len: 1437 Check: 2489 Weight: 1.00 Name: ENSBTAP00000011535/1-1169 Len: 1437 Check: 597 Weight: 1.00 Name: ENSTTRP00000005049/1-1233 Len: 1437 Check: 2976 Weight: 1.00 Name: bmy_12153T0/1-1102 Len: 1437 Check: 4473 Weight: 1.00 Name: BACU004100/1-1384 Len: 1437 Check: 1719 Weight: 1.00 // 1 50 ENSP00000254900/1-1235 MATGTGKHKL LSTGPTEPWS IREKLCLASS VMRSGDQNWV SVSRAIKPFA ENSBTAP00000011535/1-1169 MATGTGKHKL LSTGPTEPWS IREKLCLASS VMRSGDQNWV SVSRAIKPFA ENSTTRP00000005049/1-1233 MATGTGKHKL LSTGPTEPWS IREKLCLASS VMRSGDQNWV SVSRAIKPFA bmy_12153T0/1-1102 ---------- ---------- ---------- ---------- ---------- BACU004100/1-1384 MATGTGKHKL LSTGPTEPWS IREKLCLASS VMRSGDQNWV SVSRAIKPFA 51 100 ENSP00000254900/1-1235 EPGRPPDWFS QKHCASQYSE LLETTETPKR KRGEKGEVVE TVEDVIVRKL ENSBTAP00000011535/1-1169 EPGRPPDWFS QKHCASQYSE LLETTETPKR KRGEKGEVVE TVEDVIVRKL ENSTTRP00000005049/1-1233 EPGRPPDWFS QKHCASQYSE LLETTETPKR KRGEKGEVVE TVEDVIVRKL bmy_12153T0/1-1102 ---------- ---------- ---------- ---------- ---------- BACU004100/1-1384 EPGRPPDWFS QKHCASQYSE LLETTETPKR KRGEKGEVVE TVEDVIVRKL 101 150 ENSP00000254900/1-1235 TAERVEELKK VIKETQERYR RLKRDAELIQ AGHMDSRLDE LCNDIATKKK ENSBTAP00000011535/1-1169 TAERVEELKK VIKETQEKYR RLKRDAELIQ AGHMDSRLDE LCNDIAMKKK ENSTTRP00000005049/1-1233 TAERVEELKK VIKETQEKYR RLKRDAELIQ AGHMDSRLDE LCNDIAMKKK bmy_12153T0/1-1102 ---------- ---------- ---------- ---MDSRLDE LCNDIAMKKK BACU004100/1-1384 TAERVEELKK VIKETQEKYR RLKRDAELIQ AGHMDSRLDE LCNDIAMKKK 151 200 ENSP00000254900/1-1235 LEEEEAEVKR KATDAAYQAR QAVKTPPRRL PTVMVRSPID SASPGGDYPL ENSBTAP00000011535/1-1169 LEEEEAEVKR KATDAAYQAR QAVKTPPRRL PTVMVRSPID SASPGGDYPL ENSTTRP00000005049/1-1233 LEEEEAEVKR KATDAAYQAR QAVKTPPRRL PTVMVRSPID SASPGGDYPL bmy_12153T0/1-1102 LEEEEAEVKR KATDAAYQAR QAVKTPPRRL PTVMVRSPID SASPGGDYPL BACU004100/1-1384 LEEEEAEVKR KATDAAYQAR QAVKTPPRRL PTVMVRSPID TASPGGDYPL 201 250 ENSP00000254900/1-1235 GDLTPTTMEE ATSG------ ---------- ---------- ---------- ENSBTAP00000011535/1-1169 GDLSATTMEE AASG------ ---------- ---------- ---------- ENSTTRP00000005049/1-1233 ADLTATTMEE ATSG------ ---------- ---------- ---------- bmy_12153T0/1-1102 ADLTATTMEE ATSGVTPGTL PSTPVTSFPG IPDTLPPGSA PLEAPMTPVT BACU004100/1-1384 ADLTATTMEE ATSGVTPGTL PSTPVTSFPG IPDTLPPGSA PLEAPMTPVT 251 300 ENSP00000254900/1-1235 ---------- ---------- ---------- -------VNE SEMAVASGHL ENSBTAP00000011535/1-1169 ---------- ---------- ---------- -------VNE SEMAVASGHL ENSTTRP00000005049/1-1233 ---------- ---------- ---------- -------VNE SEMAVASGHL bmy_12153T0/1-1102 DDSPQKKMLG QKATPPPSPL LSELLKKGSL LPTSPRLVNE SEMAVASGHL BACU004100/1-1384 DDSPQKKMLG QKATPPPSPL LSELLKKGSL LPTSPRLVNE SEMAVASGHL 301 350 ENSP00000254900/1-1235 NSTGVLLEVG GVLPMIHGGE IQQTPNTVAA SPAASGAPTL SRLLEAGPTQ ENSBTAP00000011535/1-1169 NSTGVLLEVG GVLPMIHGGE MQQTPSTVAA SPAASGTPTL SRLLEAGPTQ ENSTTRP00000005049/1-1233 NSTGVLLEVG GVLPMIHGGE MQQTPNTVAA SPAASGAPTL SRLLEAGPTQ bmy_12153T0/1-1102 NSTGVLLEVG GVLPMIHGGE TQQTPNTVAA SPAASGAPTL SRLLEAGPTQ BACU004100/1-1384 NSTGVLLEVG GVLPMIHGGE MQQTPNTVAA SPAAS----- ----EAGPTQ 351 400 ENSP00000254900/1-1235 FTTPLASFTT VASEPPVKLV PPPVESVSQA TIVMMPALPA PSSAPAVSTT ENSBTAP00000011535/1-1169 FTTPLASFTT VASEPPVKLV APPVESVSQA TIVMMPALPA PSSAPAVSTP ENSTTRP00000005049/1-1233 FTTPLASFTT VASEPPVKIV PPPVESVSQA TIVMMPALPA PSSAPAVSTP bmy_12153T0/1-1102 FTTPLASFTT VASEPPVKIV PPPVESVSQA TIVMMPALPA PSSAPAVSTS BACU004100/1-1384 FTTPLASFTT VASEPPVKIV PPPVESVSQA TIVMMPALPA PSSAPAVSTP 401 450 ENSP00000254900/1-1235 ESVAPVSQPD NCVPMEAVGD PHTVTVSMDS SEISMIINSI KEECFRSGVA ENSBTAP00000011535/1-1169 ESVAPVSQPD TCVPMEAVGD PHTVTVSMDS NEISMIINSI KEECFRSGVA ENSTTRP00000005049/1-1233 ESVAPVSQPD TCVPMEAVGD PHTVTVSMDS SEISMIINSI KEECFRSGVA bmy_12153T0/1-1102 ESVAPVSQPD TCVPMEAVGD PHTVTVSMDS SEISMIINSI KEECFRSGVA BACU004100/1-1384 ESVAPVSQPD TCVPMEAVGD PHTVTVSMDS SEISMIINSI KEECFRSGVA 451 500 ENSP00000254900/1-1235 EAPVGSKAPS IDGKEELDLA EKMDIAVSYT GEELDFETVG DIIAIIEDKV ENSBTAP00000011535/1-1169 EAPGGSKAPS IDGKEDLDLA EKMDIAVSYT GEELDFETVG DIIAIIEDKV ENSTTRP00000005049/1-1233 EAPGGSKAPS IDGKEDLDLA EKMDIAVSYT GEELDFETVG DIIAIIEDKV bmy_12153T0/1-1102 EAPGGSKAPS IDGKEDLDLA EKMDIAVSYT GEELDFETVG DIIAIIEDKV BACU004100/1-1384 EAPGGSKAPS IDGKEDLDLA EKMDIAVSYT GEELDFETVG DIIAIIEDKV 501 550 ENSP00000254900/1-1235 DDHPEVLDVA AVEAALSFCE ENDDPQSLPG PWEHPIQQER DKPVPLPAPE ENSBTAP00000011535/1-1169 DDHPEVLDVA AVEAALSFCE ENDDPQSLPG PWEHSIQQER DKPVPLPAPE ENSTTRP00000005049/1-1233 DDHPEVLDVA AVEAALSFCE ENDDPQSLPG PWEHPMQQER DKPVPLPAPE bmy_12153T0/1-1102 DDHPEVLDVA AVEAALSFCE ENDDPQSLPG PWEHPIQQER DKPVPLPAPE BACU004100/1-1384 DDHPEVLDVA AVEAALSFCE ENDDPQSLPG PWEHPIQQER DKPVPLPAPE 551 600 ENSP00000254900/1-1235 MTVKQERLDF EETENKGIHE LVDIREPSAE IKVEPAEPEP VISGAEIVAG ENSBTAP00000011535/1-1169 MTVKQERLDF EDTESKGIHE LVDIREPGVE IKMEPAEPEQ GISGAEMVSG ENSTTRP00000005049/1-1233 MTVKQERLDF EETESKGIHE LVDIREPSVE IKMEPAEPEQ GISGAEIVSG bmy_12153T0/1-1102 MTVKQERLDF EETESKGIHE LVDIREPSVE IKMEPAEPEQ GISGAEIVSG BACU004100/1-1384 MTVKQERLDF EETESKGIHE LVDIREPSVE IKMEPAEPEQ GISGAEIVSG 601 650 ENSP00000254900/1-1235 VVPATSMEPP ELRSQDLDEE LGSTAAGEIV EADVAIGKGD ETPLTNVKTE ENSBTAP00000011535/1-1169 VVPATNMEPP ELRSQDLDEE PRSIATGEIT EADVSSRKGD ETPLTAVKTE ENSTTRP00000005049/1-1233 VVPATSMEPP ELRSQDLDEE PRSTATGEIT EADASSRRGD ETPITTVKTE bmy_12153T0/1-1102 VVPATSMEPP ELRSQDLDEE PRSTATGEIT EADASSRRGD ETPITTVKTE BACU004100/1-1384 VVPAMSMEPP ELRSQDLNEE PRSTATGEIT EADASSRRGD ETPITTVKTE 651 700 ENSP00000254900/1-1235 ASPESMLSPS H-GSNPIEDP LEAETQHKFE MSDSLKEESG TIFGSQIKDA ENSBTAP00000011535/1-1169 ASPESMLSPS HVVSNPIEDP LEAETQHKFE MSDSLKEESG TIFGSQIKDA ENSTTRP00000005049/1-1233 ASPESMLSPS H-GSNPIEDP LESETQHKFE MSXXXXXXXX XXXXXXXXDA bmy_12153T0/1-1102 ASPESMLSPS H-GSNPIEDP LESETQHKFE MSDSLKEESG TIFGSQIKDA BACU004100/1-1384 ASPESMLSPS H-GSNPIEDP LESETQHKFE MS-------- ---------- 701 750 ENSP00000254900/1-1235 PGEDEEEDGV SEAASLEEPK EEDQGEGYLS EMDNEPPVSE SDDGFSIHNA ENSBTAP00000011535/1-1169 PGEDEEEDGV SEAASLEEPK EEDQGEGYLS EMDNEPPVSE SDDGFSIHNA ENSTTRP00000005049/1-1233 PGEDEEEDGV SEAASLEEPK EEDQGEGYLS EMDNEPPVSE SDDGFSIHNA bmy_12153T0/1-1102 PGEDEEEDGV SEAASLEEPK EEDQGEGYLS EMDNEPPVSE SDDGFSIHNA BACU004100/1-1384 -GEDEEEDGV SEAASLEEPK EEDQGEGYLS EMDNEPPVSE SDDGFSIHNA 751 800 ENSP00000254900/1-1235 TLQSHTLADS IPSSPASSQF SVCSEDQEAI QAQKIWKKAI MLVWRAAANH ENSBTAP00000011535/1-1169 TLQSHTLADS IPSSPASSQF SVCSEDQEAI QAQKIWKKAI MLVWRAAANH ENSTTRP00000005049/1-1233 TLQSHTLADS IPSSPASSQF SVCSEDQEAI QAQKIWKKAI MLVWRAAANH bmy_12153T0/1-1102 TLQSHTLADS IPSSPASSQF SVCSEDQEAI QAQKIWKKAI MLVWRAAANH BACU004100/1-1384 TLQSHTLADS IPSSPASSQF SVCSEDQEAI QAQKIWKKAI MLVWRAAANH 801 850 ENSP00000254900/1-1235 RYANVFLQPV TDDIAPGYHS IVQRPMDLST IKKNIENGLI RSTAEFQRDI ENSBTAP00000011535/1-1169 RYANVFLQPV TDDIAPGYHS IVQRPMDLST IKKNIENGLI RSTAEFQRDI ENSTTRP00000005049/1-1233 RYANVFLQPV TDDIAPGYHS IVQRPMDLST IKKNIENGLI RSTAEFQRDI bmy_12153T0/1-1102 RYANVFLQPV TDDIAPGYHS IVQRPMDLST IKKNIENGLI RSTAEFQRDI BACU004100/1-1384 RYANVFLQPV TDDIAPGYHS IVQRPMDLST IKKNIENGLI RSTAEFQRDI 851 900 ENSP00000254900/1-1235 MLMFQNAVMY NSSDHDVYHM AVEMQRDVLE QIQQFLATQL IMQTSESGIS ENSBTAP00000011535/1-1169 MLMFQNAVMY NSSDHDVYHM AVEMQRDVLE QIQQFLATQL IMQTSESGIS ENSTTRP00000005049/1-1233 MLMFQNAVMY NSSDHDVYHM AVEMQRDVLE QIQQFLATQL IMQTSESGIS bmy_12153T0/1-1102 MLMFQNAVMY NSSDHDVYHM AVEMQRDVLE QIQQFLATQL IMQTSESGIS BACU004100/1-1384 MLMFQNAVMY NSSDHDVYHM AVEMQRDVLE QIQQFLATQL IMQTSESGIS 901 950 ENSP00000254900/1-1235 AKSLRGRDST RKQDASEKDS VPMGSPAFLL SLFMGHEWVW LDSEQDHPND ENSBTAP00000011535/1-1169 AKSLRGRDST RKQDASEKDS VPMGSPAFLL SLFMGHDWGW LDSEQDYPND ENSTTRP00000005049/1-1233 AKSLRGRDST RKQDSSEKDS VPMGSPAFLL SLFMRHEWVW LDSEQDYPND bmy_12153T0/1-1102 AKSLRGRDST RKQDSSEKDS VPMGSPAFLL SLFMGHEWVW LDSEQDYPND BACU004100/1-1384 AKSLRGRDST RKQDSSEKDS VPMGSPAFLL SLFMGHEWVW LDSEQDYPND 951 1000 ENSP00000254900/1-1235 SELSNDCRSL FSSWDSSLDL DVGNWRETED PEAEELEESS PEREPSELLV ENSBTAP00000011535/1-1169 SELSNDCRSL FSSWDSSFDL DVGSWRETEE PGAEELEESS PGREASELLV ENSTTRP00000005049/1-1233 SELSNDCRSL FSSWDSSLDL DLGSWRETEE PGAEELEESS PGREPRELLV bmy_12153T0/1-1102 SELSNDCRSL FSSWDSSLDL DMGSWRETEE PGAEELEESS PGREPRELLV BACU004100/1-1384 SELSNDCRSL FSSWDSSLDL DMGSWRETEE PGAEELEESS PGREPRELLV 1001 1050 ENSP00000254900/1-1235 GDGGSEESQE AARKASHQNL LHFLSEVAYL MEPLCISSNE SSEGCCPPSG ENSBTAP00000011535/1-1169 RDGGSEESQE EAEQVSRQNL L-FLSEVAYL MEPLCISSKE SSEGCCPSSG ENSTTRP00000005049/1-1233 GDGGSEESQE EAEQVSCQNL LHFISEVVYL MEPLCISKKE SGEGCCPSSG bmy_12153T0/1-1102 GDGGSEESQE EAEHVSRQNL LHFLSEVAYL MEPLCISSKE SGQ---PSF- BACU004100/1-1384 GDGGSEESQE EAEHVSCQNL LHFLSEVAYL MEPLCISSKE SGEGCCPSSG 1051 1100 ENSP00000254900/1-1235 TR-QEGREIK ASEGERELCR ETEELSAKGD PLVAEKP-LG ENGKPEVASA ENSBTAP00000011535/1-1169 TK-QEAREIE ATEGEGEPYR EPEELSAKED PSVTEKSSLG ENGRPEVTPP ENSTTRP00000005049/1-1233 TRQQEARGIE ATEGEGEPCK EPEELSAKVD PLVTEKSLLG ENGRPEVAPP bmy_12153T0/1-1102 ---------- ------TPCK ---------- -----KNYLE DS--KSLSKL BACU004100/1-1384 TRQQEARGIE ATEGEGEPCK EPEELSAKVD PLVAEKSLLG ENGRPEVAPP 1101 1150 ENSP00000254900/1-1235 PSVICTVQGL LTESEEGEAQ QESKGEDQGE VYVSEMEDQP PSGECDDAFN ENSBTAP00000011535/1-1169 PSDILALQEQ PIESKEGGVQ QESKEEDQGE GYVSEMEDQR SSGDCDNGCS ENSTTRP00000005049/1-1233 PSDIWALQEQ PTASEEGEVQ QESKEQDQSE GYVSEMEDQR SSGECDDSFS bmy_12153T0/1-1102 SFDSW----- ---HSQGEVQ QESKEEDQSE GYVSEMEDQR SSGECDDSFS BACU004100/1-1384 PSDIWALQEQ PTESEEGEVQ QESKEEDQSE GYVSEMEDQR SSGECDESFS 1151 1200 ENSP00000254900/1-1235 IKETPLVDTL FSHATSSKLT DLSQDDPVQD HLLFKKTLLP VWKMIASHRF ENSBTAP00000011535/1-1169 TQETPLVDIL VSRATSSKLS DLCHGDPIQD QLLFKKTLLP VWKMIASHRF ENSTTRP00000005049/1-1233 IQETPLVDIL FSHATSSKLS DLGHSDPVQD HLLFKKTLLP VWKMIASHRF bmy_12153T0/1-1102 IQETPLVDIL FSRATSSKLS DLGHSDPVQD HLLFKKTLLP VWKMIASHRF BACU004100/1-1384 IQETPLVDIL FSRATSSKLS DLDHSDPVQD HLLFKKTLLP VWKMIASH-- 1201 1250 ENSP00000254900/1-1235 SSPFLKPVSE RQAPGYKDVV KRPMDLTSLK RNLSKGRIRT MAQFLRDLML ENSBTAP00000011535/1-1169 SSPFLKPVSE RQAPGYKDVV KRSVEKGSRK RKTLKGKLYS FSRY------ ENSTTRP00000005049/1-1233 SSLFLKPVSE RQAPGYKDVV KRPMDLTSLK RNLSKGRIRT VAQFQRDLML bmy_12153T0/1-1102 SSPFLKPVSE RQAPGYKDVV KRPMDLTSLK RNLSKGRIHT VAQFQRDLML BACU004100/1-1384 ---------- ---------- -RPMDLTSLK RNLSKGRIHT VAQFQRDLML 1251 1300 ENSP00000254900/1-1235 MFQNAVMYND SDHHVYHMAV EMRQEVLEQI Q--------- ---------- ENSBTAP00000011535/1-1169 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005049/1-1233 MF-DAVMYND SDH-VYRMAV EMQREVLEQI ---------- ---------- bmy_12153T0/1-1102 MFQNAVMYND SDHQVYHMAV EMQREVLEQI Q--------- ---------- BACU004100/1-1384 MFQNAVMYND SDHQVYHMAV EMQREVLEQI QRRKLHLSPE HCSNFYVEQY 1301 1350 ENSP00000254900/1-1235 ---------- ---------- ------VLNI WLDKRKGSSS LEGEPANPVD ENSBTAP00000011535/1-1169 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005049/1-1233 ---------- ---------- ------VLSI WLDERRVLNS LE-ELTSPMD bmy_12153T0/1-1102 ---------- ---------- ---------- ---------- ---------- BACU004100/1-1384 GKMFFPNLTA YMSSGPLVAM ILARHKAISY WNELLGPSNS LVAKETHP-D 1351 1400 ENSP00000254900/1-1235 DGKPVF---- ---------- ---------- ---------- ---------- ENSBTAP00000011535/1-1169 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005049/1-1233 DGKPIF---- ---------- ---------- ---------- ---------- bmy_12153T0/1-1102 ---------- ---------- ---------- ---------- ---------- BACU004100/1-1384 SLRAIYGTDE LRNALHGSND FAAAEREIRF MFPAVIVEPI PVGQAAKDYL 1401 1450 ENSP00000254900/1-1235 ---------- ---------- ---------- ------- ENSBTAP00000011535/1-1169 ---------- ---------- ---------- ------- ENSTTRP00000005049/1-1233 ---------- ---------- ---------- ------- bmy_12153T0/1-1102 ---------- ---------- ---------- ------- BACU004100/1-1384 NLYVTPTLLK GLTELCKQKP ADPFVRNFFI HTKEYCL