KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:43:58 2014 Check: 00 .. Name: BACU010340/1-91 Len: 333 Check: 3530 Weight: 1.00 Name: ENSP00000360166/1-298 Len: 333 Check: 9369 Weight: 1.00 Name: bmy_22341T0/1-251 Len: 333 Check: 5400 Weight: 1.00 Name: ENSBTAP00000011543/1-295 Len: 333 Check: 6068 Weight: 1.00 Name: ENSTTRP00000016011/1-298 Len: 333 Check: 2440 Weight: 1.00 // 1 50 BACU010340/1-91 ---------- ---------- ---------- --------MF IFIKHG--DT ENSP00000360166/1-298 ---------- MACIEN---- ---------- ---------- VLGGHAPSPL bmy_22341T0/1-251 AQEIKYAFNS LACCDTDNRE GWVAKDAEGD HRQKREGHKF SLGGHAPSPT ENSBTAP00000011543/1-295 ---------- MACIEN---- ---------- ---------- VLGGHAPSPT ENSTTRP00000016011/1-298 ---------- MACTEN---- ---------- ---------- VLGGHAPSPT 51 100 BACU010340/1-91 IDLCDAMGTM QLF--FLMKA LGD------- -YANKFLTAR NTYYVC---- ENSP00000360166/1-298 VVSVDKNGNQ ELHHDMPLQC LSSKPEDDAE PWGQPQVPLR PSVNVLTDLD bmy_22341T0/1-251 AVAADEHGNP ELRPGVPLQC PSSMQKDDAE SWGLPRVPLR PPFNVLTDLA ENSBTAP00000011543/1-295 AVAAAENGNR EPRPSLPFQC P----KDDAG SWGHPGVPLR PPFKVLSDLA ENSTTRP00000016011/1-298 AVAADEHGTP ELRPGVPLQC PSSMQKDDVE SWGLPRVPLR PPFNVLADLA 101 150 BACU010340/1-91 ---------R VEHVAPGTGL KNAYRAFVPL LKNPEPKI-- ---------- ENSP00000360166/1-298 SKQLEWPSER TGSCIPLHSL RAHRHPYGPP PAVAEESLAT AEVNSSDALA bmy_22341T0/1-251 REQLERPSER TGSCIPVDGS RALNPPYEPP PAVAEESLAT AEVNSSEGLA ENSBTAP00000011543/1-295 RERLERPSER TGSCIPVDGW RALKPPYGPP PAVAEEPLAT GEVNSSEGPA ENSTTRP00000016011/1-298 REQLERPSER TGSCIPVDDS RALNPPYEPP PAVAEESLAT AEVNSSEGLA 151 200 BACU010340/1-91 ---------- --IGKEHDGG RRNM------ ---------- ---------- ENSP00000360166/1-298 GWRQEGQDAI -NVSWEVSGG PPALIVGGTK VNNGGTERGS NNARLHVALP bmy_22341T0/1-251 GRRQRGQDAI -NVSREFSGG PPALMVGGTR VSNGGTERGG SNARLYVALP ENSBTAP00000011543/1-295 GWRQSGQDSI NNVSQEFSGS PPALMVGGTK VSNGGTERGG SNAGLYVALP ENSTTRP00000016011/1-298 GRRQRGQDSI -NVSREFSGG PPALMVGGTR VSNGGTERGG SNAKLYVALP 201 250 BACU010340/1-91 ---------- ---------- ---EGTV--- ---------- ---------- ENSP00000360166/1-298 QGKGFFPPRG PQVRGPSHIP TLRSGIVMEV PPGNTRIACR GKLAHVSFPL bmy_22341T0/1-251 RGQGFFPSRG SQFVQRVK-S KVKSGLV--- ----NLVIVR GALDKGSI-- ENSBTAP00000011543/1-295 RGQGFFPSRG PQVRGPTHIS TLRSGIMMEL PPGSTRVTGK ERLARVSFPL ENSTTRP00000016011/1-298 RGQGFFPSRG SQVRGPPPIP TLRSGIMMEV PPGNTRVTCK ERLAHVSFPL 251 300 BACU010340/1-91 ---------- ---------- ---------- ---------- ---------- ENSP00000360166/1-298 RGPCHPMHNW PRPIPLSSST PGLPSCSTVH CFIPPRPPIF NPFLTMPLPF bmy_22341T0/1-251 ---------W ---MELAK-- ---------- ---------- -----IPLTL ENSBTAP00000011543/1-295 GGPRHPVKNW PRPMPLASST TGLGSRTTAH CFIPPRPPSF NPFLAMPMAF ENSTTRP00000016011/1-298 GGPRHPVENW PRPMPLSSST PGLPSCTTAH CFIPPRPPSF NPFLAMPMAF 301 350 BACU010340/1-91 ---------- ---------- ---------- --- ENSP00000360166/1-298 APPPIFGPPL PSYFAHFHSG GMPAPASPNR EHS bmy_22341T0/1-251 S--------- ---------- ---------- --- ENSBTAP00000011543/1-295 APPPIFGPPL PSCFADFPSW GMPAPASSNR ENN ENSTTRP00000016011/1-298 APPPIFGPPL PSYFANFPSW GMLAPASSNR ENN