KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:02 2014 Check: 00 .. Name: ENSP00000337949/1-479 Len: 560 Check: 4401 Weight: 1.00 Name: ENSBTAP00000011575/1-484 Len: 560 Check: 2273 Weight: 1.00 Name: ENSTTRP00000013945/1-306 Len: 560 Check: 5790 Weight: 1.00 Name: bmy_13209T0/1-507 Len: 560 Check: 6199 Weight: 1.00 Name: BACU012485/1-232 Len: 560 Check: 4603 Weight: 1.00 // 1 50 ENSP00000337949/1-479 MMDVNSSGRP DLYGHLRSFL LPEVGRGLPD LS-------- ---------- ENSBTAP00000011575/1-484 MMDVNSSGRP DLYGHLRSFF LPEVGRGLPD LS-------- ---------- ENSTTRP00000013945/1-306 ---------- ---------- ---------- ---------- ---------- bmy_13209T0/1-507 ---MSKSESP KEPEQLRKLF IRGLSFETTD ESLRSHFEQW GTLTDCVVMR BACU012485/1-232 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000337949/1-479 ---------- ---------- ----PDGGAD PVAGSWAPHL LS---EVTAS ENSBTAP00000011575/1-484 ---------- ---------- ----PD-GAG PVAGSWAPHL LHGVVEVTAS ENSTTRP00000013945/1-306 ---------- ---------- ---------- ---------- ---------- bmy_13209T0/1-507 DPNTRRSRGF GFVTYTTVEE VDAAVKAKPH EVDGRVGEPK RAVSREDSQR BACU012485/1-232 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000337949/1-479 PAPTWDAPPD NASGCGEQIN YGRVEKVVIG SILTLITLLT IAGNCLVVIS ENSBTAP00000011575/1-484 PGPTRDTPRD NTSGCWEQIN YGRAEKVVIG SILTLITLLT IAGNCLVVIS ENSTTRP00000013945/1-306 ---------- ---------- ---------- ---------- ---------- bmy_13209T0/1-507 PGAHLTVKKS FVGGIKEDTE EHHLRDYFEQ YGKIEVIEIT TDGGSGKKRG BACU012485/1-232 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000337949/1-479 VCFVKKLRQP S-------NY LIVSLALADL SVAVAVMPFV SVTDLIGGKW ENSBTAP00000011575/1-484 VCFVKKLRQP S-------NY LIVSLALADL SVAVAVMPFV SVTDLIGGKW ENSTTRP00000013945/1-306 ---------- ---------- ---------- ---------- ---------- bmy_13209T0/1-507 FAFVTFDNHD SVDEIVIQKY HTVNGHNCEV RKALSQQEMA SASSSQRGRS BACU012485/1-232 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000337949/1-479 IFGHF----- ---------- ---------- FCNVFIAMDV MCCTASIMTL ENSBTAP00000011575/1-484 IFGHF----- ---------- ---------- FCNVFIAMDV MCCTASIMTL ENSTTRP00000013945/1-306 ---------- ---------- ---------- ---------- ---------- bmy_13209T0/1-507 GSANFGGGRG GGFGGNDSFG RGGNFSGRAG FGVSLGGGGC GGSGDGYNGF BACU012485/1-232 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000337949/1-479 CVISIDRYLG ITRPLTYPVR QNGKCMAKMI LSVWLLSASI TLPPLFGWAQ ENSBTAP00000011575/1-484 CVISIDRYLG ITRPLTYPVR QNGKCMAKMI LSVWLLSASI TLPPLFGWAQ ENSTTRP00000013945/1-306 --ISIDRYLG ITRPLTYPVR QNGKCMAKMI LSVWLLSASI TLPPLFGWAQ bmy_13209T0/1-507 DLKFVDRYLG ITRPLTYPVR QNGKCMAKMI LSVWLLSASI TLPPLFGWAQ BACU012485/1-232 ---------- ---------- --------MI LSVWLLSASI TLPPLFGWAQ 301 350 ENSP00000337949/1-479 NVNDDKVCLI SQDFGYTIYS TAVAFYIPMS VMLFMYYQIY KAARKSAAKH ENSBTAP00000011575/1-484 NVNDGKVCLI SQDFGYTIYS TAVAFYIPMS VMLFMYYQIY KAARKSAAKH ENSTTRP00000013945/1-306 NVNDDKVCLI SQDFGYTIYS TAVAFYIPMS VMLFMYYQIY KAARKSAAKH bmy_13209T0/1-507 NVNDDKVCLI SQDFGYTIYS TAVAFYIPMS VMLFMYYQIY KAARKSAAKH BACU012485/1-232 NVNDDKVCLI SQDFGYTIYS TAVAFYIPMS VMLFMYYQIY KAARKSAAKH 351 400 ENSP00000337949/1-479 KFPGFPR-VE PDSVIALNGI VKLQKEVEEC ANLSRLLKHE RKNISIFKRE ENSBTAP00000011575/1-484 KFPGFPRPEE PDSVISLNGM VKLQKEVEEC ANLSRLLKHE RKNISIFKRE ENSTTRP00000013945/1-306 KFPGFPRPVE PDSVVSLNGM VKLQKEVEEC ANISRLLKHE RKNISIFKRE bmy_13209T0/1-507 KFPGFPRPEE PDSVVSLNGM VKLQKEVEEC ANLSRFLKHE RKNISIFKRE BACU012485/1-232 KFHGFPRPKE PDSVVSLNGM VKLQKEVEEC ANLSRFLKHE RKNISIFKRE 401 450 ENSP00000337949/1-479 QKAATTLGII VGAFTVCWLP FFLLSTARPF ICGTSCSCIP LWVERTFLWL ENSBTAP00000011575/1-484 QKAATTLGII VGAFTMCWLP FFLLSTARPF ICGIACSCIP LWVERTCLWL ENSTTRP00000013945/1-306 QKAATTLGII VGAFTVCWLP FFLLSTARPF ICGTACSCIP LWVERTFLWL bmy_13209T0/1-507 QKAATTLGII VGAFTVCWLP FFLLSTARPF ICGTACSCIP LWVERTFLWL BACU012485/1-232 QKAATTLGII VGAFTVCWLP FFLLSTARPF ICGTACSCIP LWVERTFLWL 451 500 ENSP00000337949/1-479 GYANSLINPF IYAFFNRDLR TTYRSLLQCQ YRNINRKLSA AGMHEALKLA ENSBTAP00000011575/1-484 GYANSLINPF IYAFFNRDLR TTYRSLLQCQ YRNINRKLSA AGMHEALKLA ENSTTRP00000013945/1-306 GYANSLINPF IYAFFNRDLR TTYRSLLQCQ YRNINRKLSA AGMHEALKLA bmy_13209T0/1-507 GYANSLINPF IYAFFNRDLR TTYRSLLQCQ YRNINRKLSA AGMHEALKLA BACU012485/1-232 GYANSLINPF IYAFFNRDLR TTYRSLLQCQ YRNINRKLSA AGMHEALKLA 501 550 ENSP00000337949/1-479 ERPERPEFVL RACTRRVLLR PEKRPPVSVW VLQSPDHHNW LAD--KMLTT ENSBTAP00000011575/1-484 ERPERPELVL RCCPYTRLLL WEQGPKVPSW VMDNPREGKW VGDQHKTLTT ENSTTRP00000013945/1-306 ERPERPELVL XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX--KTLTT bmy_13209T0/1-507 ERPERPELVL ---------- ---------- ---------- ---------- BACU012485/1-232 ERPERPELVL ---------- ---------- ---------- ---------- 551 600 ENSP00000337949/1-479 VEKKVMIHD- ENSBTAP00000011575/1-484 VEKKVMIHD- ENSTTRP00000013945/1-306 VEKKVMIHDQ bmy_13209T0/1-507 ---------- BACU012485/1-232 ----------