KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:44:04 2014 Check: 00 .. Name: ENSBTAP00000011601/1-564 Len: 724 Check: 1242 Weight: 1.00 Name: ENSTTRP00000011565/1-562 Len: 724 Check: 8407 Weight: 1.00 Name: bmy_07224T0/1-713 Len: 724 Check: 4233 Weight: 1.00 Name: BACU019914/1-577 Len: 724 Check: 1684 Weight: 1.00 // 1 50 ENSBTAP00000011601/1-564 MASHSREPGL LPCGSCDMVF RSWALLATHT QRFCIGRQTR EVMIGAQPPV ENSTTRP00000011565/1-562 MDSHSGELGL LPCGSCDMVF RSWALLATHT QRFCIGRQPR ELTIGEQPPI bmy_07224T0/1-713 MASHSREPGL LPCGSCDMVF RSWALLATHT QRFCIGRQPR ELTVGEQPPI BACU019914/1-577 MASHSREPGL LPCGSCDMVF RSWALLATHT QRFCIGRQPR ELTVGEQPPI 51 100 ENSBTAP00000011601/1-564 ATEPRVPG-- ---------- ---------- ---------- ---------- ENSTTRP00000011565/1-562 ATEPRVPR-- ---------- ---------- ---------- ---------- bmy_07224T0/1-713 ATEPRVPRRI PHPTPCTQVV PQEHQGLPDQ EASKSALKRL TDEITRGSDY BACU019914/1-577 ATEPRVPR-- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000011601/1-564 ---------- --------VV PQEHQGLREQ EAGKSALKRL TE-------- ENSTTRP00000011565/1-562 ---------- --VQRLRLYL QEMRPSITEV PRRPQGPWRR SEAPTQGPNY bmy_07224T0/1-713 RNIEIAGYCY LQVQRLRLYL QEMRPSITEV PSGSQGPWRR SEAPTQGPNY BACU019914/1-577 ---------- --VQRLWLYL QEMRPSITEV PSGSQGPWRR SEAPTQGPNY 151 200 ENSBTAP00000011601/1-564 EAAGSLGERL LALHWTHARR VAETAAQSWA LEQRSEELSR RLQGLAWTGN ENSTTRP00000011565/1-562 ETAGSPGERL RALHRTHARL LAETKAQSCA LERRGEELSR HLQGLAWTRD bmy_07224T0/1-713 EAAGSPGERL RALHRTRARR LAETKAQSCA LERRGEELSR HLQGLAWTRD BACU019914/1-577 EAAGSPGERL RALHRTRARR LAETKAQSCV LERRGEELSR HLQGLAWTRD 201 250 ENSBTAP00000011601/1-564 GKSRIFSLER ELRELRAEAG RTRGALEKLG AHVQQLQANP VTRLNTVREA ENSTTRP00000011565/1-562 GKSRIFSLER ELRELRAEAG RTRGALEELG AHVQQLQANP GTRLNALREA bmy_07224T0/1-713 GKSRIFSLER ELRELRAEAG RTRGALEELG AHVQQLQANP GTRLNALREA BACU019914/1-577 GKSRIFSLER ELRELRAEAG RTRGALEELG AHVQQLQANP GTRLNAVREA 251 300 ENSBTAP00000011601/1-564 ELCGPVLQAT PGTLPAEIGA LREAYIRGGG QDPGVLGWMW QLQAEASALE ENSTTRP00000011565/1-562 ELCGPVLQAN PGTLAAEIGA LREAYIRGGG RDTGVLGWIW QLQVEASALE bmy_07224T0/1-713 ELCGPVLQAN PGTLAAEIGA LREAYIRGGG RDTGVLGWIW QLQVEASALE BACU019914/1-577 ELCGPVLQAN PGTLAAEIGA LREAYIRGGG RDTGVLGWIW QLQVEASALE 301 350 ENSBTAP00000011601/1-564 LRRSRTRRGG RAGAAFKELL AVEAENRRLE AEILALQMQR GAGQTPWGQG ENSTTRP00000011565/1-562 LRRSRTRRGR QAGAAFKELL AVEAENRRLE AEILALQMQR GAGRVPWGHR bmy_07224T0/1-713 LRRSRTRRGR QAGAAFKELL AVEAENRRLE AEILALQTQR GAGRVPWGHG BACU019914/1-577 LRRSRTRRGR QAGAAFKELL AVEAENRHLE AEILALQTQR GAGRVPWGHE 351 400 ENSBTAP00000011601/1-564 EPRLGANPSP RL-RREDPPS LPPPVAPQLP P---STRVLF LGGAEK---- ENSTTRP00000011565/1-562 EPRLVANPSP RLRRREDPPS LPPPVAPPLP LLPHSTG--- ---------- bmy_07224T0/1-713 EPRLVVNPSP RLRRREDPPR LPPPVAPPLP PLPHSTGILF LGGAEKA--- BACU019914/1-577 EPRLVVNPSP RL-RREDPPR LPPPVAPPLP PLPHSTGILF LGGFLEELTL 401 450 ENSBTAP00000011601/1-564 ---AVRTGAM TRNPARDPHY LLPTTDVLGP APYNPGAGFV IFYDFLRGLE ENSTTRP00000011565/1-562 ---SQLPGTM TRNMGLDPHF LLPTTDVLGP APYDPGAGLV IFYDFLRGLE bmy_07224T0/1-713 ---SQLSGTM TRNLGLDPHF LLPTTDVLGP APYDPGAGLV IFYDFLRGLE BACU019914/1-577 PLQSQLSGTM TRNLGLDPHF LLPTTDVLGP APYDPGAGLV IFYDFLRGLE 451 500 ENSBTAP00000011601/1-564 ASWVWVQLMT GLARDGRESG GTTALPPALC LPPPPAPGPM GNCAILASKQ ENSTTRP00000011565/1-562 ASWIWVQLLT GLARDGQDTG GTTALPPALC LPPPPAPGPM GNCAILASRQ bmy_07224T0/1-713 ASWIWVQLMT GLARDGQDTG GTTALPPALC LPPPPAPGPM GNCAILASRQ BACU019914/1-577 ASWIWVQLMT GLARDGQDTG GTTALPLALC LPPPPAPGPM GNCAILASRQ 501 550 ENSBTAP00000011601/1-564 PVPRLPPSPS VALVCELRAW QGLAWAKAPQ PKAWASLVLF DQNQRLLSGR ENSTTRP00000011565/1-562 PIPRLPPSPS VSLVCELQAW QGLAWAKAPL PKAWASLVLF DRDQRVLSGR bmy_07224T0/1-713 PIPRLPPSPS VSLVCELQAW QGLAWAKAPQ AKAWASLVLF DRDQRVLSGR BACU019914/1-577 PIPRLPPSPS VSLVCELQAW QGLAWAKAPQ PKAWASLVLF DRDQRVLSGR 551 600 ENSBTAP00000011601/1-564 WRLPFRALPP DPSLSPGHLS PGQLNRIPQG NQAELFLRLV NARDAGVQTL ENSTTRP00000011565/1-562 WRLPLQTLPL DPS-----LS FGQLNGIPQV GQAELFLRLV NARDADVQTL bmy_07224T0/1-713 WRLPLRTLPL DPS-----LS LGQLNGIPQV GQAELFLRLV NARDADVQTL BACU019914/1-577 WRLPLRTLPL DPS-----LS LGQLNGIPQV GQAELFLRLV NARDADVQTL 601 650 ENSBTAP00000011601/1-564 AEINPANAHE YQYPP---LV PNS------- ---------- --SSPEASPL ENSTTRP00000011565/1-562 AEINPASAHE YQYPP---LV RAQLL----- ---------- --GPPQVWLM bmy_07224T0/1-713 AEINPASAHE YHILPPTSLS KSKLLQDIVQ EAFQVLKLTM KQGAPVADRI BACU019914/1-577 AEINPASAHE YQYPP---LV RAQLL----- ---------- --GTPQVWLI 651 700 ENSBTAP00000011601/1-564 T--------- ---------- ---------- ---------- -PTTAFVDPP ENSTTRP00000011565/1-562 W--------- ---------- ---------- ---------- -LITSIC--- bmy_07224T0/1-713 MAPVGDKVAA PSAPQFLSHI QFAELCHCFI ILRVVPIGQA QLVVGLCKEP BACU019914/1-577 W--------- ---------- ---------- ---------- -LITSIC--- 701 750 ENSBTAP00000011601/1-564 PPEDA----- ---------- ---- ENSTTRP00000011565/1-562 ---------- ---------- ---- bmy_07224T0/1-713 IMGFQGYREP KRWQEMEVLR ENLF BACU019914/1-577 ---------- ---------- ----