KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:06 2014 Check: 00 .. Name: ENSBTAP00000011608/1-1317 Len: 1605 Check: 7964 Weight: 1.00 Name: ENSTTRP00000016062/1-1246 Len: 1605 Check: 6763 Weight: 1.00 Name: ENSP00000406367/1-1338 Len: 1605 Check: 6576 Weight: 1.00 Name: BACU003048/1-1289 Len: 1605 Check: 5540 Weight: 1.00 Name: bmy_14643T0/1-1250 Len: 1605 Check: 7123 Weight: 1.00 // 1 50 ENSBTAP00000011608/1-1317 MGAAGRRMRG APARLLLPLL LPWLLLLTPE TRGAPGCPVP IRSCKCSGER ENSTTRP00000016062/1-1246 ---------- ---------- ---------- ---------L LSNNKITGLR ENSP00000406367/1-1338 MGAGGRRMRG APARLLLPLL PWLLLLLAPE ARGAPGCPLS IRSCKCSGER BACU003048/1-1289 ---------- ---------- -------APE IRGTPGCPVP IRSCKCSGER bmy_14643T0/1-1250 ---------- ---------- ---------- --------RL LSNNKITGLR 51 100 ENSBTAP00000011608/1-1317 PKGLSGGAPN PARRRVVCGG GDLPEPPDPG LLPNSTVTLL IRGNPVNRAA ENSTTRP00000016062/1-1246 NGSFLG---L PLLEKLDLRN NVISTVQAGA FLGLGELK-- ---------- ENSP00000406367/1-1338 PKGLSGGVPG PARRRVVCSG GDLPEPPEPG LLPNGTVTLL LSNNKITGLR BACU003048/1-1289 PKGLSGGAPS PARRRVVCGG GDLPEPPEPG LLPNSTVT-- ---------- bmy_14643T0/1-1250 NGSFLG---L PLLEKLDLRN NVISTVQAGA FLGLGELK-- ---------- 101 150 ENSBTAP00000011608/1-1317 HLRFLGAPM- ---------- ---------- ---DTKADLE NPVPSQQDPG ENSTTRP00000016062/1-1246 ---------- ---------- ---------- -----RLDLS N-----NRIG ENSP00000406367/1-1338 NGSFLGLSLL EKLDLRNNII STVQPGAFLG LGELKRLDLS N-----NRIG BACU003048/1-1289 ---------- ---------- ---------- ------LLLS N-----NKIT bmy_14643T0/1-1250 ---------- ---------- ---------- -----RLDLS N-----NRIG 151 200 ENSBTAP00000011608/1-1317 PFDLGTFQGW VGMGGRHGTG TGPRVSSQKH QADSRALHAS LGSPLWAGL- ENSTTRP00000016062/1-1246 CLTSETFQGL ---------- ---------- ---PRLLRLN ISGNIFSSLP ENSP00000406367/1-1338 CLTSETFQGL ---------- ---------- ---PRLLRLN ISGNIFSSLQ BACU003048/1-1289 GLRNGSFLGL ---------- ---------- ---PLLEKLN ISGNIFSSLP bmy_14643T0/1-1250 CLTSETFQGL ---------- ---------- ---PRLLRLN ISGNIFSSLP 201 250 ENSBTAP00000011608/1-1317 SGVWEVLVSL RISPKGTGEK VPATSELISI LPFRQASPGQ PCSHTDQSEP ENSTTRP00000016062/1-1246 PGVFDELPAL KVVDLGT-EF LTCDCRLRWL LSWARNRSVQ LSERTLCAYP ENSP00000406367/1-1338 PGVFDELPAL KVVDLGT-EF LTCDCHLRWL LPWAQNRSLQ LSEHTLCAYP BACU003048/1-1289 PGVFDELPAL KVVDLGT-EF LTCDCRLRWL LSWARNRSVQ LSERTLCAYP bmy_14643T0/1-1250 PGVFDELPAL KVVDLGT-EF LTCDCRLRWL LSWARNRSVQ LSERTLCAYP 251 300 ENSBTAP00000011608/1-1317 SSLGA---GS LLIAQMQCPC REGSLHVAGH GPLKPGEKRP HQGDLLTSRC ENSTTRP00000016062/1-1246 SALHAQTLGG LQEAQLRC-- -EGALELHTH HLIPSLRQVV FQGDRLPFQC ENSP00000406367/1-1338 SALHAQALGS LQEAQLCC-- -EGALELHTH HLIPSLRQVV FQGDRLPFQC BACU003048/1-1289 SALHAQALGG LQEAQLRC-- -EGALELHTH HLIPSLRQVV FQGDRLPFQC bmy_14643T0/1-1250 SALHAQALGG LQEAQLRC-- -EGALELHTH HLIPSLRQVV FQGDRLPFQC 301 350 ENSBTAP00000011608/1-1317 SGLTGQSSSQ GRGVRGERSH IDGYE-PGAL LASASRPPCS PRVRPLRCRH ENSTTRP00000016062/1-1246 SASYLGNDTH VRWYH-NRAP VEGDEQAGIL LGDSLIHDCT FITSELTLSH ENSP00000406367/1-1338 SASYLGNDTR IRWYH-NRAP VEGDEQAGIL LAESLIHDCT FITSELTLSH BACU003048/1-1289 SASYLGNDTH VRWYH-NRAP VEGDEQAGIL LGDSLIHDCT FITSELTLSH bmy_14643T0/1-1250 SASYLGNDTH VRWYH-NRAP VEGDEQAGIL LGDSLIHDCT FITSELTLSH 351 400 ENSBTAP00000011608/1-1317 VLAPRPTEWG LR-DPYKGHL GCQAGIWLLR PKDPILATWG LNHNGISDVF ENSTTRP00000016062/1-1246 IGVWASGEWE CSVSTVQGNA SKKVEIVVLE TSASYCPAER VANNRGDFRW ENSP00000406367/1-1338 IGVWASGEWE CTVSMAQGNA SKKVEIVVLE TSASYCPAER VANNRGDFRW BACU003048/1-1289 IGVWASGEWE CSVSTVQGNA SKKVEIVVLE TSASYCPAER VANNRGDFRW bmy_14643T0/1-1250 IGVWASGEWE CSVSTVQGNA SKKVEIVVLE TSASYCPAER VANNRGDFRW 401 450 ENSBTAP00000011608/1-1317 PRT--GDVAR EGPLEGPDFL VGGGAGYKQT RSGMRGQCFS NWDPQ----- ENSTTRP00000016062/1-1246 PRTLAGITAY QSCLQYPFTS VPLSGGAPGT RASRRCDRAG RWEPGDYSHC ENSP00000406367/1-1338 PRTLAGITAY QSCLQYPFTS VPLGGGAPGT RASRRCDRAG RWEPGDYSHC BACU003048/1-1289 PRTLAGITAY QSCLQYPFTS VPLSGAAPGT RASRRCDRAG RWEPGDYSHC bmy_14643T0/1-1250 PRTLAGITAY QSCLQYPFTS VPLSGGAPGT RASRRCDRAG RWEPGDYSHC 451 500 ENSBTAP00000011608/1-1317 IYLQEIKQLS APFNSQPPQV MGNKTIWNKN KT-------- ---------- ENSTTRP00000016062/1-1246 LYTNDITRVL YTFVLMPINA SNALTLAHQL RV-------- ---------- ENSP00000406367/1-1338 LYTNDITRVL YTFVLMPINA SNALTLAHQL RV-------- ---------- BACU003048/1-1289 LYTNDITRVL YTFVLMPINA SNALTLAHQL RVYTAEAASF SDMMDVVYVA bmy_14643T0/1-1250 LYTNDITRVL YTFVLMPINA SNALTLAHQL RV-------- ---------- 501 550 ENSBTAP00000011608/1-1317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016062/1-1246 ---------- ---------- ---------- ---------- ---------- ENSP00000406367/1-1338 ---------- ---------- ---------- ---------- ---------- BACU003048/1-1289 QMIQKFLGYV DQIKELVEVM VDMASNLMLV DEHLLWLAQR EDKACSGIVG bmy_14643T0/1-1250 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000011608/1-1317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016062/1-1246 ---------- ---------- ---------- ---------- ---------- ENSP00000406367/1-1338 ---------- ---------- ---------- ---------- ---------- BACU003048/1-1289 ALERIGGAAL SAHAQHISVV RELTLSHIGV WASGEWECSV STVQGNASKK bmy_14643T0/1-1250 ---------- ---------- ---------- ---------- ---------- 601 650 ENSBTAP00000011608/1-1317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016062/1-1246 ---------- ---------- ---------- ---------- ---------- ENSP00000406367/1-1338 ---------- ---------- ---------- ---------- ---------- BACU003048/1-1289 VEIVVLETSA SYCPAERVAN NRGDFRWPRT LAGITAYQSC LQYPFTSVPL bmy_14643T0/1-1250 ---------- ---------- ---------- ---------- ---------- 651 700 ENSBTAP00000011608/1-1317 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016062/1-1246 ---------- ---------- ---------- ---------- ---------- ENSP00000406367/1-1338 ---------- ---------- ---------- ---------- ---------- BACU003048/1-1289 SGAAPGTRAS RRCDRAGRWE PGDYSHCLYT NDITRVLYTL VLMPINASNA bmy_14643T0/1-1250 ---------- ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000011608/1-1317 ---------H KMIIKGFKKV LS-IHMMTTV MCFLKYQG-- ---VCVCVKH ENSTTRP00000016062/1-1246 ---------Y TAEAASFSDM MDVVYVAQMI QKFLGYVDQI KELVEVMVDM ENSP00000406367/1-1338 ---------Y TAEAASFSDM MDVVYVAQMI QKFLGYVDQI KELVEVMVDM BACU003048/1-1289 LTLAHQLRVY TAEAASFSDM MDVVYVAQMI QKFLGYVDQI KELVEVMVDM bmy_14643T0/1-1250 ---------Y TAEAASFSDM MDVVYVAQMI QKFLGYVDQI KELVEVMVDM 751 800 ENSBTAP00000011608/1-1317 FGNIALPRNP STWSLWMMRW RDSEAGS--- ---RRGGGGL SAERRKQAIN ENSTTRP00000016062/1-1246 ASNLML---V DEHLLWLAQR EDKACSGIVG ALERIGGAAL SAHAQHISVN ENSP00000406367/1-1338 ASNLML---V DEHLLWLAQR EDKACSRIVG ALERIGGAAL SPHAQHISVN BACU003048/1-1289 ASNLML---V DEHLLWLAQR EDKACSGIVG ALERIGGAAL SAHAQHISVN bmy_14643T0/1-1250 ASNLML---V DEHLLWLAQR EDKACSGIVG TLERIGGAAL SAHAQHISVN 801 850 ENSBTAP00000011608/1-1317 SRDEPFD-WL RDAQALCSSE LGAFEGREGG VPFWR-GGPG RKPPPPPSPV ENSTTRP00000016062/1-1246 SRNVALEAYL IKPHSYVGLT CTAFQRREAG APGTRPLGPG QNPSPEPEPL ENSP00000406367/1-1338 ARNVALEAYL IKPHSYVGLT CTAFQRREGG VPGTRPGSPG QNPPPEPEPP BACU003048/1-1289 SRNVALEAYL IKPHSYVGLT CTAFQRREAG APGTRPLGPG QNPSPEPEPL bmy_14643T0/1-1250 SRNVALEAYL IKPHSYVGLT CTAFQRREAG APGTRPLGAS QNPSPEPEPL 851 900 ENSBTAP00000011608/1-1317 KPWRQAENSG TGAGVMTKCP CHVRNHLVVR SVWAIPTVFQ EKEKISKSPV ENSTTRP00000016062/1-1246 ADQQLRFRCT TGRPN-SLSS FHIKNSVALA SIQLPPSLFS SLPAALAPPA ENSP00000406367/1-1338 ADQQLRFRCT TGRPNVSLSS FHIKNSVALA SIQLPPSLFS SLPAALAPPV BACU003048/1-1289 ADQQLRFRCT TGRPNVSLSS FHIKNSVALA SIQLPPSLFS SLPAALAPPV bmy_14643T0/1-1250 ADQQLRFRCT TGRPNVSLSS FHIKNSVALA SIQLPPSLFS SLPAALAPPV 901 950 ENSBTAP00000011608/1-1317 TRPPGLSEEE LVVKSKKLFP SGSFTSHGQA ASPV---GVI SPPVREGPLG ENSTTRP00000016062/1-1246 --PPDCTLQL LVFRNGRLFR SHGNTSRPGA AGLGKRRGVA TPVISAGTSG ENSP00000406367/1-1338 --PPDCTLQL LVFRNGRLFH SHSNTSRPGA AGPGKRRGVA TPVIFAGTSG BACU003048/1-1289 --PPDCTLQL LVFRNGRLFR SHGNTSRPGA AGLGKRRGVA TPVISAGTSG bmy_14643T0/1-1250 --PPDCTLQL LVFRNGRLFR SHGNTSRPGA AGLGKRRGVA TPVISAGTSG 951 1000 ENSBTAP00000011608/1-1317 EGTXNLTEPV AVSLRHWAEG AEPM-AWWSQ EGPGGPGGWR SEGCQLRSSQ ENSTTRP00000016062/1-1246 CSVGNLTEPV AVSLRHWAEG AEPVAAWWSQ EGPGGPEGWS SEGCQLRSSQ ENSP00000406367/1-1338 CGVGNLTEPV AVSLRHWAEG AEPVAAWWSQ EGPGEAGGWT SEGCQLRSSQ BACU003048/1-1289 CSVGNLTEPV AVSLRHWAEG AEPVAAWWSQ EGPGGPGGWS SEGCQLRSSQ bmy_14643T0/1-1250 CSVGNLTEPV AVSLRHWAEG AEPVAAWWSQ EGPGGPGGWS SEGCQLRSSQ 1001 1050 ENSBTAP00000011608/1-1317 PNVSSLHCQH LGNVAVLMEL SAFPREAGGS GAGLHPVVYP CTALLLLCLF ENSTTRP00000016062/1-1246 PHVSSLQCQH LGNVAVLMEL RAFPREVEGS GAGLHPVVYP CTALLLLCLF ENSP00000406367/1-1338 PNVSALHCQH LGNVAVLMEL SAFPREVGGA GAGLHPVVYP CTALLLLCLF BACU003048/1-1289 PNVSALQCQH LGNVAVLMEL SAFPREVEGS GAGLHPVVYP CTALLLLCLF bmy_14643T0/1-1250 PNVSALQCQH LGNVAVLMEL SAFPREVEGS GAGLHPVVYP CTALLLLCLF 1051 1100 ENSBTAP00000011608/1-1317 STIITYILNH SSIHVSRKGW HMLLNLCFHM AMTSAVFAGG ITLTNYQMVC ENSTTRP00000016062/1-1246 STIITYILHH SSIHVSRKGW HMLLNLCFHM AMTSAVFAGG ITLTNYQMVC ENSP00000406367/1-1338 ATIITYILNH SSIRVSRKGW HMLLNLCFHI AMTSAVFAGG ITLTNYQMVC BACU003048/1-1289 STIITYILHH SSIHVSRKGW HMLLNLCFHM AMTSAAFAGG ITLTNYQVVC bmy_14643T0/1-1250 STIITYILHH SSIHVSRKGW HMLLNLCFHM AMTSAVFAGG ITLTNYQMVC 1101 1150 ENSBTAP00000011608/1-1317 QAVGITLHYS SLSTLLWMGV KARVLHKELT WRAPPPPEGD AAPPAPRPML ENSTTRP00000016062/1-1246 QAVGITLHYS SLSTLLWMGV KARVLHKELT WRAPPPQEGD AALPAPRPML ENSP00000406367/1-1338 QAVGITLHYS SLSTLLWMGV KARVLHKELT WRAPPPQEGD PALPTPSPML BACU003048/1-1289 QAVGITLHYS SLSTLLWMGV KARVLHKELT WRAPPPQEGD AALPAPRPML bmy_14643T0/1-1250 QAVGITLHYS SLSTLLWMGV KARVLHKELT WRAPPPQEGD AALPAPRPML 1151 1200 ENSBTAP00000011608/1-1317 RFYLIAGGIP LIICGITAAV NIHNYLDHSP YCWLVWRPSL GAFYIPVALI ENSTTRP00000016062/1-1246 RFYLIAGGIP LIICGITAAV NIHNYRDHSP YCWLVWRPSL GAFYIPVALI ENSP00000406367/1-1338 RFYLIAGGIP LIICGITAAV NIHNYRDHSP YCWLVWRPSL GAFYIPVALI BACU003048/1-1289 RFYLIAGGIP LIICGITAAV NIHNYRDHSP HCWLVWRPSL GAFYIPVALI bmy_14643T0/1-1250 RFYLIAGGIP LIICGITAAV NIHNYRDHSP YCWLVWRPSL GAFYIPVALI 1201 1250 ENSBTAP00000011608/1-1317 LLITWIYFLC AGLRLRGPLA QSPKGVTGRV SLEPGEELRG STRLRSSGPL ENSTTRP00000016062/1-1246 LLITWIYFLC AALRLRGPPA QSPKGGXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000406367/1-1338 LLITWIYFLC AGLRLRGPLA QNPKAGNSRA SLEAGEELRG STRLRGSGPL BACU003048/1-1289 LLITWIYFLC AGLRLRGPLA QSPKGGTSRV SLEPGEELRG STRLRSSGPL bmy_14643T0/1-1250 LLITWIYFLC AGLRLRGPLA QSPKGGTSRV SLEPGEELRG STRLRSSGPL 1251 1300 ENSBTAP00000011608/1-1317 LSDSGSLLAA GSTGVVTPGP PEDGDGLYSP GVQLGALVTT HFLYLATWAC ENSTTRP00000016062/1-1246 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000406367/1-1338 LSDSGSLLAT GSARVGTPGP PEDGDSLYSP GVQLGALVTT HFLYLAMWAC BACU003048/1-1289 LSDSGSLLAA GSTGVVTPGP PEEGDGLYSP GVQLGALVTT HFLYLAMWAC bmy_14643T0/1-1250 LSDSGSLLAA GSAGVVTPGP PEEGDGLYSP GVQLGALVTT HFLYLAMWAC 1301 1350 ENSBTAP00000011608/1-1317 GALTVSQRWL PRVVCSCLYG VAASALGLFV FTHHCARRRD VRASWRACRP ENSTTRP00000016062/1-1246 XXXXXXXXXX PRVVCSCLYG VAASALCLFV FTHHCARRRD VRASWRACRP ENSP00000406367/1-1338 GALAVSQRWL PRVVCSCLYG VAASALGLFV FTHHCARRRD VRASWRACCP BACU003048/1-1289 GALSVSQRWL PRVVCSCLYG VAASALGLFV FTHHCARRRD VRASWRACRP bmy_14643T0/1-1250 GALSVSQRWL PRVVCSCLYG VAASALGLFV FTHHCARRRD VRASWRACRP 1351 1400 ENSBTAP00000011608/1-1317 PAS--GSRAS PRAAPAGPED GSPVFGEGPP SLKSSPSGSS GHAQPPGPCK ENSTTRP00000016062/1-1246 PAS--ASRAS PRAAPAAPED GSPAFGEGPA SLKSSPSGSS GPAPPPGPCK ENSP00000406367/1-1338 PASPAAPHAP PRALPAAAED GSPVFGEGPP SLKSSPSGSS GHPLALGPCK BACU003048/1-1289 PAS--ASHIL PVFL------ GVPSISLGIK VPHHRLAGT- ---LVVGTCK bmy_14643T0/1-1250 PAS--ASRAS PRAAPTAPED GSPSFGEGPA SLKSSPSGSS GPAPPPGPCK 1401 1450 ENSBTAP00000011608/1-1317 LTNLQLAQSQ ACEAGAAARG DGEPELPGPR AGLGPRHPNN LHHGRRGHKS ENSTTRP00000016062/1-1246 LTNLQLAQSQ ACEAGVAARG EAEPETPGPR GSLGPRHPNN SHHGRRGHKS ENSP00000406367/1-1338 LTNLQLAQSQ VCEAGAAAGG EGEPEPAGTR GNLAHRHPNN VHHGRRAHKS BACU003048/1-1289 LCIF------ ---------- ---------- ---------- ---------- bmy_14643T0/1-1250 LTNLQLAQSQ ACEAGAAARG EGEPETPGPR GSLGPRHPNN SHHGRRGHKS 1451 1500 ENSBTAP00000011608/1-1317 RAKGHRAGEA GGKNRLRAL- GGAAGTAELQ SSESGSPHHS PSESYLGSSR ENSTTRP00000016062/1-1246 RAKGHRAGEA GGRNRLRAPR GGAAGAAELP SGESGSPHNS SSDSYPGSSR ENSP00000406367/1-1338 RAKGHRAGEA CGKNRLKALR GGAAGALELL SSESGSLHNS PTDSYLGSSR BACU003048/1-1289 ---------- ---------- ---------- ------PHSH L--------- bmy_14643T0/1-1250 RAKGHRAGEA CGRNRLRAPR GGAAGAAELP SGESGSPHNS PSDSYPGSSR 1501 1550 ENSBTAP00000011608/1-1317 HSPGVGPRLE GEAALTPSEG SDTSAAPPPE AGRPSQRRSA SRDNLR---G ENSTTRP00000016062/1-1246 NSSGAGPRLE GESTLTPSEG SDTSAAPLPE AGWSGQRRGA GRDYFGGG-G ENSP00000406367/1-1338 NSPGAGLQLE GEPMLTPSEG SDTSAAPLSE AGRAGQRRSA SRDSLKG--G BACU003048/1-1289 ---------- -DSILT---- ---------- ---------- ---------- bmy_14643T0/1-1250 NSPGAGPRLE GESTLTPSEG SDTSAAPLPE AGRPGQRRSA GRDHLKGGVG 1551 1600 ENSBTAP00000011608/1-1317 GVLEKESKRR SYPLNSASLN GAPKGGKYDD VPSSGAEAAG GGCMKTGLWK ENSTTRP00000016062/1-1246 GALD-ESQRP SYPLNAASLN GAPKGGKYDD VTLSGAEAAG GGCMKTGLWK ENSP00000406367/1-1338 GALEKESHRR SYPLNAASLN GAPKGGKYDD VTLMGAEVAS GGCMKTGLWK BACU003048/1-1289 ---------- ---------- ---------- ---------- ---------- bmy_14643T0/1-1250 GALEKESQRR SYPLNAASLN GAPKGGKYDD VTLSGAEAAG GGCMKTGLWK 1601 1650 ENSBTAP00000011608/1-1317 SETTV ENSTTRP00000016062/1-1246 SETTV ENSP00000406367/1-1338 SETTV BACU003048/1-1289 ----- bmy_14643T0/1-1250 SETTV