KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:13 2014 Check: 00 .. Name: ENSP00000411250/1-966 Len: 1018 Check: 6929 Weight: 1.00 Name: ENSBTAP00000011617/1-986 Len: 1018 Check: 6108 Weight: 1.00 Name: ENSTTRP00000011140/1-478 Len: 1018 Check: 4425 Weight: 1.00 Name: bmy_21176T0/1-874 Len: 1018 Check: 3079 Weight: 1.00 Name: BACU007114/1-1010 Len: 1018 Check: 4003 Weight: 1.00 // 1 50 ENSP00000411250/1-966 MEPQVTLNVT FKNEIQSFLV SDPENTTWAD IEAMVKVSFD LNTIQIKYLD ENSBTAP00000011617/1-986 MEPQVTLNVT FKNETQSFLV SDPENTTWAD VEAMVKVSFD LNTVQIKYLD ENSTTRP00000011140/1-478 MEPQVTLNVT FKNETQSFLV SDPENTTWAD VEAMVKVSFD LNTIQIKYLA bmy_21176T0/1-874 MEPQVTLNVT FKNETQSFLV SDPENTTWAD VEAMVKVSFD LNTIQIKYLD BACU007114/1-1010 MEPQVTLNVT FKNETQSFLV SDPENTTWAD VEAMVKVSFD LNTIQIKYLD 51 100 ENSP00000411250/1-966 EENEEVSINS QGEYEEALKM AVKQGNQLQM QVHEGHHVVD EAPPPVVGAK ENSBTAP00000011617/1-986 EENEEVSINS QGEYEEALKM AVKQGNQLQM QVHEGCRVGE EAPPPTGTEK ENSTTRP00000011140/1-478 EENEEVKIVL LGEYEEALKM AVKQGNQLQM QVHEGYRVVY EAPPPVGAEK bmy_21176T0/1-874 EENEEVSINS QGEYEEALKM AVKQGNQLQM QVHEGYRVVY EAPPPVGGEK BACU007114/1-1010 EENEEVSINS QGEYEEALKM AVKQGNQLQM QVHEGYRVVY EAPPPVGAEK 101 150 ENSP00000411250/1-966 RLAARAGKKP LAHYSSLVRV LGSDMKTPED PAVQSFPLVP CDTDQPQDKP ENSBTAP00000011617/1-986 RLVARTGKKP LAHYSSVVRV LGSDMKTPED PATQQLPPAP HNPDQPQDKP ENSTTRP00000011140/1-478 RPVARTGKKP LAHYSSLVRV LGSDMKTPEE PAAQQFPPAP RDADQPQDKP bmy_21176T0/1-874 RPVARTGKKP LAHYSSLVRV LGSDMKTPEE PAAQQFPPAP CDADQPQDKP BACU007114/1-1010 RPVARTGKKP LAHYSSLVRV LGSDMKTPEE PAAQQFPPAP CDADQPQDKP 151 200 ENSP00000411250/1-966 PDWFTSYLET FREQVVNETV EKLEQKLHEK LVLQNPSLGS CPSEVSMPTS ENSBTAP00000011617/1-986 PDWFTSYLET FREQVVKETV EKLEQKLHEK LVLQHPSLGS CPSEVSMPVS ENSTTRP00000011140/1-478 PDWFTSSLET FREQVVKETV EKLEQKLREK LILQNPSLGS CPSEVSMPIS bmy_21176T0/1-874 PDWFTSYLET FREQVVKETV EKLEQKLREK LILQNPSLGS RPSEVSMPIS BACU007114/1-1010 PDWFTSYLET FREQVVKETV EKLEQKLREK LILQNPSLGS RPSEVSMPIS 201 250 ENSP00000411250/1-966 EETLFLPENQ FSWHIACNNC QRRIVGVRYQ CSLCPSYNIC EDCEAGPYGH ENSBTAP00000011617/1-986 EETLFLPENQ FSWHIACSSC QRSIVGVRYQ CSLCPSYNIC EDCESGPYAH ENSTTRP00000011140/1-478 EETLFLPENQ FNWHIACSSC QRRIVGVRYQ CSLCPSYNIC EDCESGPYAH bmy_21176T0/1-874 EETLFLPENQ FNWHIACGSC QRRIVGVRYQ C--------- ---------- BACU007114/1-1010 EETLFLPENQ FNWHIACGSC QRRIVGVRYQ CSLCPSYNIC EDCESGPYAH 251 300 ENSP00000411250/1-966 DTNHVLLKLR RPVVGSSEPF CHSKYSTPRL PAALEQVRLQ KQVDKNFLKA ENSBTAP00000011617/1-986 DSNHVLLKLR RPVVGSSEPF SHSRFSTPRL PAALEQARLQ KQVDKNFLKA ENSTTRP00000011140/1-478 DSNHVLLKLR RPVVGSSEPF SHSRFSTPRL PAALEQARLQ KQVDKNFLKA bmy_21176T0/1-874 ---------- ---------- ---------- -------RLQ KQVDKNFLKA BACU007114/1-1010 DSNHVLLKLR RPVVGSSEPF SHSRFSTPRL PAALEQARLQ KQVDKNFLKA 301 350 ENSP00000411250/1-966 EKQRLRAEKK QRKAEVKELK KQLKLHRKIH LWNSIHGLQS PKSPLGRPES ENSBTAP00000011617/1-986 EKQRLRAEKK QRKAEVKELK KQLKLHRKIH LWNSLHGLQN PKSPLGRPES ENSTTRP00000011140/1-478 EKQRLRAEKK QRKAEVKELK KQLKLHRKIH LWNSIHGLQS PKSPLGRPES bmy_21176T0/1-874 EKQRLRAEKK QRKAEVKELK KQLKLHRKIH LWNSIHGLQS PKSPLGRPES BACU007114/1-1010 EKQRLRAEKK QRKAEVKELK KQLKLHRKIH LWNSIHGLQS PKSPLGRPES 351 400 ENSP00000411250/1-966 LLQSNTLMLP LQPCTSVMPM LSAAFVDENL PDGTHLQPGT KFIKHWRMKN ENSBTAP00000011617/1-986 LLQSNTPMLP LQPCAPVMPT LSAAFVDENL PDGTHLQPGT KFIKHWRMKN ENSTTRP00000011140/1-478 LLQSNTPMLP LQPCASVMPT LSAAFVDENL PDGTHLQPGT KFIKHWRMKN bmy_21176T0/1-874 LLQSNTPMLP LQPCASVMPT LSAAFVDENL PDGTHLQPGT KFIKHWRMKN BACU007114/1-1010 LLQSNTPMLP LQPCASVMPT LSAAFVDENL PDGTHLQPGT KFIKHWRMKN 401 450 ENSP00000411250/1-966 TGNVKWSADT KLKFMWGNLT LASTEKKDVL VPCLKAGHVG VVSVEFIAPA ENSBTAP00000011617/1-986 TGNVKWSTDT KLKFMWGNLT LASTEKKDVL VPCLKAGHVG VVSVEFIAPT ENSTTRP00000011140/1-478 TGNVKWSTDT KLKFMWGNLT LASTEKKDVL VPCLKAGHVG VVSVEFIAPT bmy_21176T0/1-874 TGNVKWSTDT KLKFMWGNLT LASTEKKDVL VPCLKAGHVG VVSVEFIAPT BACU007114/1-1010 TGNVKWSTDT KLKFMWGNLT LASTEKKDVL VPCLKAGHVG VVSVEFIAPT 451 500 ENSP00000411250/1-966 LEGTYTSHWR LSHKGQQFGP RVWCSIIVDP FPSEESPDNI EKGMISSSKT ENSBTAP00000011617/1-986 LEGTYTSHWR LSHKGQQFGP RVWCSIIVDP FPSTESPDNS EKSMISSSRG ENSTTRP00000011140/1-478 LEGTYTSHWR LSHKGQQFGP RVWCSIIV-- ---------- ---------- bmy_21176T0/1-874 LEGTYTSHWR LSHKGQQFGP RVWCSIIVDP FPSTESPDNA EKSMISSSKG BACU007114/1-1010 LEGTYTSHWR LSHKGQQFGP RVWCSIIVDP FPSTESPDNV EKSMISSSKG 501 550 ENSP00000411250/1-966 DDLTCQQEET FLLAKEERQL GEVTEQTEGT AACIPQKAKN VASERELYIP ENSBTAP00000011617/1-986 DELPCQQEEA FL-AKEEILP GETTEQTEGP GTRIPQKAKN APSKRELYIP ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 DDLTCQQEEA LLPAKEEIPP XETPEQTEGT GTCIPQKAKN AASERELYIP BACU007114/1-1010 DDLTCQQEEA LLPAKEEIPP GETTEQTEGT GTCIPQKAKN AASERELYIP 551 600 ENSP00000411250/1-966 SVDLLTAQDL LSFELLDINI VQELERVPHN TPVDVTPCMS PLPHDSPLIE ENSBTAP00000011617/1-986 SVDLLTAQDL LSFELLDINI VQELERVPHN TPVDMTPCMS PLPHDSPLIE ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 SVDLLTAQDL LSFELLDINI VQELERVPHN TPVDMTPCMS PLPHDSPLIE BACU007114/1-1010 SVDLLTAQDL LSFELLDINI VQELERVPHN TPVDMTPCMS PLPHDSPLIE 601 650 ENSP00000411250/1-966 KPGLGQIEEE NEGAGFKALP DSMVSVKRKA ENIASVEEAE EDLSGTQFVC ENSBTAP00000011617/1-986 KPGLGQIQEE SEGAGFKALP DSTVSVKKKA ENVSSMEEPE DDLSGTQFVC ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 KPGLGQIQEE SEGAGFKELP GA-------- ---------- ---------- BACU007114/1-1010 KPGLGQIQEE SEGAGFKELP DSTVSVKKRA ENISSVEEAE DDLSGTQFVC 651 700 ENSP00000411250/1-966 ETVIRSLTLD AAPDHNPPCR QKSLQ----- ---------- ---------- ENSBTAP00000011617/1-986 ETVIRSLTLD AAPDHKPPWR QKSPQRAELQ LYATEEQQPT VLPGFCSKES ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 ---------- ---------- -------EFQ LYATEEQQPV VLPGFCSKKS BACU007114/1-1010 ETVIRSLTLD AAPDHRPPCR QKSTHRAEFQ LYATEEQQPV VLPGFCSKKS 701 750 ENSP00000411250/1-966 -MTFALP-EG PLGNEKEEII HIAEEEAVME EEEDEEDEEE EDELKDEVQS ENSBTAP00000011617/1-986 SLKFASPEEG PLADEREEIV QIAEEEAIV- --------EE EDELKDEVRS ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 SLKFASPKEG PLGDEREEIV RIVEEEAVV- -------EEE EDELKDEVQS BACU007114/1-1010 SLKFASPEEG PLGDEREEIV RIFEEEAVV- -------EEE EDELKDEVQS 751 800 ENSP00000411250/1-966 QSSASSEDYI IILPECFDTS RPLGDSMYSS ALSQPGLERG AEGKPGVEAG ENSBTAP00000011617/1-986 QSSASSEDYI IILPECFDTS RPLGDSMYSS ALSQPGLERG AEGEPGIEAG ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 QSSASSEDYI IILPECFDTS RPLGDSMYSS ALSQPGLERG AEGEPGVEAG BACU007114/1-1010 QSSASSEDYI IILPECFDTS RPLGDSMYSS ALSQPGLERG AEGEPGVEAG 801 850 ENSP00000411250/1-966 QEPAEAGERL PGGENQPQEH SISDILTTSQ TLETVPLIPE VVELPPSLPR ENSBTAP00000011617/1-986 QEPVEAGERP LGGDNQPQGH NINDILMTSQ TLDTVPLTPE VVGLPPQLPR ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 QEPVEAGERP PGGENQPQGH SINDILMTSQ TLDTVPLTPE VVGPPPRLPR BACU007114/1-1010 QEPVEAGERP PGGENQPQGH SINDILMTSQ TLDTVPLTPE VVGPPPRLPR 851 900 ENSP00000411250/1-966 SSPCVHHHGS PGVDLPVTIP EVSSVPDQIR GEPRGSSGLV NSRQKSYDHS ENSBTAP00000011617/1-986 SPPSAQHHGS PGVDLPVTAP EVSSVPGQIR EELRGPSGLV NSRPKSYDHS ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 SPPYAQHHGS LGVDLPVTVP EVSSVPDQSR GELRGSSGLV NSRQKSYDHS BACU007114/1-1010 SPPYAQYHGS PGVDLPVTVP EVSSVPDQSR GELRGSSGLV NSRQKSYDHS 901 950 ENSP00000411250/1-966 ---------- ---------- -----RHHHG SSIAGGLVKG ALSVAASAYK ENSBTAP00000011617/1-986 R--------- ---------- ---HHHHHHG NSIAGGLVKG ALSVAASAYK ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 ---------- ---------- -----RHHHG SSIAGGLVKG ALSVAASAYK BACU007114/1-1010 RIRAQIIRRK ITIHISLGRQ FGFPRRHHHG SSIAGGLVKG ALSVAASAYK 951 1000 ENSP00000411250/1-966 ALFAGPPVTA QPIISEDQTA ALMAHLFEMG FCDRQLNLRL LKKHNYNILQ ENSBTAP00000011617/1-986 ALFAGPPVTA QPIVSEDQTA ALMAHLFEMG FCDRQLNLRL LKKHNYNILQ ENSTTRP00000011140/1-478 ---------- ---------- ---------- ---------- ---------- bmy_21176T0/1-874 ALFAGPPVTA QPIVSEDQTA ALMSHLFEMG FCDRQLNLRL LKKHNYNILQ BACU007114/1-1010 ALFAGPPVTA QPIVSEDQTA ALMSHLFEMG FCDRQLNLRL LKKHNYNILQ 1001 1050 ENSP00000411250/1-966 VVTELLQLNN NDWYSQRY ENSBTAP00000011617/1-986 VVTELLQVNN NDWYSHRY ENSTTRP00000011140/1-478 ---------- -------- bmy_21176T0/1-874 VVTELLQINN NDWYSHRY BACU007114/1-1010 VVTELLQINN NDWYSHRY