KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:16 2014 Check: 00 .. Name: ENSP00000254337/1-600 Len: 672 Check: 4873 Weight: 1.00 Name: ENSTTRP00000007935/1-596 Len: 672 Check: 4542 Weight: 1.00 Name: ENSBTAP00000011642/1-600 Len: 672 Check: 9526 Weight: 1.00 Name: bmy_04840T0/1-672 Len: 672 Check: 8617 Weight: 1.00 Name: BACU009393/1-569 Len: 672 Check: 9758 Weight: 1.00 // 1 50 ENSP00000254337/1-600 MAPSSKSERN SGAGSGGGGP GGAGGKRAAG RRREHVLKQL ERVKISGQLS ENSTTRP00000007935/1-596 MAPSSKSERN SGAGSGGGGP GGAGGKRATG RRREHVLKQL ERVKISGQLS ENSBTAP00000011642/1-600 MAPSSKSERN SGAGSGGGGP GGAGGKRAAG RRREHVLKQL ERVKISGQLS bmy_04840T0/1-672 MAPSSKSERN SGAGSGGGGP GGAGGKRATG RRREHVLKQL ERVKISGQLS BACU009393/1-569 ---------- ----MAGLDP KGAA------ ---------- -RPWISGQLS 51 100 ENSP00000254337/1-600 PRLFRKLPPR VCVSLKNIVD EDFLYAGHIF LGFSKCGRYV LSYTSSSGDD ENSTTRP00000007935/1-596 PRLFRKLPPR VCVSLKNIVD EDFLYAGHIF LGFSKCGRYV LSYTSSSGDD ENSBTAP00000011642/1-600 PRLFRKLPPR VCVSLKNIVD EDFLYAGHIF LGFSKCGRYV LSYTSSSGDD bmy_04840T0/1-672 PRLFRKLPPR VCVSLKNIVD EDFLYAGHIF LGFSKCGRYV LSYTSSSGDD BACU009393/1-569 PRLFRKLPPR VCVSLKNIVD EDFLYAGHIF LGFSKCGRYV LSYTSSSGDD 101 150 ENSP00000254337/1-600 DFSFYIYHLY WWEFNVHSKL KL-------- ---------- ---------- ENSTTRP00000007935/1-596 DFSFYIYHLY WWEFNVHSKL RL-------- ---------- ---------- ENSBTAP00000011642/1-600 DFSFYIYHLY WWEFNVHSKL KL-------- ---------- ---------- bmy_04840T0/1-672 DFSFYIYHLY WWEFNVHSKL KLRGAGGGCL GLPGPVLLAG AASGGPRARS BACU009393/1-569 DFSFYIYHLY WWEFNVHSKL KL-------- ---------- ---------- 151 200 ENSP00000254337/1-600 ---------V RQVRLFQDEE IYSDLYLTVC EWPSDASKVI VFGFNTRSAN ENSTTRP00000007935/1-596 ---------V RQVRLFQDEE IYSDLYLTVC EWPSDASKVI VFGFNTRSAN ENSBTAP00000011642/1-600 ---------V RQVRLFQDEE IYSDLYLTVC EWPSDASKVI VFGFNTRSAN bmy_04840T0/1-672 DPRPEHASQV RQVRLFQDEE IYSDLYLTVC EWPSDASKVI VFGFNTRSAN BACU009393/1-569 ---------V RQVRLFQDEE IYSDLYLTVC EWPSDASKVI VFGFNTRSAN 201 250 ENSP00000254337/1-600 GMLMNMMMMS DENHRDIYVS TVAVPPPGRC AACQDASRAH PGDPNAQCLR ENSTTRP00000007935/1-596 GMLMNMMMMS DENHRDIYIS TVAVPPPGRC AACRDASRAH PGDPSAQCLR ENSBTAP00000011642/1-600 GMLMNMMVMS DENHRDIYIS TVAVPPPGRC AACRDASRAH PGDPSAQCLR bmy_04840T0/1-672 GMLMNMMMMS DENHRDIYIS TVAVPPPGRC AACRDASRAH PGDPSAQCLR BACU009393/1-569 GMLMNMMMMS DENHRDIYIS TVAVPPPGRC AACRDASRAH PGDPSAQCLR 251 300 ENSP00000254337/1-600 HGFMLHTKYQ VVYPFPTFQP AFQLKKDQVV LLNTSYSLVA CAVSVHSAGD ENSTTRP00000007935/1-596 HGFMLHTKYQ VVYPFPTFQP AFQLKKDQVV LLNTSYSLVA CAVSVHSAGD ENSBTAP00000011642/1-600 HGFMLHTKYQ VVYPFPTFQP AFQLKKDQVV LLNTSYSLVA CAVSVHSAGD bmy_04840T0/1-672 HGFMLHTKYQ VVYPFPTFQP AFQLKKDQVV LLNTSYSLVA CAVSVHSAGD BACU009393/1-569 HGFMLHTKYQ VVYPFPTFQP AFQLKKDQVV LLNTSYSLVA CAVSVHSAGD 301 350 ENSP00000254337/1-600 RSFCQILYDH STCPLAPASP PEPQSPELPP ALPSFCPEAA PARSSGSPEP ENSTTRP00000007935/1-596 SSFCQILYDH TTYPPAPPSP PGPQSPEMPP VLPTLCPEAA PARPSGAPEH ENSBTAP00000011642/1-600 SSFCQILYDH TTYPPAPPSP PGPQSPELPP VLPSLCPEAA PAWPSGPPDP bmy_04840T0/1-672 SSFCQILYDH TTYPPAPPSP PGPQSPEMPP VLPTLCPEAA PARPSGAPEH BACU009393/1-569 SSFCQILYDH TTYPPAPPSP PGPQSPEMPP VLPTLCPEAA PARPSGAPEH 351 400 ENSP00000254337/1-600 SPAIAKAKEF VADIFRRAKE AKGGVPEEAR PALCPGPSGS RCRAHSEPLA ENSTTRP00000007935/1-596 SPAIAKAKEF VADIFRRAKE AKGGASEEVR PPPCPGPSSS RCRLPSEPLA ENSBTAP00000011642/1-600 SPAIAKAKEF VADIFRRAKE AKGGTSEEVR PPPCPGPSGS RCRLPSEPLG bmy_04840T0/1-672 SPAIAKAKEF VADIFRRAKE AKGGTSEEVR PPPCPGPSSS RCRVPSEPLA BACU009393/1-569 SPAIAKAKEF VADIFRRAKE AKGGTSEEVR PPPCPGPSSS RCRLPSEPLA 401 450 ENSP00000254337/1-600 LCGETAPRDS PPASEAPASE PGYVNYTKLY YVLESGEGTE PED------- ENSTTRP00000007935/1-596 PGGEAVPRDS PLAAEVPASE PGYVNYTKLY YVLGSGEGTE PED------- ENSBTAP00000011642/1-600 PGGEAVPRDS PPAAEAPAPE PGYVNYTKLY YVLGSGEGTE PED------- bmy_04840T0/1-672 PGGEAVPRDS PLAAEVPASE PGYINYTKLY YVLGSGEGTE PEDGEWGAHL BACU009393/1-569 PGGEAVPRDS PLAAEVPASE PGYVNYTKLY YVLGSGEGTE PED------- 451 500 ENSP00000254337/1-600 ---------- ---------- --------EL EDDKISLPFV VTDLRGRNLR ENSTTRP00000007935/1-596 ---------- ---------- --------EL EGK--ILPF- VTDLR-RNXX ENSBTAP00000011642/1-600 ---------- ---------- --------EF EDDKISLPFV VTDLRGRNLR bmy_04840T0/1-672 VGSQAWEAGL EGPLGLPPPS LPPHPAPSEL EDDKISLPFV VTDLRGRNLR BACU009393/1-569 ---------- ---------- --------EL EDDKISLPFV VTDLRGRNLR 501 550 ENSP00000254337/1-600 PMRERTAVQG QYLTVEQLTL DFEYVINEVI RHDATWGHQF CSFSDYDIVI ENSTTRP00000007935/1-596 XXXXXXXXXD QYLTVEQLTL DFEYVINEVI RHDATWGHQF CSFSDYDIVI ENSBTAP00000011642/1-600 PMREQAVVQG QYLTVEQLTL DFEYVINEVI RHDATWGHQF CSFSDYDIVI bmy_04840T0/1-672 PMREQAAVQG QYLTVEQLTL DFEYVINEVI RHDATWGHQF CSFSDYDIVI BACU009393/1-569 PMREQTAVQG QYLTVEQLTL DFEYVINEVI RHDATWGHQF CSFSDYDIVI 551 600 ENSP00000254337/1-600 LEVCPETNQV LINIGLLLLA FPSPTEEGQL RPKTYHTSLK VAWDLNTGIF ENSTTRP00000007935/1-596 LEVCPETNQV LINIGLLLLA FPSPTEEGQL RPKTYHTSLK VAWDLNTGIF ENSBTAP00000011642/1-600 LEVCPETNQV LINIGLLLLA FPSPTEEGQL RPKTYHTSLK VAWDLNTGIF bmy_04840T0/1-672 LEVCPETNQV LINIGLLLLA FPSPTEEGQL RPKTYHTSLK VAWDLNTGIF BACU009393/1-569 LEVCPETNQV LINIGLLLLA FPSPTEEGQL RPKTYHTSLK VAWDLNTGIF 601 650 ENSP00000254337/1-600 ETVSVGDLTE VKGQTSGSVW SSYRKSCVDM VMKWLVPESS GRYVNRMTNE ENSTTRP00000007935/1-596 VTVSVGDLTE VKGQTSGSVW SSYRKSCVDM VMKWLVPESS GRYVNRMTNE ENSBTAP00000011642/1-600 VTVSVGDLTE VKGQTSGSVW SSYRKSCVDM VMKWLVPESS GRYVNRMTNE bmy_04840T0/1-672 VTVSVGDLTE VKGQTSGSVW SSYRKSCVDM VMKWLVPESS GRYVNRMTNE BACU009393/1-569 VTVSVGDLTE VKGQTSGSVW SSYRKSCVDM VMKWLVPESS GRYVNRMTNE 651 700 ENSP00000254337/1-600 ALHKGCSLKV LADSERYTWI VL ENSTTRP00000007935/1-596 ALHKGCSLKV LADSERYTWI VL ENSBTAP00000011642/1-600 ALHKGCSLKV LADSERYTWI VL bmy_04840T0/1-672 ALHKGCSLKV LADSERYTWI VL BACU009393/1-569 ALHKGCSLKV LADSERYTWI VL