KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:18 2014 Check: 00 .. Name: ENSP00000256637/1-831 Len: 1497 Check: 5138 Weight: 1.00 Name: ENSBTAP00000011652/1-832 Len: 1497 Check: 7348 Weight: 1.00 Name: ENSTTRP00000009060/1-831 Len: 1497 Check: 9207 Weight: 1.00 Name: BACU002743/1-1380 Len: 1497 Check: 3736 Weight: 1.00 Name: bmy_15546T0/1-612 Len: 1497 Check: 9241 Weight: 1.00 // 1 50 ENSP00000256637/1-831 MERPWGAADG LSRWPHGLGL LL-LLQLLPP STLSQDRLDA PPPPAAPLPR ENSBTAP00000011652/1-832 MERPGGAADS LSRWPHGLGL LLFLLQLLPP ATLGQDRLDA PPPPAAPLSR ENSTTRP00000009060/1-831 MERLRGAAGD LSRWPHSLSL LL-LLQLLPP ATLGQDRLDA PPPPAAPLSR BACU002743/1-1380 ---------- ---------M LL-SLQ---- ---------- ---------- bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000256637/1-831 WSGPIGVSWG LRAAAAGGAF PRGGRWRRSA PGEDEECGRV RDFVAKLANN ENSBTAP00000011652/1-832 WSGPVGVSWG LRAAAPGGPA PRGGRWRRSA PGEDEDCGGV QDFVSRLANN ENSTTRP00000009060/1-831 WSGPVGVSWG PRAAALGGPA PRGGRWRRSA LDEDEDCGGV RDFVGRLANN BACU002743/1-1380 ---------- ---------- ---------- ---------- ---------- bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000256637/1-831 THQHVFDDLR GSVSLSWVGD STGVILVLTT FHVPLVIMTF GQSKLYRSED ENSBTAP00000011652/1-832 THQHVFDDLS GSVSLSWVGD STGIILVLTT FHVPLVIMTF GQSKLYRSED ENSTTRP00000009060/1-831 THQHVFDDLS GSVSLSWVGD TTGIILVLTT FHVPLVIMTF GQSKLYRXXX BACU002743/1-1380 ---------- ---------- ---IILVLTT FHVPLVIMTF GQSKLYRSED bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000256637/1-831 YGKNFKDITD LINNTFIRTE FGMAIGPENS GKVVLTAEVS GGSRGGRIFR ENSBTAP00000011652/1-832 YGKNFKDITN LINNTFIRTE FGMAIGPENS GKVILTAEVS GGSHGGRIFR ENSTTRP00000009060/1-831 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXVILTAEVS GGSHGGRIFR BACU002743/1-1380 YGKNFKDITN LINNTFIRTE FGMAIGPENS GKVILTAEVS GGSHGGRIFR bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000256637/1-831 SSDFAKNFVQ TDLPFHPLTQ MMYSPQNSDY LLALSTENGL WVSKNFGGKW ENSBTAP00000011652/1-832 SSDFAKNFVQ TNLPFHPLTQ MMYSPQNSDY LLALSTENGL WVSKNFGGKW ENSTTRP00000009060/1-831 SSDFAKNFVQ TNLPFHPLTQ MMYSPQNSDY LLALSTENGL WVSKNFGGKW BACU002743/1-1380 SSDFAKNFVQ TNLPFHPLTQ MMYSPQNSDY LLALSTENGL WVSKNFGGKW bmy_15546T0/1-612 ---------- ---------- MMYSPQNSDY LLALSTENGL WVSKNFGGKW 251 300 ENSP00000256637/1-831 EEIHKAVCLA KWGSDNTIFF TTYANGSCKA DLGALELWRT SDLGKSFKTI ENSBTAP00000011652/1-832 EEIHKAVCLA KWGSENIIFF TTYVNGSCKA DLGALELRRT SDLGKSFKTI ENSTTRP00000009060/1-831 EEIHKAVCLA KWGSENTIFF TTYVNGSCKA DLGALELRRT SDLGKSFKTI BACU002743/1-1380 EEIHKAVCLA KWGSENTIFF TTYVNGSCKA DLGALELRRT SDLGKSFKTI bmy_15546T0/1-612 EEIHKAVCLA KWGSENTIFF TTYVNGSCKA DLGALELRRT SDLGKSFKTI 301 350 ENSP00000256637/1-831 GVKIYSFGLG GRFLFASVMA DKDTTRRIHV STDQGDTWSM AQLPSVGQEQ ENSBTAP00000011652/1-832 GVKIYSFGLG GRFLFASVMA DKDTTRRIHV STDQGDTWSM AQLPSVGQEQ ENSTTRP00000009060/1-831 GVKIYSFGLG GRFLFASVMA DKDTTRRIHV STDQGDTWSM AQLPSVGQEQ BACU002743/1-1380 GVKIYSFGLG GRFLFASVMA DKDTTRRIHV STDQGDTWSM AQLPSVGQEQ bmy_15546T0/1-612 GVKIYSFGLG GRFLFASVMA DKDTTRRIHV STDQGDTWSM AQLPSVGQEQ 351 400 ENSP00000256637/1-831 FYSILAANDD MVFMHVDEPG DTGFGTIFTS DDRGIVYSKS LDRHLYTTTG ENSBTAP00000011652/1-832 FYSILAANDD MVFMHVDEPG DTGFGTIFTS DDRGIVYSKS LDRHLYTTTG ENSTTRP00000009060/1-831 FYSILAANDD MVFMHVDEPG DTGFGTIFTS DDRGIVYSKS LDRHLYTTTG BACU002743/1-1380 FYSILAANDD MVFMHVDEPG DTGFGTIFTS DDRGIVYSKS LDRHLYTTTG bmy_15546T0/1-612 FYSILAANDD MVFMHVDEPG DTGFGTIFTS DDRGIVYSKS LDRHLYTTTG 401 450 ENSP00000256637/1-831 GETDFTNVTS LRGVYITSVL SEDNSIQTMI TFDQGGRWTH LRKPENSECD ENSBTAP00000011652/1-832 GETDFTNVTS LRGVYMTSVL SEDNSIQTMI TFDQGGRWKH LRKPENSECD ENSTTRP00000009060/1-831 GETDFTNVTS LRGVYMTSVL SEDNSIQTMI TFDQGGRWKH LRKPENSECD BACU002743/1-1380 GETDFTNVTS LRGVYMTSVL SEDNSIQTMI TFDQGGRWKH LRKPENSECD bmy_15546T0/1-612 GETDFTNVTS LRGVYMTSVL SEDNSIQTMI TFDQGGRWKH LRKPENSECD 451 500 ENSP00000256637/1-831 ATAKNKNECS LHIHASYSIS QKLNVPMAPL SEPNAVGIVI AHGSVGDAIS ENSBTAP00000011652/1-832 ATAKNKNECS LHIHASYSIS QKLNVPMAPL SEPNAVGIVI AHGSVGDAIS ENSTTRP00000009060/1-831 ATAKNKNECS LHIHASYSIS QKLNVPMAPL SEPNAVGIVI AHGSVGDAIS BACU002743/1-1380 ATAKNKNECS LHIHASYSIS QKLNVPMAPL SEPNAVGIVI AHGSVGDAIS bmy_15546T0/1-612 ATAKNKNECS LHIHASYSIS QKLNVPMAPL SEPNAVGIVI AHGSVGDAIS 501 550 ENSP00000256637/1-831 VMVPDVYISD DGGYSWTKML EGPHYYTILD SGGIIVAIEH SSRPINVIKF ENSBTAP00000011652/1-832 VMVPDVYISD DGGYSWMKML EGPHYYTILD SGGIIVAIEH SSHPINVIKF ENSTTRP00000009060/1-831 VMIPDVYISD DGGYSWLKML EGPHYYTILD SGGIIVAIEH SSHPINVIKF BACU002743/1-1380 VMIPDVYISD DGGYSWLKML EGPHYYTILD SGGIIVAIEH SSRPINVIKF bmy_15546T0/1-612 VMIPDVYISD DGGYSWLKML EGPHYYTILD SGGIIAAIEH SSRPINVIKF 551 600 ENSP00000256637/1-831 STDEGQCWQT YTFTRDPIYF TGLASEPGAR SMNISIWGFT ESFLTSQWVS ENSBTAP00000011652/1-832 STDEGQCWQT YTFTKEPIYF TGLASEPGAR SMNISIWGFT ESFLARQWVS ENSTTRP00000009060/1-831 STDEGQCWQT YIFTREPIYF TGLASEPGAR SMNISIWGFT ESFLTRQWVS BACU002743/1-1380 STDEGQCWQT YMFTREPIYF TGLASEPGAK SMNISIWGFT ESFLARQWVS bmy_15546T0/1-612 STDEGQCWQT YMFTREPIYF TGLASEPGAK SMNISIWGFT ESFLTRQWVS 601 650 ENSP00000256637/1-831 YTIDFKDILE RNCEEKDYTI WLAHSTDPED YEDGCILGYK EQFLRLRKSS ENSBTAP00000011652/1-832 YTIDFKDILE RNCEEKDYTI WLAHSTDPGD YGDGCILGYK EQYLRLRKSS ENSTTRP00000009060/1-831 YTIDFKDILE RNCEEKDYTI WLAHSTDPGD YGDGCILGYK EQYLRLRKSS BACU002743/1-1380 YTIDFKDILE RNCEEKDYTI WLAHSTDPGD YGDGCILGYK EQYLRLRKSS bmy_15546T0/1-612 YTIDFKDILE RNCEEKDYTI WLAHSTDPGD YGDGCILGYK EQYLRLRKSS 651 700 ENSP00000256637/1-831 VCQNGRDYVV TKQPSICLCS LEDFL----- ---------- ---------- ENSBTAP00000011652/1-832 VCQNGRNYVV TKQPSVCPCS LEDFL----- ---------- ---------- ENSTTRP00000009060/1-831 VCQNGRDYVV TKQPSVCPCS LEDFL----- ---------- ---------- BACU002743/1-1380 VCQNGRDYVV TKQPSVCPCS LEDFLWAVQS DNRKFIIDSP GKMHIIMFET bmy_15546T0/1-612 VCQNGRDYVV TKQPSVCPCS LEDFL----- ---------- ---------- 701 750 ENSP00000256637/1-831 ---------- ---------- ---------- --CDFGYYRP ENDSKCVEQP ENSBTAP00000011652/1-832 ---------- ---------- ---------- --CDFGYFRP ENDSKCVEQP ENSTTRP00000009060/1-831 ---------- ---------- ---------- --CDFGYFRP ENDSKCVEQP BACU002743/1-1380 EVGILGDLEK GETIHPELKG ATLKDTLFAD SYSDFGYFRP ENDSKCVEQP bmy_15546T0/1-612 ---------- ---------- ---------- --CDFGYFRP ENDSKCVEQP 751 800 ENSP00000256637/1-831 ELKGHDLEFC LYGREEHLTT NGYRKIPGDK CQGGVNPVRE VKDLKKKCTS ENSBTAP00000011652/1-832 ELKGHDLEFC LYGREEHLTT NGYRKIPGDK CQGGVNPVRE VKDLKKKCTS ENSTTRP00000009060/1-831 ELKGHDLEFC LYGREEHLTT NGYRKIPGDR CEGGVNPARE VKDLKKKCTS BACU002743/1-1380 ELKGHDLEFC LYGREEHLTT NGYRKIPGDR CQGGVNPVRE VKDLKKKCTS bmy_15546T0/1-612 ELKGHDLEFC LYGREEHLTT NGYRKIPGDR CQGGVNPVRE VKDLKKKCTS 801 850 ENSP00000256637/1-831 NFLSPEKQNS KSNSVPIILA IVGLMLVTVV AGVLIVKKYV CGGRFLVHRY ENSBTAP00000011652/1-832 NFLSPEKQNS KSNSVPIILA TVGLMLVTVI AGVLIVKKYV CGGRFLVHRY ENSTTRP00000009060/1-831 NFLSPEKQNS KSNSVPIILA TVGLMLVTVV AGVLIVKKYV CGGRFLVHRY BACU002743/1-1380 NFLSPEKQNS KSNSVPIILA TVGLMLVTVV AGVLIVKKYV CGGRFLVHRY bmy_15546T0/1-612 NFLSPEKQNS KSNSVPIILA TVGLMLVTVV AGVLIVKKYV CGGRFLVHRY 851 900 ENSP00000256637/1-831 SVLQQHAEAN GVDGVDALDT ASHTNKSGYH DDSDE----- ---------- ENSBTAP00000011652/1-832 SVLQQHAEAN GVDGVDALDT ASHTHKSGYH DDSDE----- ---------- ENSTTRP00000009060/1-831 SVLQQHAEAN GVDGVDALDT TSHTHKSGYH DDSDE----- ---------- BACU002743/1-1380 SVLQQHAEAN GVDGVDALDT TSHTHKSGYH DDSDEPKGPT LKKWGVGTLN bmy_15546T0/1-612 SVLQQHAEAN GVDGVDALDT TSHTHKSGYH DDSDE----- ---------- 901 950 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 ALTIGPEKRG KIFNSLTFHF KFCLFARAPQ DLGPDHQALR QTYIRKVGDT bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 LNLLIPFQGK PQPQAICTHD GCALDASHLW LKALERYHRA SCTVSNLIVG bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 NSYALRVFAE NQCGLSQTAS VTADLAHIQR ADFSEAPKFS QPLADCTTVI bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 GCDTQLFCCV HASPKPKTIW LKNKMDIQGN PKYRALTHLG ICSLEIHKPG bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 PFDGGIYTCK AVNSLGEASV DCRVDVKAPG SKLTFAPAGW NMEDLEEDVK bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 FIADETLDFG GLSPSDSREE EDTAVSVTPE KPLRRGLSHR SDPNAVAPAP bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 QSLRLSLGPL SPEKLEEILS EANRLATHLE QCALQERENT GEGPGPRRVK bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000256637/1-831 ---------- ------DLLE ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ------DLLE ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ------DLLE ---------- ---------- ---------- BACU002743/1-1380 PSPRRETFVL KDSPVRDLLP TVSSLARSTP SPSSLTPRLR SSDRKLSVRA bmy_15546T0/1-612 ---------- ------DLLE ---------- ---------- ---------- 1301 1350 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 LRATSGKRPS SMKRESPTCN LFPASKSPAS SPLARSTPPV RGKAGPSGRA bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 TASEKTWAAK LWVNGRREDA ELTLKFLCSS PPGPPTSVRP VLAAQPSTSN bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ---------- BACU002743/1-1380 SQRLSRPQGA AAKPSSRLPV PSAIPRPASR MPLTSRSVPS SKGALLPDSL bmy_15546T0/1-612 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000256637/1-831 ---------- ---------- ---------- ---------- ------- ENSBTAP00000011652/1-832 ---------- ---------- ---------- ---------- ------- ENSTTRP00000009060/1-831 ---------- ---------- ---------- ---------- ------- BACU002743/1-1380 PARKGLPRPS AAGHRVPVSQ RPNLPITGAG RSSLQPPRKV AVPGATR bmy_15546T0/1-612 ---------- ---------- ---------- ---------- -------