KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:44:19 2014 Check: 00 .. Name: ENSP00000266671/1-401 Len: 410 Check: 3535 Weight: 1.00 Name: ENSBTAP00000011655/1-251 Len: 410 Check: 5692 Weight: 1.00 Name: bmy_12523T0/1-372 Len: 410 Check: 7590 Weight: 1.00 Name: ENSTTRP00000016175/1-376 Len: 410 Check: 9306 Weight: 1.00 // 1 50 ENSP00000266671/1-401 MRRAPAAERL LELGFPPRCG RQEPPFPLGV TRGWGRWPIQ KRREGARPVP ENSBTAP00000011655/1-251 ---------- ---------- ---------- ---------- ---------- bmy_12523T0/1-372 MRRAPAAECL SELGFPPRRG RQEPPFPLGV TRGWGGWPIQ KRREGARPEP ENSTTRP00000016175/1-376 MRRAPAAECL SELGFPPRRG RQEPPFPLGV TRGWGGWPIQ KRRERARPEP 51 100 ENSP00000266671/1-401 FSERSQEDGR GPAARSSGTL WRIRTRLSLC RDPE----PP PPLCLLRVSL ENSBTAP00000011655/1-251 ---------- ---------- ---------- ---------- ---------- bmy_12523T0/1-372 FRERSQEDGR GPAARSSRTL WRIRTRLPCC PDPEEPP-PP PPLCFLRVSL ENSTTRP00000016175/1-376 FSERSQEDGR GPAARSSRTL WRIRTRLPCC SDPEEPPQPP PPLCFLRVSL 101 150 ENSP00000266671/1-401 LCALRAGGRG SRWGEDGARL LLLPPARAAG NGEAEPSGGP SYAGRMLESS ENSBTAP00000011655/1-251 ---------- ---------- ---------- ---------- -----MLESS bmy_12523T0/1-372 FCALRAGGRG SRWGEDGARL LLPPPARAAG RGEAEPSGGP PYAGRMLESS ENSTTRP00000016175/1-376 FCALRAGGRG SRWGEDGARL LLPRRARAAG RGEAEPSGGP PYAGRMLESS 151 200 ENSP00000266671/1-401 GCKALKEGVL EKRSDGLLQL WKKKCCILTE EGLLLIPPKQ LQHQQQQQQQ ENSBTAP00000011655/1-251 GCKALKEGVL EKRSDGLLQL WKKKCCILTE EGLLLIPPKQ LQH---HHQQ bmy_12523T0/1-372 GCKALKEGVL EKRSDGLLQL WKKKCCILTE EGLLLIPPKQ LQH------- ENSTTRP00000016175/1-376 GCKALKEGVL EKRSDGLLQL WKKKCCILTE EGLLLIPPKQ LQH------- 201 250 ENSP00000266671/1-401 QQQQQQQQPG QGPAEPSQPS GPAVASLEPP VKLKELHFSN MKTVDCVERK ENSBTAP00000011655/1-251 QQQQQQQQPG QGSVEPSQPG GPAVASLEPP VKLKELHFSN MKTVDCVERK bmy_12523T0/1-372 ----QQQQPG QGPVEPSQPG GPAVGSLEPP VKLKELHFSN MKTVDCVERK ENSTTRP00000016175/1-376 -----QQQPG QGPVEPSQPG GPAVGSLEPP VKLKELHFSN MKTVDCVERK 251 300 ENSP00000266671/1-401 GKYMYFTVVM AEGKEIDFRC PQDQGWNAEI TLQMVQYKNR QAILAVKSTR ENSBTAP00000011655/1-251 GKYMYFTVVM AEGKEIDFRC PQDQGWNAEI TLQMVQYKNR QAILAVKSTR bmy_12523T0/1-372 GKYMYFTVVM AEGKEIDFRC PQDQGWNAEI TLQMVQYKNR QAILAVKSTR ENSTTRP00000016175/1-376 GKYMYFTVVM AEGKEIDFRC PQDQGWNAEI TLQMVQYKNR QAILAVKSTR 301 350 ENSP00000266671/1-401 QKQQHLVQQQ PPSQPQP-QP QLQPQPQP-- --QPQPQPQP QSQPQPQPQP ENSBTAP00000011655/1-251 QKQQHLVQQQ PP-QPQPLQP QSQAQPQPQS QAQPQPQPKP QPQPKPQPQP bmy_12523T0/1-372 QKQQHLVQQQ PP-QPQL-QP QSHPQAPP-- --QPQ----P QPQPQPQPKP ENSTTRP00000016175/1-376 QKQQHLVQQQ PP-QPQL-QP QSHPQAPP-- --QPQPQPKP QPQPQPQPKP 351 400 ENSP00000266671/1-401 KPQPQQLHPY PHPHPHPHSH PHSHPHPHPH PHPHQIPHPH PQPHSQPHGH ENSBTAP00000011655/1-251 KPQPQSLHPY PHSHPHPH-- --------PH PHAHPLPHPH PPPLSQAHGH bmy_12523T0/1-372 QPQPQPLHPY PHPHLRSH-- --------PH ------PHPH PLPLSQPHGQ ENSTTRP00000016175/1-376 QPQPQPLHPY PHPHLRSH-- --------PH ------PHPH PLPLSQPHGH 401 450 ENSP00000266671/1-401 RLLRSTSNSA ENSBTAP00000011655/1-251 RLLRSTSNSA bmy_12523T0/1-372 RLLRSTSNSA ENSTTRP00000016175/1-376 RLLRSTSNSA