KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:20 2014 Check: 00 .. Name: ENSP00000400099/1-1239 Len: 1435 Check: 3560 Weight: 1.00 Name: ENSBTAP00000011667/1-1228 Len: 1435 Check: 8428 Weight: 1.00 Name: ENSTTRP00000008695/1-1221 Len: 1435 Check: 3102 Weight: 1.00 Name: bmy_05259T0/1-1428 Len: 1435 Check: 9663 Weight: 1.00 Name: BACU018108/1-1335 Len: 1435 Check: 1759 Weight: 1.00 // 1 50 ENSP00000400099/1-1239 ---------- ---------- ---------- ---------- ----MTIWQM ENSBTAP00000011667/1-1228 ---------- ---------- ---------- ---------- -------WTP ENSTTRP00000008695/1-1221 ---------- ---------- ---------- ---------- ---------- bmy_05259T0/1-1428 MLPXKGLRLR RCQYPAAEQR EGRAAAAAAT AAAAARPSRA ATSARRARSP BACU018108/1-1335 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000400099/1-1239 QKQAQRGSPA RTHSMMSLSV RPQRRLLSAR VNRSQSFAGV LGSHERGP-- ENSBTAP00000011667/1-1228 TPSPPPGSPA RTHSMMSLSV RPQRRLLSAR VSRSQSFAGV LGSQERGP-- ENSTTRP00000008695/1-1221 ---------- ----MMSLSV RPQRRLLSAR VNRSQSFAGV LGSQERGPSL bmy_05259T0/1-1428 RSPAQPWSPA RTRSMMSLSV RPQRRLLSAR VSRSQSFAGV LGSQERGP-- BACU018108/1-1335 ---------- -----MSLSV RPQRRLLSAR VSRSQSFAGV LGSQERGP-- 101 150 ENSP00000400099/1-1239 --RSFPVFSP PGPPRKPPAL SRVSRMFSVA HPAAKVPQPE RLDLVYTALK ENSBTAP00000011667/1-1228 --RSFPAFSP PGPPRKPPAL SRVSKMFSVA HPAPKVPQPE RLDLVYTALK ENSTTRP00000008695/1-1221 FFRSFPAFSP PGPPRKPPAL SRVSKMFSVA HPAPKVPQLE RLDLVYTTLK bmy_05259T0/1-1428 --RSFPAFSP PGPPRKPPAL SRVSKMFSVA HPAPKVPQPE RLDLVYTALK BACU018108/1-1335 --RSFPAFSP PGPPRKPPAL SRVSKMFSVA HPAPKVPQPE RLDLVYAALK 151 200 ENSP00000400099/1-1239 RGLTAYLEVH QQEQEKLQGQ IRESKRNSRL GFLYDLDKQV KSIERFLRRL ENSBTAP00000011667/1-1228 RGLTAYLEVH QQEQEKLQGQ IRESKRNSRL GFLYDLDKQV KSIERFLRRL ENSTTRP00000008695/1-1221 RGLTAYLEVH QQEQEKLQRQ IRESKRNSRL GFLYDLDKQV KSIERFLRRL bmy_05259T0/1-1428 RGLTAYLEVH QQEQEKLQRQ IRESKRNSRL GFLYDLDKQV KSIERFLRRL BACU018108/1-1335 RGLTAYLEVH QQEQEKLQRQ IKESKRNSRL GFLYDLDKQV KSIERFLRRL 201 250 ENSP00000400099/1-1239 EFHASKIDEL YEAYCVQRRL RDGAYNMVRA YTTGSPGSRE ARDSLAEATR ENSBTAP00000011667/1-1228 EFHASKIDEL YESYCVQRRL RDGAYNMVRA YSTGSPGSRE ARDSLAEATR ENSTTRP00000008695/1-1221 EFHASKIDEL YEAYCVQRRL RDGAYNMVRA YSTGSPGSRE ARDSLAEATR bmy_05259T0/1-1428 EFHASKIDEL YEAYCVQRRL RDGAYNMVRA YSTGSPGSRE ARDSLAEATR BACU018108/1-1335 EFHASKIDEL YEAYCVQRRL RDGAYNMVRA YSTGSPGSRE ARDSLAEATR 251 300 ENSP00000400099/1-1239 GHREYTESMC LLESELEAQL GEFHLRMKGL AGFARLCVGD QYEICMKYGR ENSBTAP00000011667/1-1228 GHREYTESMC LLESELEAQL GEFHLRMKGL AGFARLCVGD QYEIYMKYGR ENSTTRP00000008695/1-1221 GHREYTESMC LLESELEAQL GEFHLRMKGL AGFARLCVGD QYEICMKYGR bmy_05259T0/1-1428 GHREYTESMC LLESELEAQL GEFHLRMKGL AGFARLCVGD QYEICMKYGR BACU018108/1-1335 GHREYTESMC LLESELEAQL GEFHLRMKGL AGFARLCVGD QYEICMKYGR 301 350 ENSP00000400099/1-1239 QRWKLRGRIE GSGKQVWDSE ETIFLPLLTE FLSIKVTELK GLANHVVVGS ENSBTAP00000011667/1-1228 QRWKLRGRIE SSGKQVWDSE ETVFLPLLTE FLSIKVVEYK GLRKHIVVGG ENSTTRP00000008695/1-1221 QRWKLRGRIE GSGKQVWDSE ETVFLPLLTE FLSIKVTELK GLANHVVVGS bmy_05259T0/1-1428 QRWKLRGRIE GSGKQVWDSE ETVFLPLLTE FLSIKVTELK GLANHVVVGS BACU018108/1-1335 QRWKLRGRIE GSGKQVWDSE ETVFLPLLTE FLSIKVTELK GLANHVVVGS 351 400 ENSP00000400099/1-1239 VSCETKDLFA ALPQVVAVDI NDLGTIKLSL EVTWSPFDKD DQPSAASSVN ENSBTAP00000011667/1-1228 PQXETKDLFA ALPQVVAVDI NDLGTIKLSL EVTWSPFDKD DQPSAASTVN ENSTTRP00000008695/1-1221 VSCETKDLFA ALPQVVAVDI NDLGTIKLSL EVTWSPFDKD DQPSAASTVN bmy_05259T0/1-1428 VSCETKDLFA ALPQVVAVDI NDLGTIKLSL EVTWSPFDKD DQPSAASTVN BACU018108/1-1335 VSCETKDLFA ALPQVVAVDI NDLGTIKLSL EVMWSPFDKD DQPSAASTVN 401 450 ENSP00000400099/1-1239 KASTVTKRFS TYSQSPPDTP SLREQAFYNM LRRQEELENG TAWSLSSESS ENSBTAP00000011667/1-1228 KASTVTKRFS TYSQSPPDTP SLREQAFYNM LRRQEELENG TAWSLSSESS ENSTTRP00000008695/1-1221 KASTVTKRFS TYSQSPPDTP SLREQAFYNM LRRQEELENG TAWSLSSESS bmy_05259T0/1-1428 KASTVTKRFS TYSQSPPDTP SLREQAFYNM LRRQEELENG TAWSLSSESS BACU018108/1-1335 KASTVTKRFS TYSQSPPDTP SLREQAFYNM LRRQEELENG TAWSLSSESS 451 500 ENSP00000400099/1-1239 DDSSSPQLSG TARHSPAPRP LVQQPEPLPI QVAFRRPETP SSGPLDEEGA ENSBTAP00000011667/1-1228 DDSSSPQLSG TARHSSAPRP LVQQPEPLPI QVAFRRAETS TSGPMDEEGA ENSTTRP00000008695/1-1221 DDSSSPQLSG TARHSSAPRP LVQQPEPLPI QVAFRRAETS TSGTVDEEGA bmy_05259T0/1-1428 DDSSSPQLSG TARHSSAPRP LVQQPEPLPI QVAFRRAETS TSGTVDEERA BACU018108/1-1335 DDSSSPQLSG TARHSSAPRP LVQQPEPLPI QVAFRRAETS TSGTVDEERA 501 550 ENSP00000400099/1-1239 VAPVLANGHA PYSRTLSHIS EASVDAALAE ASVEAVGPES LAWGPSPPTH ENSBTAP00000011667/1-1228 VAPALANGHA PYSRTLSHIS EASVDAALAE ASVEAADLES LVRGPSPPAC ENSTTRP00000008695/1-1221 MAPALANGHA PYSRTLSHIS EASVDAALAE ASVEAAGLES LVQGPSPPAH bmy_05259T0/1-1428 MAPALANGHA PYSRTLSHIS EASVDAALAE ASVEAAGLES LVRGPSPPAP BACU018108/1-1335 MAPALANGHA PYSRTLSHIS EASVDAALAE ASVEAAGLES LVRGPSPPAP 551 600 ENSP00000400099/1-1239 PAPTHGEHPS PVPPALDPGH SATSSTLGTT GSVPTSTDPA PSAHLDSVHK ENSBTAP00000011667/1-1228 PDPTHGEHPA RVPPVLDAGH SATNPTLSTT G-------PA PSAHLGSANK ENSTTRP00000008695/1-1221 PGPTHGEHPS PVPSALDPGH SAISPALSTT GPAHTSTDPA PSAHLDSVNK bmy_05259T0/1-1428 PDPTHGEHPS PVLSALDPGH SATSPTLSTT GPTHTSTDPA PSAHLDSVNK BACU018108/1-1335 PDPTHGEHPS PVLSALDPGH SATSPTLSTT GPAHTSTDPA PSAHLDSVNK 601 650 ENSP00000400099/1-1239 STDSGPSELP GPTHTTTGST YSAITTTHSA PSPLTHTTTG STHKPIISTL ENSBTAP00000011667/1-1228 TINSSSPEL- -PTQTTTGST YCAMSPTHSA PS-LIHCTTA STHKTVVSIL ENSTTRP00000008695/1-1221 TINSSSPELP DPTHTTTSAT SSVVSPTHSA PS-LTHTTTV STHKTVVSTI bmy_05259T0/1-1428 SINSSSPELP DPTHTTTSST SSAVSPTHSA PS-LTHTTTS STHKTVVSTV BACU018108/1-1335 SINSSSPELP DPTHTTTSST SSAVSPTHSA PS-LTHTTTS STHKTVVSTI 651 700 ENSP00000400099/1-1239 TTTGPTLNII GPVQTTTSPT HTM------- -------PSP THTTASPTHT ENSBTAP00000011667/1-1228 TTTGPTPSTT GPVQT----- ---------- ---------- --TTTSPTHT ENSTTRP00000008695/1-1221 TITGPTPSTT GSVQTTTSPT HKPM------ -------PDP VQTTTSLSHT bmy_05259T0/1-1428 TITGPTPSTT GPVQTTTSPT HKPMLSTLTP AAPAPNTTGP VQTTTSLSHT BACU018108/1-1335 TITGPTPSTT GPVQTTTSPT HKPMLSTLTP AAPAPNTTDP VQTTTSLSHT 701 750 ENSP00000400099/1-1239 STSPTHTPTS PTHKTSMSPP TTTSPTPSGM GLVQTATSPT HPTT------ ENSBTAP00000011667/1-1228 TTSPTHTVAS PTH------- ATASPTYTTT GPTHTTASPT YTTTGSTHTT ENSTTRP00000008695/1-1221 VTNLTHTVTS PTNKHVISTL STAGPTPSTT HPAQTTTSPT HTTT------ bmy_05259T0/1-1428 VTHLTHTVTS PTSKHMISTL STAGPTPSTT DPAQTTTSPT HATTSTTHTT BACU018108/1-1335 VTNLTHTVKS PTSKHMISTL STAGPTPSTT DPAQTTTSPT HTTTSTTHTT 751 800 ENSP00000400099/1-1239 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011667/1-1228 ASPTYTTTGP THTTT----- ---------- ---------- ---------- ENSTTRP00000008695/1-1221 ---------- ---------- ---------- ---------- ---------- bmy_05259T0/1-1428 ASPTHTTISP THTATSPTHT TISPAHTIIS PAHTTASSTY TTTSSTHTTA BACU018108/1-1335 ASPTHTTISP THTATSPTHT ATSPTHTTIS PAHTTASSTY TTTSSTHTTA 801 850 ENSP00000400099/1-1239 ---------- ---------- -----SPTHP TTSPILINVS PSTSLELATL ENSBTAP00000011667/1-1228 ---------- ---------- ---TSSPTHS VTSPTLITVS SSTFLDFAKL ENSTTRP00000008695/1-1221 ---------- ---------- -----SPTHT TASPTLITVS PSTFLDLATL bmy_05259T0/1-1428 TPTHTARIST HTATPNAKDP VQITRSPTHS VTSPTLITVS PSTVLDLATL BACU018108/1-1335 TPTHTARIST HTATPNAKDP VQITRSPTHS VTSPTLITVS PSTFLDLATL 851 900 ENSP00000400099/1-1239 SSPSKHSDPT LPGTDSLPCS PPVSNSYTQA DPMAPRTPHP SPAHSSRKPL ENSBTAP00000011667/1-1228 SSPSANTDPP HLGTDPLSGS YLASTPCTQA DPISPSTSHP SPACSSWEPL ENSTTRP00000008695/1-1221 SNPSANTDPP LPGIDPLSCS YPASTSCTQA DPIALSTSHP SPTCSSWEPL bmy_05259T0/1-1428 SNPSANTDPP LPGIDPLSCS YAASTSCTQA DPIALSTSHP SPTCSSWEPL BACU018108/1-1335 SNPSANTDPP LPGIDPLSCS YAASTSCTQA DPIALSTSHP SPTCSSWEPL 901 950 ENSP00000400099/1-1239 TSPAPDPSES TVQSLSPTPS PPTPAPQHSD LCLAMAVQTP VPTAAGGSGD ENSBTAP00000011667/1-1228 TTPSPDPSEA IRQSPSLPPS PLAPVPQHPD PKVARATPAP VPGAAGGAGD ENSTTRP00000008695/1-1221 TSPSPKLPEA IRQSPSPPPS PLAPVPQHSD PRVARAAQAP VPGAAGGAGD bmy_05259T0/1-1428 TSPSPKLPEA IHQSPSPPPS PLAPVPQHSD PRVARAAQAP VPGAAGGAGD BACU018108/1-1335 TSPSPKLPEA IHQSPSPPPS PLAPVTQHSD PRVARAAQAP VPGAAGGAGD 951 1000 ENSP00000400099/1-1239 RSLEEALGAL MAALDDYRGQ FPELQGLEQE VTRLESLLMQ RQGLTRSRAS ENSBTAP00000011667/1-1228 RRLEEALGAL MAALDDYRGQ FPELQGLEQE VTRLESLLMQ RQGLTRSRAS ENSTTRP00000008695/1-1221 RKLEEALGAL MAALDDYRGQ FPELQGLEQE VTRLESLLMQ RQGLTRSRAS bmy_05259T0/1-1428 RKLEEALGAL MAALDDYRGQ FPELQGLEQE VTRLESLLMQ RQGLTRSRTS BACU018108/1-1335 RKLEEALGAL MAALDDYRGQ FPELQGLEQE VTRLESLLMQ RQGLTRSRTS 1001 1050 ENSP00000400099/1-1239 SLSITVEHAL ESFSFLNEDE DEDNDVPGDR PPSSPEAGAE DSIDSPSARP ENSBTAP00000011667/1-1228 SLSITVEHAL ESFSFLNEDE DEDNDSPGDR PPNSLAPGAE DSLDSPSARP ENSTTRP00000008695/1-1221 SLSITVEHAL ESFSFLN--E DEDNDSPGDR PPNSPEPGAE DSLDSPSARP bmy_05259T0/1-1428 SLSITVEHAL ESFSFLN--E DEDNDSPGDR PPNSPEPGAE DSLDSPSARP BACU018108/1-1335 SLSITVEHAL ESFSFLN--E DEDNDSPGDR PPNSPEPGAE DSLDSPSARP 1051 1100 ENSP00000400099/1-1239 LSTGCPALDA ALVRHLYHCS RLLLKLGTFG PLRCQEAWAL ERLLREARVL ENSBTAP00000011667/1-1228 LSTECPALDA ALVQHLYHCS RLLLKLGTFG PLRCQEAWAL ERLLREARVL ENSTTRP00000008695/1-1221 LSTECPALDT ALVQHLYHCS CLLLKLGTFG PLRCQEAWAL ERLLREARVL bmy_05259T0/1-1428 LSTECPALDT ALVQHLYHCS RLLLKLGTFG PLRCQEAWAL ERLLREARVL BACU018108/1-1335 LSTECPALDT ALVQHLYHCS RLLLKLGTFG PLRCQEAWAL ERLLREARVL 1101 1150 ENSP00000400099/1-1239 EAVCEFSRRW EIPASSAQEV VQFSASRPGF LTFWDQCTER LSCFLCPVER ENSBTAP00000011667/1-1228 EAVCELSRRW EIPATSAQEV VQFSASRPGF LTFWDQCTEG FSPFICPVER ENSTTRP00000008695/1-1221 EAVCELSRRW EIPATSAQEV VQFSASRPGF LIFWDQCTEG LSPFICPVER bmy_05259T0/1-1428 EAVCELSRRW EIPATSAQEV VQFSASRPGF LTFWDQCTEG LSPFICPVER BACU018108/1-1335 EAVCELSRRW EIPATSAQEV VQFSASRPGF LTFWDQCTEG LSPFICPVER 1151 1200 ENSP00000400099/1-1239 VLLTFCNQYG ARLSLRQPGL AEAVCVKFLE DALGQKLPRR PQPGPGEQLT ENSBTAP00000011667/1-1228 VLLTFCNQYS ARLSLRQPGL AEAVCVKFLE DALGQKLPRN -QAGPGEQLT ENSTTRP00000008695/1-1221 VLLTFCNQYG ARLSLRQPGL AEAVCVKFLE DALGQKLPRR PQSGPGEQLT bmy_05259T0/1-1428 VLLTFCNQYG ARLSLRQPGL AEAVCVKFLE DALGQKLPRR PQSGPGEQLT BACU018108/1-1335 VLLTFCNQYG ARLSLRQPGL AEAVCVKFLE DALGQKLPRR PQSGPGEQLT 1201 1250 ENSP00000400099/1-1239 VFQFWSFVET LDSPTMEAYV TETAEE---- ---------- ---------- ENSBTAP00000011667/1-1228 VFQFWSYVEA LDCSSMEAYV TETAEE---- ---------- ---------- ENSTTRP00000008695/1-1221 VFQFWSYFEA LDSSSMEAYV TETAEE---- ---------- ---------- bmy_05259T0/1-1428 VFQFWSYVEA LDSSSMEAYV TETAEEGEAV ALVTKWPDAM GGSEDVNSGP BACU018108/1-1335 VFQFWSYVEA LDSSSMEAYV TETAEEGEAV ALVTKWPDAM GGSEGVNSGP 1251 1300 ENSP00000400099/1-1239 ---------- ---------- ---------V LLVRNLNSDD QAVVLKALRL ENSBTAP00000011667/1-1228 ---------- ---------- ---------V LLVRNLNSDD QAIVVKALRL ENSTTRP00000008695/1-1221 ---------- ---------- ---------V LLVRNLNSDD QAVVLKALRL bmy_05259T0/1-1428 EGTKEPTLGG SLPCQLVPTD TPLPGFLLSV LLVRNLNSDD QAVVLKALRL BACU018108/1-1335 E--------- ---------- ---------V LLVRNLNSDD QAVVLKALRL 1301 1350 ENSP00000400099/1-1239 APEGRLRRDG LRALSSLLVH GNNKVMAAVS TQLRSLSLGP TFRERALLCF ENSBTAP00000011667/1-1228 APEGRLQRGG LRALSSLLVH GNNKVMAAVS TQLRSLSLGP AFRERALLCF ENSTTRP00000008695/1-1221 APEGRLRRDG LRALSSLLVH GNNKVMAAVS TQLRSLSLGP AFRERALLCF bmy_05259T0/1-1428 APEGRLRSDG LRALSSLLVH GNNKVMAAVS TQLRSLSLGP AFRERALLCF BACU018108/1-1335 APEGRLRRDG LRALSSLLVH GNNKVMAAVS TQLRSLSLGP AFRERALLCF 1351 1400 ENSP00000400099/1-1239 LDQLEDEDVQ TRVAGCLALG CIKAPEGIEP LVYLCQTDTE AVREAARQSL ENSBTAP00000011667/1-1228 LDQLEDEDVQ TRVAGCLALG CIKAPEGIEP LVYLCQTDTE AVREAARQSL ENSTTRP00000008695/1-1221 LDQLEDEDVQ TRVAGCLALG CIKAPEGIEP LVYLCQTXXX XXXXXXXXXX bmy_05259T0/1-1428 LDQLEDEDVQ TRVAGCLALG CIKAPEGIEP LVYLCQTDTE AVREAARQSL BACU018108/1-1335 LDQLEDEDVQ TRVAGCLALG CIKAPEGIEP LVYLCQTDTE AVREAARQSL 1401 1450 ENSP00000400099/1-1239 QQCGEEGQSA HRRLEESLDA LPRIFGPGSM ASTAF ENSBTAP00000011667/1-1228 QQCGEEGQSA HRRLEESLDA LPHIFGPGSM ASTAF ENSTTRP00000008695/1-1221 XXXXXXXXXX XXXXXESLDA LPCIFGPGSM ASTAF bmy_05259T0/1-1428 QQCGEEGQSA HRRLEESLDA LPRIFGPGSM ASTAF BACU018108/1-1335 QQCGEEGQSA HRRLEESLDA LPRIFGPGSM ASTAF