KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 16:44:26 2014  Check: 00 ..

 Name: ENSP00000284818/1-160     Len:    190  Check:  6907  Weight:  1.00
 Name: BACU011156/1-183          Len:    190  Check:  3593  Weight:  1.00
 Name: bmy_02183T0/1-125         Len:    190  Check:  2131  Weight:  1.00
 Name: ENSBTAP00000011670/1-160  Len:    190  Check:  4715  Weight:  1.00
 Name: ENSTTRP00000012874/1-122  Len:    190  Check:  7007  Weight:  1.00

//


                          1                                                   50
ENSP00000284818/1-160     MLPFLFFSTL FSSIFTEAQK QYWVCNSSDA SISYTYCDKM QYPISINVNP 
BACU011156/1-183          MFPFMLFSTL FSSTFTEPGE KLWICNSSDT SVWYSYCDNL KFPISVNSEP 
bmy_02183T0/1-125         ---------- ---------- ---------- --------NL KFPISINAEP 
ENSBTAP00000011670/1-160  MFPFVLFSTL FSSIFTEPRE NRWVCNSSDA TVWYDYCDNL KFPVSIRSEP 
ENSTTRP00000012874/1-122  ---------- ---------- ---------- --------NL KFPISINAEP 


                          51                                                 100
ENSP00000284818/1-160     CIELKRSKGL LHIFYIPRRD LKQLYFNLYI TVNTMNLPKR KEVICRGSDD 
BACU011156/1-183          CITLKGGRGN LYLYYIPRRD LKSLYFNIYV SFKSVNFPVR KEVICRGSDD 
bmy_02183T0/1-125         CITLKGGHGN LYLYYIPRRD IKSLYFNIYV SFKSVNFPVR KEVICRGSDD 
ENSBTAP00000011670/1-160  CITLKGSRGI LYLYYIPRRD IRSLYFNIYL STKSMNFPLR KEVICRGYDD 
ENSTTRP00000012874/1-122  CITLKGGRGN LYLYYIPRRD IKSLYFNIYV SFKSVNFPVR KQVICRGSDD 


                          101                                                150
ENSP00000284818/1-160     DYSFCRALKG ----ETVNTT ISFSFKGIKF SKGKYK---C VVEAISGSPE 
BACU011156/1-183          DYSFCRALKG GRDLKSLYFN IYVSFKSVNF PVRKEV---- ---ICRGSDD 
bmy_02183T0/1-125         HYSFCRALKG ----ETVNTT ISFSFKGIRF SKPKRHGGPC PSHCASGP-- 
ENSBTAP00000011670/1-160  DFSFCRALKG ----ETVNTT IQFSFRGIRF SKGQYN---C ITEAIEGNTE 
ENSTTRP00000012874/1-122  DYSFCRALKG ----ETVNTT ISFSFKEIRF SKGRYD---C ITEAIAGNTE 


                          151                                                200
ENSP00000284818/1-160     EMLFCLEFVI LHQPNSN--- ---------- ---------- 
BACU011156/1-183          DYSFCRALKG ALAPNPLFFL RLGGGATTSA AIINQPVGST 
bmy_02183T0/1-125         -----MTYGV SPEADPGAFL HWKQ------ ---------- 
ENSBTAP00000011670/1-160  EKLFCLNFTI IHYPDFN--- ---------- ---------- 
ENSTTRP00000012874/1-122  ERLLCLNFTI IYHPDFS--- ---------- ----------