KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:27 2014 Check: 00 .. Name: ENSTTRP00000002400/1-917 Len: 1068 Check: 9800 Weight: 1.00 Name: ENSP00000326227/1-914 Len: 1068 Check: 8237 Weight: 1.00 Name: ENSBTAP00000011675/1-916 Len: 1068 Check: 2399 Weight: 1.00 Name: bmy_15853T0/1-886 Len: 1068 Check: 1636 Weight: 1.00 Name: BACU004942/1-1025 Len: 1068 Check: 7526 Weight: 1.00 // 1 50 ENSTTRP00000002400/1-917 MDAAEKEEIS VEDEAVDKNI FKDCSKIAFY RRQKQRLSKK STYRALLDSV ENSP00000326227/1-914 MEAAVKEEIS LEDEAVDKNI FRDCNKIAFY RRQKQWLSKK STYQALLDSV ENSBTAP00000011675/1-916 MESAEKEEIS VEDEAVDKNV FKDCSKIAFY RRQKQLLSKK STYRALLDSV bmy_15853T0/1-886 MDAAEKEEIS VEDEAVDKNI FKDCSKIAFY RRQKQRLSKK STYRALLDSV BACU004942/1-1025 MDAAEKEEIS VEDEAVDKNI FKDCSKIAFY RRQKQRLSKK STYRALLDSV 51 100 ENSTTRP00000002400/1-917 TEGKESTRFQ IINEAAKVPL LAEVYGIEGN IFRLKINEET PLKPRYEVPD ENSP00000326227/1-914 TTDEDSTRFQ IINEASKVPL LAEIYGIEGN IFRLKINEET PLKPRFEVPD ENSBTAP00000011675/1-916 TPGEDSARFQ IINEPAKVPL LAEVCGIEGN IFRLKINEEI PLKPRYEVPD bmy_15853T0/1-886 TAGKESTRFQ IINEAAKVPL LAEVYGIEGN IFRLKINEET PLKPRYEVPD BACU004942/1-1025 TAGKESTRFQ IINEAAKVPL LAEVYGIEGN IFRLKINEET PLKPRYEVPD 101 150 ENSTTRP00000002400/1-917 VLTSKPSTVR LISCSGDTGG LVLANGKGDL KCHITANPFK IDLVSEEEVV ENSP00000326227/1-914 VLTSKPSTVR LISCSGDTGS LILADGKGDL KCHITANPFK VDLVSEEEVV ENSBTAP00000011675/1-916 VLTSKLTTVR LTSCPGDTGS LVLASGKGDL KCHITANPFK VDLVSEEEVV bmy_15853T0/1-886 VLTSKPSPVR LISCSGDTGS LVLANGK-DL KCRITANPFK IDLVSEEEVV BACU004942/1-1025 VLTSKPSPVR LISCSGDTGS LVLANGKGDL KCRITANPFK IDLVSEEEVV 151 200 ENSTTRP00000002400/1-917 MSINSLGQLY FEQLQIPPKQ -RATKENEED TSDDTT--QX XXXXXXXXXX ENSP00000326227/1-914 ISINSLGQLY FEHLQILHKQ -RAAKENEEE TSVDTS--QE NQEDLGLWEE ENSBTAP00000011675/1-916 MSINSLGQLY FEQLQIPPKQ -RATKKNEED ASIDTTQQQE NQEELGLWEE bmy_15853T0/1-886 MSINSLGQLY FEQLQIPPKQ SRATKENEED TSDDTT--QE NQEELGLWEE BACU004942/1-1025 MSINSLGQLY FEQLQIPPKQ -RATKENEED TSDDTT--QE NQEELGLWEE 201 250 ENSTTRP00000002400/1-917 XXXXXXXXXX XXPASIGLDF SLHGFEHVYG IPQHAESHQL KNTSDGDAYR ENSP00000326227/1-914 KFGKFVDIKA NGPSSIGLDF SLHGFEHLYG IPQHAESHQL KNTGDGDAYR ENSBTAP00000011675/1-916 KFENFVDVKV NGPASIGLDF SLHGFEHLYG IPQHAESHQL KNTSDSDAYR bmy_15853T0/1-886 KFRNFVDVKD NGPTSIGLDF SLHGFEHVYG IPQHAESHQL KNTSDGDAYR BACU004942/1-1025 KFRNFVDVKD NGPASIGLDF SLHGFEHVYG IPQHAESHQL KNTSDGDAYR 251 300 ENSTTRP00000002400/1-917 LYNLDVYGYK IHDKMGIYGS VPYLLAHKLG RTLGIFWLNA SETLVEINTS ENSP00000326227/1-914 LYNLDVYGYQ IYDKMGIYGS VPYLLAHKLG RTIGIFWLNA SETLVEIN-- ENSBTAP00000011675/1-916 LYNLDVYGYK IHDKMGIYGS VPYLLAHKLG RTLGIFWLNA SETLVEIK-- bmy_15853T0/1-886 LYNLDVYGYK IHDKMGIYGS VPYLLAHKLG RTLGIFWLNA SETLVEIN-- BACU004942/1-1025 LYNLDVYGYK IHDKMGIYGS VPYLLAHKLG RTLGIFWLNA SETLVEIN-- 301 350 ENSTTRP00000002400/1-917 GDTEPAVKDA LTQTGPVAVK QKVRSQTDVH WMSESGIIDV FLLTGPTPSD ENSP00000326227/1-914 --TEPAVEYT LTQMGPVAAK QKVRSRTHVH WMSESGIIDV FLLTGPTPSD ENSBTAP00000011675/1-916 --TEPAVKYT LTQTGPVAAK QKVGSRTDVH WMSESGIIDV FLLTGPTPSD bmy_15853T0/1-886 --TEPAVKYA LTQTGPVAAK QKVRSQTDVH WMSESGIIDV FLLTGPTPSD BACU004942/1-1025 --TEPTVKYA LTQMGPVAAK QKVRSQTDVH WMSESGIIDV FLLTGPTPSD 351 400 ENSTTRP00000002400/1-917 VFKQYSYLTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000326227/1-914 VFKQYSHLTG TQAMPPLFSL GYHQCRWNYE DEQDVKAVDA GFDEHDIPYD ENSBTAP00000011675/1-916 VFKQYSYLTG TQAMPPLFSL GYHQCRWNYE DEQDVKAVDA GFDEHDIPYD bmy_15853T0/1-886 VFKQYSYLTG TQAMPPLFSL GYHQCRWNYE DEHDVKAVDA GFDEHDIPYD BACU004942/1-1025 IFKQYSYLTG TQAMPPLFSL GYHQCRWNYE DEHDVKAVDA GFDEHDIPYD 401 450 ENSTTRP00000002400/1-917 XXXXXXXXXX XXXXXXXXXX XXXXPKRMQE LLRS-KRKLV VISDPHIKID ENSP00000326227/1-914 AMWLDIEHTE GKRYFTWDKN RFPNPKRMQE LLRSKKRKLV VISDPHIKID ENSBTAP00000011675/1-916 VMWLDIEHTE GKRYFTWDKK RFPNPKRMQD LLRSKKRKTI VLSKIHVKVD bmy_15853T0/1-886 VMWLDVEHTE GKRYFTWDKK RFPNPKRMQE LLGSKKRKLV VISDPHIKID BACU004942/1-1025 VMWLDIEHTE GKRYFTWDKK RFPNPKRMQE LLRSKKRKLV VISDPHIKID 451 500 ENSTTRP00000002400/1-917 PDYLVYAKAK EQGFFVRNHE GGDFEGVCWP GLSSYLDFTS PKVREWYSSL ENSP00000326227/1-914 PDYSVYVKAK DQGFFVKNQE GEDFEGVCWP GLSSYLDFTN PKVREWYSSL ENSBTAP00000011675/1-916 PNYSVYAKAK EQGFFVRNHE GGDFEGVCWP GLSSYLDFTN PKVRKWYSSL bmy_15853T0/1-886 PDYLVYAKAK EQGFFVRNHE GGDFEGVCWP GLSSYLDFTS PEVREWYSSL BACU004942/1-1025 PDYSVYAKAK EQGFFVRNHE GGDFEGVCWP GLSSYLDFTS PKVREWYSSL 501 550 ENSTTRP00000002400/1-917 FAFSVYQGST DILHIWNDMN EPSVFRGPEL TMQKNAIHHG NWEHRELHNI ENSP00000326227/1-914 FAFPVYQGST DILFLWNDMN EPSVFRGPEQ TMQKNAIHHG NWEHRELHNI ENSBTAP00000011675/1-916 FAFSVYQGST DILHIWNDMN EPSVFKGPEQ TMQKNAIHHG NWEHRELHNI bmy_15853T0/1-886 FAFSVYQGST DILYIWNDMN EPSVFRGPEL TIQKNAIHHG NWEHRELHNI BACU004942/1-1025 FAFSVYQGST DILYIWNDMN EPSVFRGPEL TMQKNAIHHG NWEHRELHNI 551 600 ENSTTRP00000002400/1-917 YGFYQQMATA EGLIQRSKGK ERPFVLTRSF FAGSQRYGAV WTGDNTAKWS ENSP00000326227/1-914 YGFYHQMATA EGLIKRSKGK ERPFVLTRSF FAGSQKYGAV WTGDNTAEWS ENSBTAP00000011675/1-916 YGFYQQMATT EGLIQRSKGK ERPFVLTRSF FAGSQKYGAV WTGDNTAEWS bmy_15853T0/1-886 YGFYQQMATA EGLIQRSKGK ERPFVLTRSF FAGSQKYGAV WTGDNTAEWS BACU004942/1-1025 YGFYQQMATA EGLIQRSKGK ERPFVLTRSF FAGSQKY--- ---------- 601 650 ENSTTRP00000002400/1-917 YLKISIPMLL TLSVTGISFC GADVGGFIGN PKAELLVRWY QAGAYQPFFR ENSP00000326227/1-914 NLKISIPMLL TLSITGISFC GADIGGFIGN PETELLVRWY QAGAYQPFFR ENSBTAP00000011675/1-916 HLKISIPMLL TLSVTGISFC GADVGGFIGD PEAELLVRWY QAGAYQPFFR bmy_15853T0/1-886 YLKISIPMLL TLSVTGISFC GADVGGFIGN PEAELLVRWY QAGAYQPFFR BACU004942/1-1025 ---------- ---------- -ADVGGFIGN PEAELLVRWY QAGAYQPFFR 651 700 ENSTTRP00000002400/1-917 GHATKNTKRR EPWLFGEEHT RLIQEAIRER YTLLPYWYSL FYSAHVASQP ENSP00000326227/1-914 GHATMNTKRR EPWLFGEEHT RLIREAIRER YGLLPYWYSL FYHAHVASQP ENSBTAP00000011675/1-916 GHATMNTKRR EPWLFGEEHT RLIREAIRER YTLLPYWYSL FYSAHVASQP bmy_15853T0/1-886 GHATKNTKRR EPWLFGEEHT RLIQEAIRER YTLLPYWYSL FYSAHVASQP BACU004942/1-1025 GHATKNTKRR EPWLFGEEHT RLIQEAIRER YTLLPYWYSL FYSAHVASQP 701 750 ENSTTRP00000002400/1-917 VMRPLWVEFP DEVETFGVED EYMLGSALLV HPVTEPKATV VDVFLPG-SS ENSP00000326227/1-914 VMRPLWVEFP DELKTFDMED EYMLGSALLV HPVTEPKATT VDVFLPG-SN ENSBTAP00000011675/1-916 VMRPLWVEFP NELETFSVED EYMLGGALLV HPVTEPKATV VDVFLPG-SS bmy_15853T0/1-886 VMRPLWVEFP DELETFGMED EYMLGPP--- ---------- ---YLPSLCS BACU004942/1-1025 VMRPLWVEFP DELETFSMED EYMLGSALLV HPVTEPKATV VDVFLPG-SN 751 800 ENSTTRP00000002400/1-917 EVWYDSKTFA HWEGACTVKI PVALDTIPVF QRGGSVVPIK TTIGRSTGCM ENSP00000326227/1-914 EVWYDYKTFA HWEGGCTVKI PVALDTIPVF QRGGSVIPIK TTVGKSTGWM ENSBTAP00000011675/1-916 EIWYDSKTFA HWKGACTVKI PVTLDAIPVF QRGGSVVPIK TTIGRSTGFM bmy_15853T0/1-886 QIYFAFES-- ---------- -ILVTNIPVF QRGGSVVPIK TTIGRSTGCM BACU004942/1-1025 EVWYDSKTFA HWEGACTVKI PVALDTIPVF QRGGSVVPIK TTIGRSTGCM 801 850 ENSTTRP00000002400/1-917 TDSPYGLWVA LSTKGSAVGE FYLDDGHSFQ YLHQKQFLHR KFSFASGVLI ENSP00000326227/1-914 TESSYGLRVA LSTKGSSVGE LYLDDGHSFQ YLHQKQFLHR KFSFCSSVLI ENSBTAP00000011675/1-916 TNSPYGLRVA LSTKGSAMGE FYLDDGHSFQ YLHQKQFLHR KFSFSSGVLT bmy_15853T0/1-886 TDSPYGLWVA LSTKGSAVGE LYLDDGHSFQ YLHQKQFLHR KFSFASGVLI BACU004942/1-1025 TDSPYGLWVA LSTKGSAVGE LYLDDGHSFQ YLHQKQFLHR KFSFASGVLI 851 900 ENSTTRP00000002400/1-917 NSCADKRGHY PSKCVVEQIL VLGLKKQPSS VTSHSPDGKA QPVAFTY--- ENSP00000326227/1-914 NSFADQRGHY PSKCVVEKIL VLGFRKEPSS VTTHSSDGKD QPVAFTY--- ENSBTAP00000011675/1-916 NSCADERGHY PSKCVVEQIL VLGLKKQPSS VTAHSADGSA QPVAFTY--- bmy_15853T0/1-886 NSCADKRGHY PSKCVVEQIL VLGLKKQPSS VTSHSPDGKA QPVAFTY--- BACU004942/1-1025 NSCADKRGHY HSKCVVEQIL VLGLKKQPSS VTSHSP-GLN HPVDPGYGGP 901 950 ENSTTRP00000002400/1-917 ---------- ---------- ---------- ---------- ---------- ENSP00000326227/1-914 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011675/1-916 ---------- ---------- ---------- ---------- ---------- bmy_15853T0/1-886 ---------- ---------- ---------- ---------- ---------- BACU004942/1-1025 GVLPVMLTVI SASVAPRTGA EPRSPGPIPQ AAQGQGTEAG GGNPSGIYSA 951 1000 ENSTTRP00000002400/1-917 ---------- ---------- --CAKTSTLN LE-------- ------KFSL ENSP00000326227/1-914 ---------- ---------- --CAKTSILS LE-------- ------KLSL ENSBTAP00000011675/1-916 ---------- ---------- --HATTSTLK LE-------- ------TLSL bmy_15853T0/1-886 ---------- ---------- --CAKTSTLN LE-------- ------KFSL BACU004942/1-1025 IISRNFPIIG VKEKTFEQLH KKCLEKKVLY VDPEFPPDET SLFYSQKFPI 1001 1050 ENSTTRP00000002400/1-917 NI-------- ---------G ADWK------ ---------- -VQIQ----- ENSP00000326227/1-914 NI-------- ---------A TDWE------ ---------- -VRII----- ENSBTAP00000011675/1-916 NI-------- ---------G ADWK------ ---------- -VRVQ----- bmy_15853T0/1-886 NI-------- ---------G ADWK------ ---------- -VQIQ----- BACU004942/1-1025 QFIWKRPPAH DCPEGPQFGR EDWKELHSPT QSLPYCEGTG TCRIPDEISS 1051 1100 ENSTTRP00000002400/1-917 ---------- -------- ENSP00000326227/1-914 ---------- -------- ENSBTAP00000011675/1-916 ---------- -------- bmy_15853T0/1-886 ---------- -------- BACU004942/1-1025 MTLFSPPPMF SDKSKLLT