KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:28 2014 Check: 00 .. Name: ENSP00000292377/1-579 Len: 630 Check: 8294 Weight: 1.00 Name: ENSBTAP00000011679/1-508 Len: 630 Check: 8821 Weight: 1.00 Name: ENSTTRP00000008370/1-580 Len: 630 Check: 4989 Weight: 1.00 Name: bmy_16100T0/1-613 Len: 630 Check: 8782 Weight: 1.00 Name: BACU012087/1-471 Len: 630 Check: 8208 Weight: 1.00 // 1 50 ENSP00000292377/1-579 MSALRPLLLL LLPLCPGPGP GPGSEAKVTR SCAETRQVLG ARGYSLNLIP ENSBTAP00000011679/1-508 ---LRSLLLL LLPLCPGPGP GPGIEAKVTR SCTETRQILG ARGYSLSVLP ENSTTRP00000008370/1-580 MYALRSLLLL LLPLCPGPGP GPGIEAKVTR SCTETRQILG ARGYSLSLLP bmy_16100T0/1-613 MYALRSLLLL LLPLCPGPGP GPGIEAKVTR SCTETRQILG ARGYSLSLLP BACU012087/1-471 MYALRSLLLL LLPLCPGPGP GPGIEAKVTR SCTETRQILG ARGYSLSLLP 51 100 ENSP00000292377/1-579 PALISGEHLR VCPQEYTCCS SETEQRLIRE TEATFRGLVE DSGSFLVHTL ENSBTAP00000011679/1-508 PALISGEHLR ICPQEYTCCS SEIEQRLTWE TEATFRGLVE ENGSFLVHTL ENSTTRP00000008370/1-580 PALISGEHLR ICPQEYTCCS SEIEQKLTWE TEATFRGLVE ESGSFLVHTL bmy_16100T0/1-613 PALISGEHLR ICPQEYTCCS SEIEQKLTWE TEATFRGLVE ESGSFLVHTL BACU012087/1-471 PALISGEHLR ICPQEYTCCS SEIEQKLTWE TEATFRGLVE ESGSFLVHTL 101 150 ENSP00000292377/1-579 AARHRKFDEF FLEMLSVAQH SLTQLFSHSY GRLYAQHALI FNGLFSRLRD ENSBTAP00000011679/1-508 AARHRKFDEV FREMLSSAEH SLSMLFHRSF GRLYTQHTPL FSGLFSRLRD ENSTTRP00000008370/1-580 AARHRRFDEV FREMLSSAEH SLSLLFQRSF GRLYAQHTPL FSGLFSRLRD bmy_16100T0/1-613 AARHRRFDEV FREMLSSAEH SLSLLFHRSF GRLYAQHTPL FSGLFSRLRD BACU012087/1-471 AARHRRFDEV FREMLSSAEH SLSLLFHRSF GRLYAQHTSL FSGLFSRLRD 151 200 ENSP00000292377/1-579 FYGESGEGLD DTLADFWAQL LERVFPLLHP QYSFPPDYLL CLSRLASSTD ENSBTAP00000011679/1-508 YYERSGEGLD DALVDFWAQL LEKMFPLLHP QYIFSPDYLF CLTRLASSAD ENSTTRP00000008370/1-580 YYERSGEGLD DALVDFWAQL LEKMFPLLHP QYIFSPDYLF CLTRLASSAD bmy_16100T0/1-613 YYERSGEGLD DALVDFWAQL LEKMFPLLHP QYIFSPDYLF CLTRLASSAD BACU012087/1-471 YYERSGEGLD DALVDFWAQL LEKMFPLLHP QYIFSPDYLF CLTRLASSAD 201 250 ENSP00000292377/1-579 GSLQPFGDSP RRLRLQITRT LVAARAFVQG LETGRNVVSE ALKVPVSEGC ENSBTAP00000011679/1-508 DSLKPFGDSP RRLRLQITRA LVAARAFVQG LETGRNVVSE TLKMPLSEGC ENSTTRP00000008370/1-580 DSLKPFGDSP RRLRLQITRA LVAARAFIQG LETGRDVVSE TLKMPLSEGC bmy_16100T0/1-613 DSLKPFGDSP RRLRLQITRA LVAARAFIQG LETGRDVVSE TLKMPLSEGC BACU012087/1-471 DSLKPFGDSP RRLRLQITRA LVAARAFIQG LETGRDVVSE TLKMPLSEGC 251 300 ENSP00000292377/1-579 SQALMRLIGC PLCRGVPSLM PCQGFCLNVV RGCLSSRGLE PDWGNYLDGL ENSBTAP00000011679/1-508 KRAVMRLTGC PLCRGVPSLP PCRGFCLNVA YGCIGSQGLD PDWGPYLDGL ENSTTRP00000008370/1-580 KRAVMRLTGC PLCRGVPSLP PCRGFCLNVA HGCISSQGLD PDWGAYLDGL bmy_16100T0/1-613 KRAVMRLTGC PLCRGVPSLP PCRGFCLNVA HGCIGSQGLD PDWGAYLDGL BACU012087/1-471 KRAVMRLTGC PLCRGVPSLP PCRGFCLNVA HGCIGSQGLD PDWGAYLDGL 301 350 ENSP00000292377/1-579 LILADKLQGP FSFELTAESI GVKISEGLMY LQENSAKVSA QVFQECGPPD ENSBTAP00000011679/1-508 LFLADKIQGP FSFELAAQSI GVKISEGLMH LQENSVGVSA QVFQECGSPQ ENSTTRP00000008370/1-580 LFLAEKIQGP FSFELAAQSI GVKIAEGLMH LQENSVGLSA QVFQECGSPQ bmy_16100T0/1-613 LFLAEKIQGP FSFELAAQSI GVKIAEGLMH LQENSVGLSA ---QECGSPQ BACU012087/1-471 LFLAEKIQGP FSFELAAQSV GVKIAEGLMH LQENSVGLSA ---------- 351 400 ENSP00000292377/1-579 PVPARNRRAP PPREEAGRLW S--MVTEEER PTTAAGTNLH RLVWELRERL ENSBTAP00000011679/1-508 PARARARRAP APREEVGRFW SAAAAAEEER PTTAAGASLP RLVWELRERL ENSTTRP00000008370/1-580 PAPARARRAP APREEVGRLW S-AAAAEEER PTTAAGASLP RLVWELRERL bmy_16100T0/1-613 PAPARARRAP APREEVGRLW S-AAAAEEER PTTAAGASLP RLVSGGRQAG BACU012087/1-471 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000292377/1-579 ARMRGFWARL SLTVCGDSRM AADASLEAAP C------WTG A-GRGRYLPP ENSBTAP00000011679/1-508 GRVRGIWAGL PQTVCGDPRV AADLSQEAAP C------WTG A-GPGRYLSP ENSTTRP00000008370/1-580 GRVRGFWAGL PLTVCGDPRV AADVSQEAAP C------WTG A-GRGRYLSP bmy_16100T0/1-613 AQVR------ --RGAGGART SSSRALFASR CGSSASGWAG VRGPPRSCGP BACU012087/1-471 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000292377/1-579 VVGG------ ---------- ---------- ---------- ---SPAEQVN ENSBTAP00000011679/1-508 VVG------- ---------- ---------- ---------- ---FQAGKLD ENSTTRP00000008370/1-580 VVGG------ ---------- ---------- ---------- ---PQAGQID bmy_16100T0/1-613 LPGGGALLDR SWAGPVRAGR RRRRAGEADS VGGAGREPPG LLCSQAGQID BACU012087/1-471 ---------- ---------- ---------- ---------- ----QAGQID 501 550 ENSP00000292377/1-579 NPELKVDASG PDVPTRRRRL QLRAATARMK TAALGHDLDG QDAD-EDASG ENSBTAP00000011679/1-508 NPELDAEASS PDLQTRRRRL QLRATTTRMK AAALGRDLEL E--DWEDASG ENSTTRP00000008370/1-580 NPELDAEASS PDLQTRRRRL QLRAATTRMK AAALGRDLEL DGQDWEDASG bmy_16100T0/1-613 NPELDAEASS PDLQTRRRRL QLRAATTRMK AAALGRDLEL E--DWEDASG BACU012087/1-471 NPELDAEASS PDLQTRRRRL QLRAATTRMK AAALGRDLEL E--DWEDASG 551 600 ENSP00000292377/1-579 SGGGQQYADD WMAG--AVAP PARPPRPPYP PRRDGSGGKG GGGSARYNQG ENSBTAP00000011679/1-508 SGEGQHYADD ---------- ---------- ---------- ---------- ENSTTRP00000008370/1-580 SGEGQHYADD WMAGAAAVAP PARPPR---P PRRDGAGGKG GGVIIRHSQD bmy_16100T0/1-613 SGEGQHYADD WMAGAAAVAP PARPPR---P PRRDGAGGKG GGVIIRHSQD BACU012087/1-471 SGEGQHYADD WMAGAAAVAP PARPPR---P PRRDGAGGRG GGVIIRHSQD 601 650 ENSP00000292377/1-579 RSRSGGASIG FHTQTILILS LSALALLGPR ENSBTAP00000011679/1-508 ---------- ---------- ---------- ENSTTRP00000008370/1-580 RSRTGGTSVS FHTQPLLILF LSALALLGPR bmy_16100T0/1-613 KSRTGGTSVS FHTQPLLILF LSALALLGPR BACU012087/1-471 KSRTGGTSVG FHTQPLLILF LSALALLGPR