KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:31 2014 Check: 00 .. Name: ENSTTRP00000002293/1-1466 Len: 1585 Check: 6100 Weight: 1.00 Name: bmy_01408T0/1-1320 Len: 1585 Check: 5697 Weight: 1.00 Name: BACU013591/1-343 Len: 1585 Check: 5338 Weight: 1.00 Name: ENSP00000337459/1-1468 Len: 1585 Check: 6789 Weight: 1.00 Name: ENSBTAP00000011690/1-1325 Len: 1585 Check: 3917 Weight: 1.00 // 1 50 ENSTTRP00000002293/1-1466 MENHMFSVKQ IQPNVISVRL FKRKVGGLGF LVKERVSKPP VIISDLIRGG bmy_01408T0/1-1320 ---------- ---------- ---------- ---------- ---------- BACU013591/1-343 MENHMFSVTQ IQPNVISVRL FKRKVGGLGF LVKERVSKPP VIISDLIRGG ENSP00000337459/1-1468 MEDHMFGVQQ IQPNVISVRL FKRKVGGLGF LVKERVSKPP VIISDLIRGG ENSBTAP00000011690/1-1325 MESHMFSVQQ IQPNVISVRL FKRKVGGLGF LVKERVSKPP VIISDLIRGG 51 100 ENSTTRP00000002293/1-1466 AAEQSGLIQA GDIILAVNGQ PLVDLSYDSA LEVLRGIASE THVVLILRGP bmy_01408T0/1-1320 ---------- ---------- ---------- ---------- -----MARCP BACU013591/1-343 AAEQSGLIQA GDIILAVNGQ PLVDLSYDSA LEVLRGIASE THVVLILRGP ENSP00000337459/1-1468 AAEQSGLIQA GDIILAVNGR PLVDLSYDSA LEVLRGIASE THVVLILRGP ENSBTAP00000011690/1-1325 AAEQSGLIQA GDIILAVNGQ PLVDLSYDSA LEVLRGIASE THVVLILRGP 101 150 ENSTTRP00000002293/1-1466 EGFTTHLETT FTGDGTPKTI RVTR-LGPPT TAVDLSHQSS AXXXXXXXXX bmy_01408T0/1-1320 AQ-------- ---------- -------PQR AALILEQ--- ---------- BACU013591/1-343 EGFTTHLETT FTGDGTPKTI RVTRPLGPPT TAVDLSHQSS ASKEQTLAVD ENSP00000337459/1-1468 EGFTTHLETT FTGDGTPKTI RVTQPLGPPT KAVDLSHQPP AGKEQPLAVD ENSBTAP00000011690/1-1325 EGFTTHLETT FTGDGTPKTI RVTQPLGPPT AAVDLSHQAS AGREQTLVVD 151 200 ENSTTRP00000002293/1-1466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01408T0/1-1320 ---------- ---------- ---------- ---------- ---------A BACU013591/1-343 GATGPGNGPQ HVPDQGQEAG SLSHTNGLAP RPPSQDPAKK SS-------G ENSP00000337459/1-1468 GASGPGNGPQ HAYDDGQEAG SLPHANGLAP RPPGQDPAKK ATRVSLQGRG ENSBTAP00000011690/1-1325 GATGPGNGPQ HAPDPGQEAS SLAHANGLAA RPPGQDPAKK STGVALQGSR 201 250 ENSTTRP00000002293/1-1466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXDLDGKSHR bmy_01408T0/1-1320 KQGKLLQACE ---------- ---GGAAPDT NE-------- -------SHR BACU013591/1-343 ENNKLLKEIE PVLNLLTSGG KGINGGGPAK AETKDAEIQV NRDLDGKSHK ENSP00000337459/1-1468 ENNELLKEIE PVLSLLTSGS RGVKGGAPAK AEMKDMGIQV DRDLDGKSHK ENSBTAP00000011690/1-1325 ENNKLLKEIE PVLNLLTSGG KAINGGGPAK TETKDVEIQV DRDLDGKSHK 251 300 ENSTTRP00000002293/1-1466 PLPLG---VE NDRVFNDLWG KGN--MPVVL NNPYSEKEQP PASGKQSPIK bmy_01408T0/1-1320 QLVTGDRFQE EHHLSPSQWK QSSSALKYII SHLYSLLQ-P PASGKQSPIK BACU013591/1-343 PLPLG---VE NDRVFNDLWG KGN--MPVVL NNPYSEKEQP PASGKQSPIK ENSP00000337459/1-1468 PLPLG---VE NDRVFNDLWG KGN--VPVVL NNPYSEKEQP PTSGKQSPTK ENSBTAP00000011690/1-1325 PLPLG---VE NDRVFSDLWG KGS--MPVVL NNPYSEKEQP PASGKQSPTK 301 350 ENSTTRP00000002293/1-1466 NGSPSKCPRF LKVKNWETDV VLSDTLHLKS TLGTGCTEHI CMGSIMLPSQ bmy_01408T0/1-1320 NGSPSKCPRF LKVKNWETDV ---------- --GTGCTEHI CMGSIMLPSQ BACU013591/1-343 NGSPSKCPRF LKVKNWETNV VLSDTLHLKS TLGNGM---- ---------- ENSP00000337459/1-1468 NGSPSKCPRF LKVKNWETEV VLTDTLHLKS TLETGCTEYI CMGSIMHPSQ ENSBTAP00000011690/1-1325 NGSPSKCPRF LKVKNWETDV VLSDTLHLKS TLGTGCTEHI CMGSIMLPSQ 351 400 ENSTTRP00000002293/1-1466 QIRRPEDVRT KEQLFPLAKE FIDQYFSSIK RFGSKAHMER LEEVSKEIET bmy_01408T0/1-1320 QIRRPEDVRT KEQLLPLAKE FIDQ------ -FGSKAHMER LEEVNRETES BACU013591/1-343 ---------- ---------- ---------- ---HRAHL-- ---------- ENSP00000337459/1-1468 HARRPEDVRT KGQLFPLAKE FIDQYYSSIK RFGSKAHMER LEEVNKEIDT ENSBTAP00000011690/1-1325 QIRKPEDVRT KEQLFPLAKE FIDQYYSSIK RFGSKAHMER LEEVNKEIET 401 450 ENSTTRP00000002293/1-1466 TSTYQLKDTE LIYGAKHAWR NASRCVGRIQ WSKLQVFDAR DCTTAHGMFN bmy_01408T0/1-1320 TSTYQLRDTE LIYGAKHAWR NASRCVGRIQ WSKLQVFDAR DCTTAHGMFN BACU013591/1-343 ---------- --YGVHHA-- ---------- ---------- ---------- ENSP00000337459/1-1468 TSTYQLKDTE LIYGAKHAWR NASRCVGRIQ WSKLQVFDAR DCTTAHGMFN ENSBTAP00000011690/1-1325 TSTYQLKDTE LIYGAKHAWR NASRCVGRIQ WSKLQVFDAR DCTTAHGMFN 451 500 ENSTTRP00000002293/1-1466 YICNHIKYAT NKGNLRSAIT IFPQRTDGKH DFRVWNSQLI RYAGYKQPDG bmy_01408T0/1-1320 YICNHIKYAT NKGNLRSAIT IFPQRTDGKH DFRVWNSQLI RYAGYKQPDG BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 YICNHVKYAT NKGNLRSAIT IFPQRTDGKH DFRVWNSQLI RYAGYKQPDG ENSBTAP00000011690/1-1325 YICNHIKYAT NKGNLRSAIT IFPQRTDGKH DFRVWNSQLI RYAGYKQPDG 501 550 ENSTTRP00000002293/1-1466 SILGDPASVE LTEICIQQGW KPPRSRFDVL PLLLQANGND PELFQIPPEL bmy_01408T0/1-1320 SILGDPASVE FTEICIQQGW KPPRSRFDVL PLLLQANGND PELFQIPPEL BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 STLGDPANVQ FTEICIQQGW KPPRGRFDVL PLLLQANGND PELFQIPPEL ENSBTAP00000011690/1-1325 SILGDPANVE FTEICIQQGW KPPRSRFDVL PLLLQANGND PELFQIPPEL 551 600 ENSTTRP00000002293/1-1466 VLEVPIRHPK LEWFKDLGLK WYGLPAVSNM LLEIGGLEFS ACPFSGWYMG bmy_01408T0/1-1320 VLEVPIRHPK FEWFKDLGLK WYGLPAVSSM LLEIGGLEFS ACPFSGWYMG BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 VLEVPIRHPK FEWFKDLGLK WYGLPAVSNM LLEIGGLEFS ACPFSGWYMG ENSBTAP00000011690/1-1325 VLEVPIRHPK FEWFKDLGLK WYGLPAVSNM LLEIGGLEFS ACPFSGWYMG 601 650 ENSTTRP00000002293/1-1466 TEIGVRDYCD SSRYNILEEV AKKMNLDMRK TSSLWKDQAL VEINIAVLYS bmy_01408T0/1-1320 TEIGVRDYCD SSRYNILEEV AKKMNLDMRK TSSLWKDQAL VEINIAVLYS BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 TEIGVRDYCD NSRYNILEEV AKKMNLDMRK TSSLWKDQAL VEINIAVLYS ENSBTAP00000011690/1-1325 TEIGVRDYCD SSRYNILEDV AKKMNLDMRK TSSLWKDQAL VEINIAVLYS 651 700 ENSTTRP00000002293/1-1466 FQSDKVTIVD HHSATESFIK HMENEYHCRG GCPADWVWIV PPMSGSITPV bmy_01408T0/1-1320 FQSDKVTIVD HHSATESFIK HMENEYRCRG GCPADWVWIV PPMSGSITP- BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 FQSDKVTIVD HHSATESFIK HMENEYRCRG GCPADWVWIV PPMSGSITPV ENSBTAP00000011690/1-1325 FQSDKVTIVD HHSATESFIK HMENEYRCRG GCPADWVWIV PPMSGSITPV 701 750 ENSTTRP00000002293/1-1466 FHQEMLNYRL TPSFEYQPDP WNTHIWKGTN GTPTKRRAIG FKKLAEAVKF bmy_01408T0/1-1320 ---------- -------PDP WNTHVWKGTN GTPTKRRAIG FKKLAEAVKF BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 FHQEMLNYRL TPSFEYQPDP WNTHVWKGTN GTPTKRRAIG FKKLAEAVKF ENSBTAP00000011690/1-1325 FHQEMLNYRL TPSFEYQPDP WNTHVWKGTN GTPTKRRAIG FKKLAEAVKF 751 800 ENSTTRP00000002293/1-1466 SAKLMGQAMA KRVKATILYA TETGKSQAYA KTLCEIFKHA FDAKXXXXXX bmy_01408T0/1-1320 SAKLMGQAMA KRVKATILYA TETGKSQAYA KTLCEIFKHA FDAKVMSMEE BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 SAKLMGQAMA KRVKATILYA TETGKSQAYA KTLCEIFKHA FDAKVMSMEE ENSBTAP00000011690/1-1325 SAKLMGQAMA KRVKATILYA TETGKSQAYA KTLCEIFKHA FDAKVMSMEE 801 850 ENSTTRP00000002293/1-1466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXY bmy_01408T0/1-1320 YDIVHLEHET LVLVVTSTFG NGDPPENGEK FGCALMEMRH PSSVHEERKY BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 YDIVHLEHET LVLVVTSTFG NGDPPENGEK FGCALMEMRH PNSVQEERKY ENSBTAP00000011690/1-1325 YDIVHLEHET LVLVVTSTFG NGDPPENGEK FGCALMEMRN PNSVHEERK- 851 900 ENSTTRP00000002293/1-1466 PKPLRLFPRK GPPLP-GDTE VHGLAAARDS QRRSYKVRFN SVSSYSDSRK bmy_01408T0/1-1320 PEPLRFFPRK GPPLPRGDTE VHGLAAAHDS QRRSYKVRFN SVSSYSDSRK BACU013591/1-343 ---------- ---------- ---------- ---------- ---SFSANTK ENSP00000337459/1-1468 PEPLRFFPRK GPPLPNGDTE VHGLAAARDS QHRSYKVRFN SVSSYSDSQK ENSBTAP00000011690/1-1325 ---------- ---------- ---------- ---SYKVRFN SVSSYSDSRK 901 950 ENSTTRP00000002293/1-1466 SSGDGPDLRD NFESAGPLAN VRFSVFGLGS RAYPHFCAFG HAVDTLLEEL bmy_01408T0/1-1320 SSGDGPDLRD NFESAGPLAN VRFSVFGLGS RAYPHFCAFG HAVDTLLEEL BACU013591/1-343 A--------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 SSGDGPDLRD NFESAGPLAN VRFSVFGLGS RAYPHFCAFG HAVDTLLEEL ENSBTAP00000011690/1-1325 SSGDGPDLRD NFESTGPLAN VRFSVFGLGS RAYPHFCAFG HAVDTLLEEL 951 1000 ENSTTRP00000002293/1-1466 GGERILKMRE GDELCGQEEA FRTWAKKVFK XXXXXXXXXX XXXXXXXXXX bmy_01408T0/1-1320 GGERILKMRE GDELCGQEEA FRTWAKKVFK AACDVFCVGD DVNIEKANNS BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 GGERILKMRE GDELCGQEEA FRTWAKKVFK AACDVFCVGD DVNIEKANNS ENSBTAP00000011690/1-1325 GGERILKMRE GDELCGQEEA FRTWAKKVFK AACDVFCVGD DVNIEKANNS 1001 1050 ENSTTRP00000002293/1-1466 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01408T0/1-1320 LISNDRSWKR NKFRLTYMAE APELTQGLSN VHKKRVSAAR LLSRQNLQSP BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 LISNDRSWKR NKFRLTFVAE APELTQGLSN VHKKRVSAAR LLSRQNLQSP ENSBTAP00000011690/1-1325 LISNDRSWKR NKFRLTYVAE APELTQGLSS VHKKRVSAAR LLSRQNLQSP 1051 1100 ENSTTRP00000002293/1-1466 XXXRSTIFVR LHTNGNQELQ YQPGDHLGVF PGNHEDLVNA LIERLEDAPP bmy_01408T0/1-1320 KSSRSTIFVR LHTNGNQELQ YQPGDHLGVF PGNHEDLVNA LIERLEDAPP BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 KSSRSTIFVR LHTNGSQELQ YQPGDHLGVF PGNHEDLVNA LIERLEDAPP ENSBTAP00000011690/1-1325 KSSRSTIFVR LHTNGSQELQ YQPGDHLGVF PGNHEDLVNA LIERLEDAPP 1101 1150 ENSTTRP00000002293/1-1466 VNQLVKVELL EERNTALGVI SNWTDEHRLP PCTIFQAFKY YLDITTPPTP bmy_01408T0/1-1320 VNQLVKVELL EERNTALVTG PMSIASHPAP SSR------- --PSGTTWIS BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 VNQMVKVELL EERNTALGVI SNWTDELRLP PCTIFQAFKY YLDITTPPTP ENSBTAP00000011690/1-1325 ANQLVKVELL EERNTALGVI SNWTDEHRLP PCTIFQAFKY YLDITTPPTP 1151 1200 ENSTTRP00000002293/1-1466 LQLQQFASLA TSEKEKQRLL VLSKGLQEYE EWKWGRNPNI VEVLEEFPSI bmy_01408T0/1-1320 PRLQRHCSCS MRKR------ --SSGLQEYE EWKWGRNPNI VEVLEEFPSI BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 LQLQQFASLA TSEKEKQRLL VLSKGLQEYE EWKWGKNPTI VEVLEEFPSI ENSBTAP00000011690/1-1325 LQLQQFASLA TSEKEKQRLL VLSKGLQEYE EWKWGKNPTI VEVLEEFPSI 1201 1250 ENSTTRP00000002293/1-1466 QMPATLLLTQ LSLLQPRYYS ISSSPDMYPD EVHLTVAVVS YRTRDGEGPI bmy_01408T0/1-1320 QMPSTLLLTQ LSLLQPRYYS ISSSPDMYPD EVHLTVAIVS YRTRDGEGPI BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 QMPATLLLTQ LSLLQPRYYS ISSSPDMYPD EVHLTVAIVS YRTRDGEGPI ENSBTAP00000011690/1-1325 QMPSTLLLTQ LSLLQPRYYS ISSSPDMYPD EVHLTVAIVS YRTRDGEGPI 1251 1300 ENSTTRP00000002293/1-1466 HHGVCSSWLN RIQADEVVPC FVRGAPSFHL P--------- ---------- bmy_01408T0/1-1320 HHGVCSSWLN QIQADEVVPC FRPASTCPEI PKCPVSWLAR AQALPLSEAS BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 HHGVCSSWLN RIQADELVPC FVRGAPSFHL P--------- ---------- ENSBTAP00000011690/1-1325 HHGVCSSWLN RIQADEVVPC FVRGAPSFHL P--------- ---------- 1301 1350 ENSTTRP00000002293/1-1466 ---------- ----RNPQVP C--------- ILVGPGTGIA PFRSFWQQ-- bmy_01408T0/1-1320 GSNGNLISNT KYIYRLPQGP CTSTPVARAK VLSSPGTTSC PPKSGIRAVG BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 ---------- ----RNPQVP C--------- ILVGPGTGIA PFRSFWQQ-- ENSBTAP00000011690/1-1325 ---------- ----QNPQVP C--------- ILVGPGTGIA PFRSFWQQ-- 1351 1400 ENSTTRP00000002293/1-1466 RQFDIQHKGM SPCPMVLVFG CRQSKIDHIY REETLQAKSK GVFRELYTAY bmy_01408T0/1-1320 DRRSSRSPGM SPSPMVLVFG CRQSKIDHIY REETLQAKSK GVFRELYTAY BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 RQFDIQHKGM NPCPMVLVFG CRQSKIDHIY REETLQAKNK GVFRELYTAY ENSBTAP00000011690/1-1325 RQFDIQHKGM SPCPMVLVFG CRQSKIDHIY REETLQAKSK GVFRELYTAY 1401 1450 ENSTTRP00000002293/1-1466 SREPDKPKKY VQDILQEQLA EPVYRALKEQ GGHIYVCGDV TMAADVLKAM bmy_01408T0/1-1320 SREPDKPKKY VQDILQEQLA EPVYQALKEQ GGHIYVCGDV TMAADVLKAI BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 SREPDKPKKY VQDILQEQLA ESVYRALKEQ GGHIYVCGDV TMAADVLKAI ENSBTAP00000011690/1-1325 SREPDKPK-- ---------- ---------- ---------- ---------- 1451 1500 ENSTTRP00000002293/1-1466 QRIMTQQGKL SVEDAGMFIS RLRDDNRYHE DIFGVTLRTY EVTNRLRSES bmy_01408T0/1-1320 QRIMTQQGKL SVEDAGVFIS RLRDDNRYHE DIFGVTLRTY EVTNRLRSES BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 QRIMTQQGKL SAEDAGVFIS RMRDDNRYHE DIFGVTLRTY EVTNRLRSES ENSBTAP00000011690/1-1325 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSTTRP00000002293/1-1466 IAFIEESKKG TDEVFSS--- ---------- ---------- ---------- bmy_01408T0/1-1320 IAFIEESKKD TDEWMAPHCT RPGWLQVLYA RTLLNLSFGP ARGPCSASCP BACU013591/1-343 ---------- ---------- ---------- ---------- ---------- ENSP00000337459/1-1468 IAFIEESKKD TDEVFSS--- ---------- ---------- ---------- ENSBTAP00000011690/1-1325 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSTTRP00000002293/1-1466 ---------- ---------- ---------- ----- bmy_01408T0/1-1320 VAVSWPSSPG FSPLSGFLAL LGFLLEFSCC SAMPS BACU013591/1-343 ---------- ---------- ---------- ----- ENSP00000337459/1-1468 ---------- ---------- ---------- ----- ENSBTAP00000011690/1-1325 ---------- ---------- ---------- -----