KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:35 2014 Check: 00 .. Name: ENSP00000292246/1-660 Len: 683 Check: 3838 Weight: 1.00 Name: ENSBTAP00000011710/1-553 Len: 683 Check: 6522 Weight: 1.00 Name: ENSTTRP00000012560/1-600 Len: 683 Check: 2030 Weight: 1.00 Name: BACU015676/1-614 Len: 683 Check: 6771 Weight: 1.00 Name: bmy_03316T0/1-352 Len: 683 Check: 8677 Weight: 1.00 // 1 50 ENSP00000292246/1-660 MKVTLSALDT SESSFTPLVV IELAQDVKEE TKEWLKNRII AKKKDGGAQL ENSBTAP00000011710/1-553 ---------- ---------- ---------- ---------- ------GAQL ENSTTRP00000012560/1-600 ---------- ---------- ---------- ---------- ---------- BACU015676/1-614 MKVTLSALDT HESSFTPLVV IELAQDVKEE TKDWLKNRII GRKKDGGAQL bmy_03316T0/1-352 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000292246/1-660 LFRPLLNKYE QETLENQNLY LVGASKIRML LGAEAVGLVK ECNDNTMRAF ENSBTAP00000011710/1-553 SFRPLLNKYE KETLENQNLY LVGASKIRLL LGAEAVGLVK ECSDNTMRAF ENSTTRP00000012560/1-600 --------YE KETLENQNLY -VGASRIRLL LGAEAVGLVK ECSDNTMRAF BACU015676/1-614 LFRPLLNKYE KETLENQNLY LVGASRIRLL LGAEAVGLVK ECSDNTMRAF bmy_03316T0/1-352 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000292246/1-660 TYRTRQNFKG FDDNNDDFLT MAECQFIIKH ELENLRAKDE KMIPGYPQAK ENSBTAP00000011710/1-553 TYGTRHSFKD FDDDNDDFLS MAERQFIIKH ELENLRARDE KMIPGYPQAK ENSTTRP00000012560/1-600 MYGTRHNFKG FDDDNDDFLT MAERQFIIKH ELESLRXXXX XXXXXXXXXX BACU015676/1-614 MYGTRHNFKG FDDDNDDFLT MAERQFIIKH ELESLRARDE KMIPGYPQAK bmy_03316T0/1-352 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000292246/1-660 LYPGKSL--- ---------- ---------- LRRLLTSGIV IQVFPLHDSE ENSBTAP00000011710/1-553 LYPGKSL--- ---------- ---------- LRRLLTSGIV VQVFPLHDNE ENSTTRP00000012560/1-600 XXXXXXX--- ---------- ---------- XRRLLTSGIV IQVFPLHDNE BACU015676/1-614 LYPGKSLYIY LLSSLKGLLP DMRIPCLWEQ VRRLLTSGIV IQVFPLHDNE bmy_03316T0/1-352 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000292246/1-660 ALKKLEDTWY TRFALKYQPI DSIRGYFGET IALYFGFLEY FTFALIPMAV ENSBTAP00000011710/1-553 ALKKLEDTWY TRFTLKFQPI DRIRGYFGET IALYFGFLEY FTFALIPMAI ENSTTRP00000012560/1-600 ALKKLEDTWY TRFTLKYQPI DSIRGYFGET IALYFGFLEY FTFALVPVAV BACU015676/1-614 ALKKLEDTWY TRFTLKYQPI DSIRGYFGET IALYFGFLEY FTFALIPVAV bmy_03316T0/1-352 ---------- ---------- -SIRGYFGET IALYFGFLEY FTFALIPVAV 251 300 ENSP00000292246/1-660 IGLPYYLFVW EDYDKYVIFA SFNLIWSTVI LELWKRGCAN MTYRWGTLLM ENSBTAP00000011710/1-553 IGLPYYLFAW EDYDKYVIFA SFNLIWSTVI LEVWKRGCAS MTYRWGTLVM ENSTTRP00000012560/1-600 LGLPYYLFVW ENYDKYVVFA SFNLIWSTVI LEVWKRGCAS MTYRWGTLVM BACU015676/1-614 LGLPYYLFVW ENYDKYVVFA SFNLIWSTVI LEVWKRGCAS MTYRWGTLVM bmy_03316T0/1-352 LGLPYYLFVW ENYDKYVVFA SFNLIWSTVI LEVWKRGCAS MTYRWGTLVM 301 350 ENSP00000292246/1-660 KRKFEEPRPG FHGVLGINSI TGKEEPLYPS YKRQLRIYLV SLPFVCLCLY ENSBTAP00000011710/1-553 KRKFEEPRPG YHGVLGINPV TGREEPLYPS YKRQLRIYLV SLPFVCLCLY ENSTTRP00000012560/1-600 KRQFEEPRPG YHGVLGINAV TGREEPLYPS YKRQLRIYLV SLPFVCLCLY BACU015676/1-614 KRQFEEPRPG YHGVLGINSV TGREEPLYPS YKRQLRIYLV SLPFVCLCLY bmy_03316T0/1-352 KRQFEEPRPG YHGVLGINSV TGREEPLYPS YKRQLRIYLV SLPFVCLCLY 351 400 ENSP00000292246/1-660 FSLYVMMIYF DMEVWALGLH ENSGSEWTSV LLYVPSIIYA IVIEIMNRLY ENSBTAP00000011710/1-553 FSLFVMMIYF DMEAWALGLH EDSGSEWTSI LLYVPSIIYA IVIEIMNRLY ENSTTRP00000012560/1-600 FSLFVMMIYF DMEAWALDLH ENSRSEWTSI LLYVPSIIYA IVIEIMNRLY BACU015676/1-614 SSLFVMMIYF DMEAWALDLH ENSRSEWSSI LLYVPSIIYA IVIEIMNRLY bmy_03316T0/1-352 SSLFVMMIYF DMEAWALDLH ENSRSEWTSI LLYVPSIIYA IVIEIMNRLY 401 450 ENSP00000292246/1-660 RYAAEFLTSW ENHRLESAYQ NHLILKVLVF NFLNCFASLF YIAFVLKDMK ENSBTAP00000011710/1-553 RYAAEFLTSW ENHRLESAYQ NHLILKVLVF NFLNCFASLF YIAFVLRDMK ENSTTRP00000012560/1-600 RYAAEFLTSW ENHRLESAYQ NHLILKVLVF NFLNCFASLF YIAFVLRDMK BACU015676/1-614 RYAAEFLTSW ENHRLESAYQ NHLILKVLVF NFLNCFASLF YIAFVLRDMK bmy_03316T0/1-352 RYAAEFLTSW ENHRLESAYQ NHLILKVLVF NFLNCFASLF YIAFVLRDMK 451 500 ENSP00000292246/1-660 LLRQSLATLL ITSQILNQIM ESFLPYWLQR KHGVRVKRKV QALKADIDAT ENSBTAP00000011710/1-553 LLRQSLATLL ITSQILNQIV ESLLPYWLQK KHHVRVKKKV EALKADIDAT ENSTTRP00000012560/1-600 LLRQSLATLL ITSQIFNQIV ESLLPYWLQK KQHVKVKKKV QALKADIDAT BACU015676/1-614 LLRQSLATLL ITSQIFNQIV ESLLPYWLQK KQHVKVKKKV QALKADIDAT bmy_03316T0/1-352 LLRQSLATLL ITSQIFNQIV ESLLPYWLQK KQHVKVKKKV QALKADIDAT 501 550 ENSP00000292246/1-660 LYEQVILEKE MGTYLGTFDD YLELFLQFGY VSLFSCVYPL AAAFAVLNNF ENSBTAP00000011710/1-553 LYEQVVLEKE MGTYLGTFDD YLELFLQFGY VSLFSCVYPL AAAFAVLNNL ENSTTRP00000012560/1-600 LYEQVVLEKE MGTYLGTFDD YLELFLQFGY VSLFSCVYPL AAAFAVLNNL BACU015676/1-614 LYEQVVLEKE MGTYLGTFDD YLELFLQFGY VSLFSCVYPL AAAFAVLNNL bmy_03316T0/1-352 LYEQVVLEKD MGTYL----- ---------- ---------- ---------- 551 600 ENSP00000292246/1-660 TEVNSDALKM CRVFKRPFSE PSANIGVWQL AFETMSVISV VTNCALIGMS ENSBTAP00000011710/1-553 TEVNSDALKM CRVLKRPFSE PSASIGVWQL AFETMSVISV VTNCALIGMS ENSTTRP00000012560/1-600 TEVNSDALKM CRVFKRPFSE PSASIGVWQL AFETMSVISV VTNCALIGMS BACU015676/1-614 TEVNSDALKM CRVFKRPFSE PSASIGVWQL AFETMSVISV VTNCALIGMS bmy_03316T0/1-352 ---------- ---------- ---------L AFETMSVISV VTNCALIGMS 601 650 ENSP00000292246/1-660 PQVNAVFPES KADLILIVVA VEHALLALKF ILAFAIPDKP RHIQMKLARL ENSBTAP00000011710/1-553 PQVNALFPES KTDLILIVVA VE-------- ---------- ---------- ENSTTRP00000012560/1-600 PQVNALFPES KADLILIVVA VEHALLALKF ILAFAIPDKP RHIQMKLARL BACU015676/1-614 PQVNALFXXN LTSF------ ---------- ---------- ---------- bmy_03316T0/1-352 PQVNALFPES KADLILIVVA VE-------- ----GENELT AHLEVTLHF- 651 700 ENSP00000292246/1-660 EFESLEALKQ QQMKLVTENL KEEPMESGKE KAT ENSBTAP00000011710/1-553 ---------- ---------- ---------- --- ENSTTRP00000012560/1-600 -FSLEALKQQ QQMKHVAENL KEDWREGGKE EAP BACU015676/1-614 ---------- ---------- ---------- --- bmy_03316T0/1-352 ---------- ---------- ---------- ---