KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:44:36 2014  Check: 00 ..

 Name: ENSBTAP00000011723/1-194  Len:    245  Check:  8331  Weight:  1.00
 Name: ENSP00000333097/1-219     Len:    245  Check:  3750  Weight:  1.00
 Name: bmy_18387T0/1-201         Len:    245  Check:  4289  Weight:  1.00
 Name: ENSTTRP00000010719/1-204  Len:    245  Check:  1278  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000011723/1-194  MSAGARGPAP EGPRRPRGRP SCPPPPRAAM DAAPELLRVP PAELLDDVLR 
ENSP00000333097/1-219     ---------- ---------M DPAPGVLDPR AAPPALLGTP QAEVLEDVLR 
bmy_18387T0/1-201         ---------- ---------- ---------M DAAPALLRAP PAEVLDDVLR 
ENSTTRP00000010719/1-204  ---------- ---------- ---------M DAAPALLRAP PA-VLEDVLL 


                          51                                                 100
ENSBTAP00000011723/1-194  EQFGPLPQQA TICRLKRLP- ---SSTQDVQ LVLERRRVAN AKERERIKNL 
ENSP00000333097/1-219     EQFGPLPQLA AVCRLKRLPS GGYSSTENLQ LVLERRRVAN AKERERIKNL 
bmy_18387T0/1-201         EQFGPLPQLA AICRLKRLPS GGYSSTEDLQ LVLERRRVAN AKERERIKNL 
ENSTTRP00000010719/1-204  -QFGPLPQLA AVCRLKRLPS GGYSSTEDLQ LVLERRRVAN AKERERIKNL 


                          101                                                150
ENSBTAP00000011723/1-194  NHGLAKLKAL VPFLPQNRKP SKVDILRGAT EYIQVLSDIL EEAKDSEKRD 
ENSP00000333097/1-219     NRGFARLKAL VPFLPQSRKP SKVDILKGAT EYIQVLSDLL EGAKDSKKQD 
bmy_18387T0/1-201         NRGFAKLKTL VPFLPQSRKP SKVDILKGAT EYIQ------ -------KQD 
ENSTTRP00000010719/1-204  NRGFAKLKAL VPFLPQSRKP SKVDILKGAT EYIQVLSDVL EGAKDSEKQD 


                          151                                                200
ENSBTAP00000011723/1-194  PDHQSYSSNT SELHTSSARE LSRII-QRAG CAMGLKNEKE GSWADGGSG- 
ENSP00000333097/1-219     PDEQSYSNNS SESHTSSARQ LSRNITQHIS CAFGLKNEEE GPWADGGSGE 
bmy_18387T0/1-201         PDHQNYSNNT SEPHMSLARE LSRNI-PHSG CAVGLKNEEE GSWADGGNGE 
ENSTTRP00000010719/1-204  PDHQNCSNNT SEPHMSLARE LSRN--THAG CAVGLKNEEE GSWADGGNGE 


                          201                                                250
ENSBTAP00000011723/1-194  ---------- ---------- ---------- ---------- ----- 
ENSP00000333097/1-219     PAHACRHSVM STTEIISPTR S------LDR FPEVE-LLSH RLPQV 
bmy_18387T0/1-201         SAHTCRQGAM STMGVISPAR SLVKCFFLDS HVDVQKLIMH PL-GM 
ENSTTRP00000010719/1-204  LAHTCRQGAM STMGVISPAR S------LDR FPEVE--LSH SLPGV