KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:39 2014 Check: 00 .. Name: ENSTTRP00000003203/1-1304 Len: 1304 Check: 7477 Weight: 1.00 Name: ENSBTAP00000011734/1-1304 Len: 1304 Check: 4210 Weight: 1.00 Name: bmy_04439T0/1-1258 Len: 1304 Check: 8405 Weight: 1.00 Name: ENSP00000335321/1-1304 Len: 1304 Check: 4490 Weight: 1.00 Name: BACU014107/1-299 Len: 1304 Check: 2785 Weight: 1.00 // 1 50 ENSTTRP00000003203/1-1304 MAKIAKTHED IEAQIREIQG KKAALDEAQG VGLDSTGYYD QEIYGGSDSR ENSBTAP00000011734/1-1304 MAKIAKTHED IEAQIREIQG KKAALDEAQG VGLDSTGYYD QEIYGGSDSR bmy_04439T0/1-1258 MAKIAKTHED IEAQIREIQG KKAALDEAQG VGLDSTGYYD QEIYGGSDSR ENSP00000335321/1-1304 MAKIAKTHED IEAQIREIQG KKAALDEAQG VGLDSTGYYD QEIYGGSDSR BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003203/1-1304 FAGYVTSIAA TELEDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011734/1-1304 FAGYVTSIAA TELEDDDDDY SSSTSLLGQK KPGYHAPVAL LNDIPQSTEQ bmy_04439T0/1-1258 FAGYVTSIAA TELEDDDDDY SSSTSLLGQK KPGYHAPVAL LNDIPQSTEQ ENSP00000335321/1-1304 FAGYVTSIAA TELEDDDDDY SSSTSLLGQK KPGYHAPVAL LNDIPQSTEQ BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000003203/1-1304 YDPFAEHRPP KIADREDEYK KHRRTMIISP ERLDPFADGG KTPDPKMNAR ENSBTAP00000011734/1-1304 YDPFAEHRPP KIADREDEYK KHRRTMIISP ERLDPFADGG KTPDPKMNAR bmy_04439T0/1-1258 YDPFAEHRPP KIADREDEYK KHRRTMIISP ERLDPFADGG KTPDPKMNAR ENSP00000335321/1-1304 YDPFAEHRPP KIADREDEYK KHRRTMIISP ERLDPFADGG KTPDPKMNAR BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000003203/1-1304 TYMDVMREQH LTKEEREIRQ QLAEKAKAGE LKVVNGAAAS QPPSKRKRRW ENSBTAP00000011734/1-1304 TYMDVMREQH LTKEEREIRQ QLAEKAKAGE LKVVNGAAAS QPPSKRKRRW bmy_04439T0/1-1258 TYMDVMREQH LTKEEREIRQ QLAEKAKAGE LKVVNGAAAS QPPSKRKRRW ENSP00000335321/1-1304 TYMDVMREQH LTKEEREIRQ QLAEKAKAGE LKVVNGAAAS QPPSKRKRRW BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000003203/1-1304 DQTADQTPGA TPKKLSSWDQ AETPGHTPSL RWDETPGRAK GSETPGATPG ENSBTAP00000011734/1-1304 DQTADQTPGA TPKKLSSWDQ AETPGHTPSL RWDETPGRAK GSETPGATPG bmy_04439T0/1-1258 DQTADQTPGA TPKKLSSWDQ AETPGHTPSL RWDETPGRAK GSETPGATPG ENSP00000335321/1-1304 DQTADQTPGA TPKKLSSWDQ AETPGHTPSL RWDETPGRAK GSETPGATPG BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000003203/1-1304 SKIWDPTPSH TPAGAATPGR GDTPGHATPG HGGATSSARK NRWDETPKTE ENSBTAP00000011734/1-1304 SKIWDPTPSH TPAGAATPGR GDTPGHATPG HGGATSSARK NRWDETPKTE bmy_04439T0/1-1258 SKIWDPTPSH TPAGAATPGR GDTPGHATPG HGGATSSARK NRWDETPKTE ENSP00000335321/1-1304 SKIWDPTPSH TPAGAATPGR GDTPGHATPG HGGATSSARK NRWDETPKTE BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000003203/1-1304 RDTPGHGSGW AETPRTDRGG DSIGETPTPG ASKRKSRWDE TPASQMGGST ENSBTAP00000011734/1-1304 RDTPGHGSGW AETPRTDRGG DSIGETPTPG ASKRKSRWDE TPASQMGGST bmy_04439T0/1-1258 RDTPGHGSGW AETPRTDRGG DSIGETPTPG ASKRKSRWDE TPASQMGGST ENSP00000335321/1-1304 RDTPGHGSGW AETPRTDRGG DSIGETPTPG ASKRKSRWDE TPASQMGGST BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000003203/1-1304 PVLTPGKTPI GTPAMNMATP TPGHIMSMTP EQLQAWRWER EIDERNRPLS ENSBTAP00000011734/1-1304 PVLTPGKTPI GTPAMNMATP TPGHIMSMTP EQLQAWRWER EIDERNRPLS bmy_04439T0/1-1258 PVLTPGKTPI GTPAMNMATP T--------- ---------- ---------- ENSP00000335321/1-1304 PVLTPGKTPI GTPAMNMATP TPGHIMSMTP EQLQAWRWER EIDERNRPLS BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000003203/1-1304 DEELDAMFPE GYKXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011734/1-1304 DEELDAMFPE GYKVLPPPAG YVPIRTPARK LTATPTPLGG MTGFHMQTED bmy_04439T0/1-1258 ---------- -------PAG YVPIRTPARK LTATPTPLGG MTGFHMQTED ENSP00000335321/1-1304 DEELDAMFPE GYKVLPPPAG YVPIRTPARK LTATPTPLGG MTGFHMQTED BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000003203/1-1304 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011734/1-1304 RTMKNVNDQP SGNLPFLKPD DIQYFDKLLV DVDESTLSPE EQKERKIMKL bmy_04439T0/1-1258 RTMKSVNDQP SGNLPFLKPD DIQYFDKLLV DVDESTLSPE EQKERKIMKL ENSP00000335321/1-1304 RTMKSVNDQP SGNLPFLKPD DIQYFDKLLV DVDESTLSPE EQKERKIMKL BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000003203/1-1304 XXXXXXXXXX XXXAALRQIT DKAREFGAGP LFNQILPLLM SPTLEDQERH ENSBTAP00000011734/1-1304 LLKIKNGTPP MRKAALRQIT DKAREFGAGP LFNQILPLLM SPTLEDQERH bmy_04439T0/1-1258 LLKIKNGTPP MRKAALRQIT DKAREFGAGP LFNQILPLLM SPTLEDQERH ENSP00000335321/1-1304 LLKIKNGTPP MRKAALRQIT DKAREFGAGP LFNQILPLLM SPTLEDQERH BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000003203/1-1304 LLVKVIDRIL YKLDDLVRPY VHKILVVIEP LLIDEDYYAR VEGREIISNL ENSBTAP00000011734/1-1304 LLVKVIDRIL YKLDDLVRPY VHKILVVIEP LLIDEDYYAR VEGREIISNL bmy_04439T0/1-1258 LLVKVIDRIL YKLDDLVRPY VHKILVVIEP LLIDEDYYAR VEGREIISNL ENSP00000335321/1-1304 LLVKVIDRIL YKLDDLVRPY VHKILVVIEP LLIDEDYYAR VEGREIISNL BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 601 650 ENSTTRP00000003203/1-1304 AKAAGLATMI STMRPDIDNM DEYVRNTTAR AFAVVASALG IPSLLPFLKA ENSBTAP00000011734/1-1304 AKAAGLATMI STMRPDIDNM DEYVRNTTAR AFAVVASALG IPSLLPFLKA bmy_04439T0/1-1258 AKAAGLATMI STMRPDIDNM DEYVRNTTAR AFAVVASALG IPSLLPFLKA ENSP00000335321/1-1304 AKAAGLATMI STMRPDIDNM DEYVRNTTAR AFAVVASALG IPSLLPFLKA BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 651 700 ENSTTRP00000003203/1-1304 VCKSKKSWQA RHTGIKIVQQ IAILMGCAIL PHLRSLVEII EHGLVDEQQK ENSBTAP00000011734/1-1304 VCKSKKSWQA RHTGIKIVQQ IAILMGCAIL PHLRSLVEII EHGLVDEQQK bmy_04439T0/1-1258 VCKSKKSWQA RHTGIKIVQQ IAILMGCAIL PHLRSLVEII EHGLVDEQQK ENSP00000335321/1-1304 VCKSKKSWQA RHTGIKIVQQ IAILMGCAIL PHLRSLVEII EHGLVDEQQK BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000003203/1-1304 VRTISALAIA ALAEAATPYG IESFDSVLKP LWKGIRQHRG KGLAAFLKAI ENSBTAP00000011734/1-1304 VRTISALAIA ALAEAATPYG IESFDSVLKP LWKGIRQHRG KGLAAFLKAI bmy_04439T0/1-1258 VRTISALAIA ALAEAATPYG IESFDSVLKP LWKGIRQHRG KGLAAFLKAI ENSP00000335321/1-1304 VRTISALAIA ALAEAATPYG IESFDSVLKP LWKGIRQHRG KGLAAFLKAI BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000003203/1-1304 GYLIPLMDAE YANYYTREVM LILIREFQSP DEEMKKIVLK VVKQCCGTDG ENSBTAP00000011734/1-1304 GYLIPLMDAE YANYYTREVM LILIREFQSP DEEMKKIVLK VVKQCCGTDG bmy_04439T0/1-1258 GYLIPLMDAE YANYYTREVM LILIREFQSP DEEMKKIVLK VVKQCCGTDG ENSP00000335321/1-1304 GYLIPLMDAE YANYYTREVM LILIREFQSP DEEMKKIVLK VVKQCCGTDG BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000003203/1-1304 VEANYIKTEI LPPFFKHFWQ HRMALDRRNY RQLVDTTVEL ANKVGAAEII ENSBTAP00000011734/1-1304 VEANYIKTEI LPPFFKHFWQ HRMALDRRNY RQLVDTTVEL ANKVGAAEII bmy_04439T0/1-1258 VEANYIKTEI LPPFFKHFWQ HRMALDRRNY RQLVDTTVEL ANKVGAAEII ENSP00000335321/1-1304 VEANYIKTEI LPPFFKHFWQ HRMALDRRNY RQLVDTTVEL ANKVGAAEII BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000003203/1-1304 SRIVDDLKDE XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011734/1-1304 SRIVDDLKDE AEQYRKMVME TIEKIMGNLG AADIDHKLEE QLIDGILYAF bmy_04439T0/1-1258 SRIVDDLKDE AEQYRKMVME TIEKIMGNLG AADIDHKLEE QLIDGILYAF ENSP00000335321/1-1304 SRIVDDLKDE AEQYRKMVME TIEKIMGNLG AADIDHKLEE QLIDGILYAF BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000003203/1-1304 XXXXXXDSVM LNGFGTVVNA LGKRVKPYLP QICGTVLWRL NNKSAKVRQQ ENSBTAP00000011734/1-1304 QEQTTEDSVM LNGFGTVVNA LGKRVKPYLP QICGTVLWRL NNKSAKVRQQ bmy_04439T0/1-1258 QEQTTEDSVM LNGFGTVVNA LGKRVKPYLP QICGTVLWRL NNKSAKVRQQ ENSP00000335321/1-1304 QEQTTEDSVM LNGFGTVVNA LGKRVKPYLP QICGTVLWRL NNKSAKVRQQ BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000003203/1-1304 AADLISRTAV VMKTCQEEKL MGHLGVVLYE YLGEEYPEVL GSILGALKAI ENSBTAP00000011734/1-1304 AADLISRTAV VMKTCQEEKL MGHLGVVLYE YLGEEYPEVL GSILGALKAI bmy_04439T0/1-1258 AADLISRTAV VMKTCQEEKL MGHLGVVLYE YLGEEYPEVL GSILGALKAI ENSP00000335321/1-1304 AADLISRTAV VMKTCQEEKL MGHLGVVLYE YLGEEYPEVL GSILGALKAI BACU014107/1-299 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000003203/1-1304 VNVIGMHKMT PPIKDLLPRL TPILKNRHEK VQENCIDLVG RIADRGAEYV ENSBTAP00000011734/1-1304 VNVIGMHKMT PPIKDLLPRL TPILKNRHEK VQENCIDLVG RIADRGAEYV bmy_04439T0/1-1258 VNVIGMHKMT PPIKDLLPRL TPILKNRHEK VQENCIDLVG RIADRGAEYV ENSP00000335321/1-1304 VNVIGMHKMT PPIKDLLPRL TPILKNRHEK VQENCIDLVG RIADRGAEYV BACU014107/1-299 -----MHKMT PPIKDLLPRL TPILKNRHEK VQENCIDLVG RIADRGAEYV 1051 1100 ENSTTRP00000003203/1-1304 SAREWMRICF ELLELLKAHK KAIRRATVNT FGYIAKAIGP HDVLATLLNN ENSBTAP00000011734/1-1304 SAREWMRICF ELLELLKAHK KAIRRATVNT FGYIAKAIGP HDVLATLLNN bmy_04439T0/1-1258 SAREWMRICF ELLELLKAHK KAIRRATVNT FGYIAKAIGP HDVLATLLNN ENSP00000335321/1-1304 SAREWMRICF ELLELLKAHK KAIRRATVNT FGYIAKAIGP HDVLATLLNN BACU014107/1-299 SAREWMRICF ELLELLKAHK KAIRRATVNT FGYIAKAIGP HDVLATLLNN 1101 1150 ENSTTRP00000003203/1-1304 LKVQERQNRV CTTVAIAIVA ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS ENSBTAP00000011734/1-1304 LKVQERQNRV CTTVAIAIVA ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS bmy_04439T0/1-1258 LKVQERQNRV CTTVAIAIVA ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS ENSP00000335321/1-1304 LKVQERQNRV CTTVAIAIVA ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS BACU014107/1-299 LKVQERQNRV CTTVAIAIVA ETCSPFTVLP ALMNEYRVPE LNVQNGVLKS 1151 1200 ENSTTRP00000003203/1-1304 LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTASA VVQHMSLGVY ENSBTAP00000011734/1-1304 LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTASA VVQHMSLGVY bmy_04439T0/1-1258 LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTASA VVQHMSLGVY ENSP00000335321/1-1304 LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTASA VVQHMSLGVY BACU014107/1-299 LSFLFEYIGE MGKDYIYAVT PLLEDALMDR DLVHRQTASA VVQHMSLGVY 1201 1250 ENSTTRP00000003203/1-1304 GFGCEDSLNH LLNYVWPNVF ETSPHVIQAV MGALEGLRVA IGPCRMLQYC ENSBTAP00000011734/1-1304 GFGCEDSLNH LLNYVWPNVF ETSPHVIQAV MGALEGLRVA IGPCRMLQYC bmy_04439T0/1-1258 GFGCEDSLNH LLNYVWPNVF ETSPHVIQAV MGALEGLRVA IGPCRMLQYC ENSP00000335321/1-1304 GFGCEDSLNH LLNYVWPNVF ETSPHVIQAV MGALEGLRVA IGPCRMLQYC BACU014107/1-299 GFGCEDSLNH LLNYVWPNVF ETSPHVIQAV MGALEGLRVA IGPCRMLQYC 1251 1300 ENSTTRP00000003203/1-1304 LQGLFHPARK VRDVYWKIYN SIYIGSQDAL IAHYPRIYND DKNTYIRYEL ENSBTAP00000011734/1-1304 LQGLFHPARK VRDVYWKIYN SIYIGSQDAL IAHYPRIYND DKNTYIRYEL bmy_04439T0/1-1258 LQGLFHPARK VRDVYWKIYN SIYIGSQDAL IAHYPRIYND DKNTYIRYEL ENSP00000335321/1-1304 LQGLFHPARK VRDVYWKIYN SIYIGSQDAL IAHYPRIYND DKNTYIRYEL BACU014107/1-299 LQGLFHPARK VRDVYWKIYN SIYIGSQDAL IAHYPRIYND DKNTYIRYEL 1301 1350 ENSTTRP00000003203/1-1304 DYIL ENSBTAP00000011734/1-1304 DYIL bmy_04439T0/1-1258 DYIL ENSP00000335321/1-1304 DYIL BACU014107/1-299 DYIL