KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:41 2014 Check: 00 .. Name: ENSP00000386280/1-343 Len: 443 Check: 252 Weight: 1.00 Name: ENSBTAP00000011742/1-345 Len: 443 Check: 4118 Weight: 1.00 Name: ENSTTRP00000016582/1-312 Len: 443 Check: 6928 Weight: 1.00 Name: bmy_01177T0/1-388 Len: 443 Check: 2853 Weight: 1.00 Name: BACU000876/1-340 Len: 443 Check: 2919 Weight: 1.00 // 1 50 ENSP00000386280/1-343 ---------- ---------- ---------- ---MDNQAER E-SEAGV--- ENSBTAP00000011742/1-345 ---------- ---------- ---------- ---RGNRDAR K-MQ-GE--- ENSTTRP00000016582/1-312 ---------- ---------- ---------- ---LDTQAGK ALCKAGV--- bmy_01177T0/1-388 MQGWCRFAKV TQSAFSLGTW LLLQKCLGI- ---LTTRDKR VPRASGIKEP BACU000876/1-340 MTLNLKNFGS SSAGPEVVAW GKMNTDLMPQ NLL-DNQAGK A-CKAGV--- 51 100 ENSP00000386280/1-343 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011742/1-345 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016582/1-312 ---------- ---------- ---------- ---------- ---------- bmy_01177T0/1-388 EAPNNALGLF TVDLEVTXML GRCREDLKSG GARTSRNHTG LTTNLAFPSA BACU000876/1-340 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000386280/1-343 -------GLQ RDEDDAPLCE DVELQDGDLS PEEKIFLREF PRLKEDLKGN ENSBTAP00000011742/1-345 -------FIH RDVDDILPCD DVKPQDSDLS AEERIFLEEF PNLKGELDMD ENSTTRP00000016582/1-312 -------SLQ RDEDDILPYE DVEWQDGDLS AEERIFLEEF PILKGELEVG bmy_01177T0/1-388 RLKIFISLIH RDEDDILPYE DVKRQDSDLS AEERIFLEEF PILKGELEVG BACU000876/1-340 -------GLQ RDEDDILPYE DVKWQDSDLS AEERIFLEEF PILKGELEVG 151 200 ENSP00000386280/1-343 IDKLRALADD IDKTHKKFTK ANMVATSTAV ISGVMSLLGL ALAPATGGGS ENSBTAP00000011742/1-345 IQKLHALADH IDTTHKTLTK TSVVANSITV VSGAMSILGL VLAPARAGGS ENSTTRP00000016582/1-312 IRKLHTLADQ VDTTHRTLTK TSIVANSIAV VSEVMSILGL VLAPAVAGGS bmy_01177T0/1-388 IRKLRALADH VDTTHRTLTK TSMVANSIAV VSGAMSILGL VLAPAIAGGS BACU000876/1-340 IRKLRALADH VDTTHRTFTK SSMVANSIAV VSGAMSILGL VLAPAIAGGS 201 250 ENSP00000386280/1-343 LLLSTAGQGL ATAAGVTSIV SGTLERSKNK EAQARAEDIL PTYDQEDRED ENSBTAP00000011742/1-345 LALSTAGRVL GTAGEVTSIL TNVLERFHSQ EAQAQVGSLM PSHGGKVR-- ENSTTRP00000016582/1-312 LVLSAAGRVL GKAGEVTSIL TNVLERFHSQ EAQAYVGSLV PTRAQEVR-- bmy_01177T0/1-388 LVLSAAGSVL GKAGEVTSIL TNVLERFHSQ EAQAYVGSLM PTRGHALPWL BACU000876/1-340 LVLSAAGRVL GKAGEVTSIL TNVLERFHSQ EAQAYVGSLM PTRGHALPWL 251 300 ENSP00000386280/1-343 EEEKADYVTA AGKIIYNLRN TLKYAKKNVR AFWKLRANPR LANATKRLLT ENSBTAP00000011742/1-345 -RTGVDYIMA AGKVIQNCRS TIEGVQKSIR AFQITKADPR LATATKHLLT ENSTTRP00000016582/1-312 -GAGAAYVLA AGKVVQDCES TVRISGKSIR -LQMARAT-R LAAA---LLT bmy_01177T0/1-388 WRAGAAYVVA AGKVVQNCES TIKDIQRSIR AFQIARAHPR LATAAKSLLT BACU000876/1-340 WRAGAAYVVA AGEVVQNCDS TIKDIQRSIR AFQIARAHPR LATAAKSLLT 301 350 ENSP00000386280/1-343 TGQVSSRSRV QVQKAFAGTT LAMTKNARVL GGVMSAFSLG YDLATLSKEW ENSBTAP00000011742/1-345 TGQVSARRSS QVQRAFGGTT LVMKTKARLL GSAMAGFSLS VDLASLLKDW ENSTTRP00000016582/1-312 TGV----SRE QVQR-FEGTV M---TKARLL GTAMAG--LL SGLASL-KDW bmy_01177T0/1-388 TGQVSARRSR QVQRAFEGTT LVMKTKARLL GTTMAGFSLS VGLAALLKDW BACU000876/1-340 TGQVSARRSR QVQRAFEGTT LVMKTKARLL GTAMAGFSLS LGLASLLKDW 351 400 ENSP00000386280/1-343 KHLKEGARTK FAEELRAKAL ELERKLTELT QLYKSLQQKV RSR-----AR ENSBTAP00000011742/1-345 KQLKEGARTE LAEELRAQAR ELERQLTQLT QRYESLQQRM RLCGPSWVAQ ENSTTRP00000016582/1-312 KQLKEGTKSE LAEELRAQAW ELERKLTEFT QCYESLQQKV RL------GA bmy_01177T0/1-388 KQLKEGAKSE LAEELRAQAW ELERKLAEFT QCYESLQQKL LF-------- BACU000876/1-340 KQLKEGATSE LAEELRAQAW ELERKLAEFT QCYESLQQKD FN-------- 401 450 ENSP00000386280/1-343 GVGKDLTGTC ETEAYWKELR EHVWMWL-WL CVCLCVCVYV QFT ENSBTAP00000011742/1-345 SGGKALTGFM GTGAYGRGDE EATSLYLVFL CVCVCVCVFS ETL ENSTTRP00000016582/1-312 GGGEALTGAY GTRVYGKGMR KP-------- ----CVCVEF AW- bmy_01177T0/1-388 ---------- ---------- ---------- ---------- --- BACU000876/1-340 ---------- ---------- ---------M VIANCYPIY- ---