KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:42 2014 Check: 00 .. Name: ENSP00000325863/1-708 Len: 769 Check: 6407 Weight: 1.00 Name: ENSBTAP00000011748/1-708 Len: 769 Check: 4735 Weight: 1.00 Name: BACU013751/1-714 Len: 769 Check: 5152 Weight: 1.00 Name: ENSTTRP00000010020/1-707 Len: 769 Check: 491 Weight: 1.00 Name: bmy_15513T0/1-432 Len: 769 Check: 8115 Weight: 1.00 // 1 50 ENSP00000325863/1-708 MSTADALDDE NTFKILVATD IHLGFMEKDA VRGNDTFVTL DEILRLAQEN ENSBTAP00000011748/1-708 MSPADALDDE NTFKILVATD IHLGFMEKDA VRGNDTFVTL DEILRLAQEN BACU013751/1-714 ---------- ---------- -----MEKDA VRGNDTFVTL DEILRLAQEN ENSTTRP00000010020/1-707 MSPADALDDE NTFKILVATD IHLGFMEKDA VRGNDTFVTL DEILRLAQEN bmy_15513T0/1-432 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000325863/1-708 EVDFILLGGD LFHENKPSRK TLHTCLELLR KYCMGDRPVQ FEILSDQSVN ENSBTAP00000011748/1-708 DVDFILLGGD LFHENKPSRK TLHTCLELLR KYCMGDRPVQ FEILSDQSVN BACU013751/1-714 DVDFILLGGD LFHENKPSRK TVHNCLELLR KYCMGDRPVQ FEIISDQSVN ENSTTRP00000010020/1-707 DVDFILLGGD LFHENKPSRK TIHNCLELLR KYCMGDRPVQ FEIISDQSVN bmy_15513T0/1-432 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000325863/1-708 FGFSKFPWVN YQDGNLNISI PVFSIHGNHD DPTGADALCA LDILSCAGFV ENSBTAP00000011748/1-708 FGFSKFPWVN YQDGNLNISV PVFSIHGNHD DPTGADALCA LDILSCAGFV BACU013751/1-714 FGFSKFPWVN YEDGNLNISI PVFSIHGNHD DPTGADALCA LDILSCAGFV ENSTTRP00000010020/1-707 FGFSKFPWVN YEDSNLNISI PVFSIHGNHD DPTGADLLCA LDILSCAGFV bmy_15513T0/1-432 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000325863/1-708 NHFGRSMSVE KIDISPVLLQ KGSTKIALYG LGSIPDERLY RMFVNKKVTM ENSBTAP00000011748/1-708 NHFGRSMSVE KIDISPVLLQ KGSTKIALYG LGSIPDERLY RMFVNKKVTM BACU013751/1-714 NHFGRSVSVE KIDISPVLLQ KGSTKIALYG LGSIPDERLY RMFVNKKVTM ENSTTRP00000010020/1-707 NHFGRSMSVE KIDISPVLLQ KGSTKIALYG LGSIPDERLY RMFVNKKVTM bmy_15513T0/1-432 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000325863/1-708 LRPKEDENSW FNLFVIHQNR SKHGSTNFIP EQFLDDFIDL VIWGHEHECK ENSBTAP00000011748/1-708 LRPKEDENSW FNLFVIHQNR SKHGSTNFIP EQFLDDFIDL VIWGHEHECK BACU013751/1-714 LRPKEDGNSW FNLFVIHQNR SKHGSTNFIP EQFLDDFIDL VIWGHEHECK ENSTTRP00000010020/1-707 LRPKEDGNSW FNLFVIHQNR SKHGSTNFIP EQFLDDFIDL VIWGHEHECK bmy_15513T0/1-432 ---------- ---------- SKHGSTNFIP EQFLDDFIDL VIWGHEHECK 251 300 ENSP00000325863/1-708 IAPTKNEQQL FYISQPGSSV VTSLSPGEAV KKHVGLLRIK GRKMNMHKIP ENSBTAP00000011748/1-708 IAPTKNEQQL FYVSQPGSSV VTSLSPGEAV KKHIGLLRIK GRKMNMQKIP BACU013751/1-714 IAPTKNEQQL FYVSQPGSSV VTSLSPGEAV KKHVGLLRIK ERKMNMQKIP ENSTTRP00000010020/1-707 IAPTKNEQQL FYVSQPGSSV VTSLSPGEAV KKHVGLLRIK GRKMNMQKIP bmy_15513T0/1-432 IAPTKNEQQL FYVSQPGSSV VTSLSPGEAV KKHVGLLRIK GRKMNMQKIP 301 350 ENSP00000325863/1-708 LHTVRQFFME DIVLANHPDI FNPDNPKVTQ AIQSFCLEKI EEMLENAERE ENSBTAP00000011748/1-708 LRTVRQFFME DVVLADHPDI FNPDNPKVTQ VIQNFCLEKV EEMLENAERE BACU013751/1-714 LHTVRQFFME DVVLADHPDI FNPDNPKVTQ VIQSFCLEKI EEMLENAERE ENSTTRP00000010020/1-707 LRTVRQFFME DVVLAKHPDI FNPDNPKVTQ AIQSFCLEKI EEMLENAERE bmy_15513T0/1-432 LHTVRQFFME DVVLADHPDI FNPDNPKVTQ VIQSFCLEK- ---------- 351 400 ENSP00000325863/1-708 RLGNSHQPEK PLVRLRVDYS GGFEPFSVLR FSQKFVDRVA NPKDIIHFFR ENSBTAP00000011748/1-708 RLGNSQQPEK PLIRLRVDYS GGFEPFSVLR FSQKFVDRVA NPKDVIHFFR BACU013751/1-714 RLGNSRQPEK PLIRLRVDYS GGFEPFSVLR FSQKFVDRVA NPKDVIHFFR ENSTTRP00000010020/1-707 RLGNSRQPEK PLIRLRVDYS GGFEPFSVLR FSQKFVDRVA NPKDVIHFFR bmy_15513T0/1-432 ---------- ------VDYS GGFEPFSVLR FSQKFVDRVA NPKDVIHFFR 401 450 ENSP00000325863/1-708 HREQKEKTGE EINFGKLITK PSEGTTLRVE DLVKQYFQTA EKNVQLSLLT ENSBTAP00000011748/1-708 HREQKENTGE EINFGKFISK PSEGTTLRVE DLVKQYFQTA EKNVQLSLLT BACU013751/1-714 RREQKEDTGE EINFGKFITK PSEGTTLRVE DLVKQYFQTA EKNVQLSLLT ENSTTRP00000010020/1-707 RREQKEDTGE EINFGKFITK PSEVTTLRVE DLVKQYFQTA EKNVQLSLLT bmy_15513T0/1-432 RREQKEDTGE EINFGKFITK PSEGTTLRVE DLVKQYFQTA EKNVQLSLLT 451 500 ENSP00000325863/1-708 ERGMGEAVQE FVDKEEKDAI EELVKYQLEK TQRFLKERHI DALEDKIDEE ENSBTAP00000011748/1-708 ERGMGEAVQE FVDKEEKDAI EELVKYQLEK TQRFLKERHI DALEDKIDEE BACU013751/1-714 ERGMGEAVQE FVDKEEKDAI EELVKYQLEK TQRFLKERHT DALEDKIDEE ENSTTRP00000010020/1-707 ERGMGEAVQE FVDKEEKDAI EELVKYQLEK TQRFLKERHT DALEDKIDEE bmy_15513T0/1-432 ERGMGEAVQE FVDKEEKDAI EELVKYQLEK TQRFLKERHT DALEDKIDEE 501 550 ENSP00000325863/1-708 VRRFRETRQK NTNEEDDEVR EAMTRARALR SQSEESASAF SADDLMSIDL ENSBTAP00000011748/1-708 VRRFRESRQK NTNEEDDEVR EAMSRARALR SQSEDAASAL TAEDLMSIDL BACU013751/1-714 VRRFRESRQK --NEEDDEVR EAMSRARALR SQSEEAASAF SADDLMSIDL ENSTTRP00000010020/1-707 VRRFRESRQK --NEEDDEVR EAMSRARALR SQSEEAASAF SADDLMSIDL bmy_15513T0/1-432 VRRFRESRQK --NEEDDEVR EAMSRARALR SQSEEAASAF SADDLMSIDL 551 600 ENSP00000325863/1-708 AEQMANDSDD SISAATNKGR GRGRGRRGGR GQNSASRGGS QRGRADTGLE ENSBTAP00000011748/1-708 AEQMADDSDD SIKAAANKGR GRGRGQRGGR GQNSMSRRGS QRGRAGTSLE BACU013751/1-714 AEQMADDPDD SITAAANKGR GRGRGRRGGR GQNPVSRGGS QRER------ ENSTTRP00000010020/1-707 AEQMADDSDD SITAAANKGR GRGRGQRGGR GQNPVSRGGS QRGRAGAALE bmy_15513T0/1-432 AEQMADDSDD SITAAANRGR GRGRGRRGGR GQNPVSRGGS QRGR------ 601 650 ENSP00000325863/1-708 TSTRSRNSKT AVSASRNMSI IDAFKSTRQQ PSRNVTTKNY SEVIEVDESD ENSBTAP00000011748/1-708 ISTQGRGSKA TTSTSRNMSI IDAFKSTRQQ PSRNVATKNY TEVIEVDESD BACU013751/1-714 ---------- ---------- --AFKAARQQ PSQNVATKNY SEVIVVDESD ENSTTRP00000010020/1-707 TSTRGRSSKA TMSTSRNMSI IDAFKAARQQ PSQNVATKNY SEVIVVGESD bmy_15513T0/1-432 ---------- ---------- --AFKAARQQ PSQNVATKNY SEVIVVDESD 651 700 ENSP00000325863/1-708 VEEDIFPTTS KTDQRWSST- SSSKIMSQSQ VSKGVDFESS E--------- ENSBTAP00000011748/1-708 TEEDVFLTTF KTDQRGSSTS SSSKPMSQSQ ITKGVDFESD E--------- BACU013751/1-714 TEEDIFPTTS KADQRWLSTS SSSKHMSRSH NTKGVDFESD EKFSHSYNEE ENSTTRP00000010020/1-707 TEEDIFPTTS KADQRWLSTS SSSKHTSRSK ITKGVDFESD E--------- bmy_15513T0/1-432 TEEDIFPTTS KADQRWLSTS SSSKHMSRSH ITKGVDFESD E--------- 701 750 ENSP00000325863/1-708 --------DD DDDPFMNTSS LRRNRR---- ---------- ---------- ENSBTAP00000011748/1-708 ---------D DDDPFMNLSC LRRNRR---- ---------- ---------- BACU013751/1-714 LVALNLLMNN LQNQWVNNCR LDQGQSEVES MRPPQDRGHL SPAVREPDKR ENSTTRP00000010020/1-707 --------DD DDDPFMNLSS VRRNRR---- ---------- ---------- bmy_15513T0/1-432 --------DD DDDPFMNLSS LRRNRR---- ---------- ---------- 751 800 ENSP00000325863/1-708 ---------- --------- ENSBTAP00000011748/1-708 ---------- --------- BACU013751/1-714 PIRAALPTLP TLEPSLIRY ENSTTRP00000010020/1-707 ---------- --------- bmy_15513T0/1-432 ---------- ---------