KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:46 2014 Check: 00 .. Name: ENSTTRP00000005378/1-538 Len: 548 Check: 9909 Weight: 1.00 Name: bmy_09300T0/1-472 Len: 548 Check: 5300 Weight: 1.00 Name: ENSP00000362680/1-536 Len: 548 Check: 6127 Weight: 1.00 Name: BACU019050/1-546 Len: 548 Check: 1248 Weight: 1.00 Name: ENSBTAP00000011767/1-542 Len: 548 Check: 2599 Weight: 1.00 // 1 50 ENSTTRP00000005378/1-538 MGSNKSKPKD ASQRRRSLEP ADNTH----- -GGGGGAFPT SQTPSKPASA bmy_09300T0/1-472 ---------- ---------- ---------- ----GGAFPT SQTPSKPASA ENSP00000362680/1-536 MGSNKSKPKD ASQRRRSLEP AENVH----- -GAGGGAFPA SQTPSKPASA BACU019050/1-546 MGSNKSKPKD ASQRRRSLEP ADNTH--GGG GGGGGGAFPT SQTPSKPASA ENSBTAP00000011767/1-542 MGSNKSKPKD ASQRRRSLES AENTHGGGGG GGGGGGAFPS SQTPSKPASS 51 100 ENSTTRP00000005378/1-538 DGHRGPSTAF APAAAEPKLF GGFNSSDTVT SPQRAGPLAG GVTTFVALYD bmy_09300T0/1-472 DGHRGPSTAF APAAAEPKLF GGFNSSDTVT SPQRAGPLAG GVTTFVALYD ENSP00000362680/1-536 DGHRGPSAAF APAAAEPKLF GGFNSSDTVT SPQRAGPLAG GVTTFVALYD BACU019050/1-546 DGHRGPSMAF APAAAEPKLF GGFNSSDTVT SPQRAGPLAG GVTTFVALYD ENSBTAP00000011767/1-542 DGHRGPNTAF APAAAEPKLF GGFNSSDTVT SPQRAGPLSG GVTTFVALYD 101 150 ENSTTRP00000005378/1-538 YESRTETDLS FKKGERLQIV NNTRKVDVRE GDWWLAHSLS TGQTGYIPSN bmy_09300T0/1-472 YESRTETDLS FKKGERLQIV NNTRKVDVRE GDWWLAHSLS TGQTGYIPSN ENSP00000362680/1-536 YESRTETDLS FKKGERLQIV NNT------E GDWWLAHSLS TGQTGYIPSN BACU019050/1-546 YESRTETDLS FKKGERLQIV NNTRKVDVRE GDWWLAHSLS TGQTGYIPSN ENSBTAP00000011767/1-542 YESRTETDLS FKKGERLQIV NNT------E GDWWLAHSLS TGQTGYIPSN 151 200 ENSTTRP00000005378/1-538 YVAPSDSIQA EEWYFGKITR RESERLLLNA ENPRGTFLVR ESETTKGAYC bmy_09300T0/1-472 YVAPSDSIQA EEWYFGKITR RESERLLLNA ENPRGTFLVR ESETTKGAYC ENSP00000362680/1-536 YVAPSDSIQA EEWYFGKITR RESERLLLNA ENPRGTFLVR ESETTKGAYC BACU019050/1-546 YVAPSDSIQA EEWYFGKITR RESERLLLNV ENPRGTFLVR ESETTKGAYC ENSBTAP00000011767/1-542 YVAPSDSIQA EEWYFGKITR RESERLLLNA ENPRGTFLVR ESETTKGAYC 201 250 ENSTTRP00000005378/1-538 LSVSDFDNAK GLNVKHYKIR KLDSGGFYIT SRTQFNSLQQ LVAYYSKHAD bmy_09300T0/1-472 LSVSDFDNAK GLNVKHYKIR KLDSGGFYIT SRTQFNSLQQ LVAYYSKHAD ENSP00000362680/1-536 LSVSDFDNAK GLNVKHYKIR KLDSGGFYIT SRTQFNSLQQ LVAYYSKHAD BACU019050/1-546 LSVSDFDNAK GLNVKHYKIR KLDSGGFYIT SRTQFNSLQQ LVAYYSKHAD ENSBTAP00000011767/1-542 LSVSDFDNAK GLNVKHYKIR KLDSGGFYIT SRTQFNSLQQ LVAYYSKHAD 251 300 ENSTTRP00000005378/1-538 GLCHRLTTVC PMSKPQTQGL AKDAWEIPRE SLRLEVKLGQ GCFGEVWMGT bmy_09300T0/1-472 GLCHRLTTVC PTSKPQTQGL AKDAWEIPRE SLRLEVKLGQ GCFGEVWMGT ENSP00000362680/1-536 GLCHRLTTVC PTSKPQTQGL AKDAWEIPRE SLRLEVKLGQ GCFGEVWMGT BACU019050/1-546 GLCHRLTTVC PTSKPQTQGL AKDAWEIPRE SLRLEVKLGQ GCFGEVWMGT ENSBTAP00000011767/1-542 GLCHRLTTVC PTSKPQTQGL AKDAWEIPRE SLRLEVKLGQ GCFGEVWMGT 301 350 ENSTTRP00000005378/1-538 WNGATRVAIK TLKPGTMSPE AFLQEAQVMK KLRHEKLVQL YAVVSEEPIY bmy_09300T0/1-472 WNGATRVAIK TLKPGTMSPE AFLQEAQVMK KLRHEKLVQL YAVVSEEPIY ENSP00000362680/1-536 WNGTTRVAIK TLKPGTMSPE AFLQEAQVMK KLRHEKLVQL YAVVSEEPIY BACU019050/1-546 WNGTTRVAIK TLKPGTMSPE AFLQEAQVMK KLRHEKLVQL YAVVSEEPIY ENSBTAP00000011767/1-542 WNGTTRVAIK TLKPGTMSPE AFLQEAQVMK KLRHEKLVQL YAVVSEEPIY 351 400 ENSTTRP00000005378/1-538 IVTEYMSKGS LLDFLKGETG KYLRLPQLVD MAAQIASGMA YVERMNYVHR bmy_09300T0/1-472 IVTEYMSKGS LLDFLKGETG KYLRLPQLVD MAAQIASGMA YVERMNYVHR ENSP00000362680/1-536 IVTEYMSKGS LLDFLKGETG KYLRLPQLVD MAAQIASGMA YVERMNYVHR BACU019050/1-546 IVTEYMSKGS LLDFLKGETG KYLRLPQLVD MAAGIASGMA YVERMNYVHR ENSBTAP00000011767/1-542 IVTEYMSKGS LLDFLKGETG KYLRLPQLVD MAAQIASGMA YVERMNYVHR 401 450 ENSTTRP00000005378/1-538 DLRAANILVG ESLVCKVADF GLARLIEDNE YTARQG-KFS I---MPPAAL bmy_09300T0/1-472 DLRAANILVG ESLVCKVADF GLARLIEDNE YTARQGAKFP IKWTAPEAAL ENSP00000362680/1-536 DLRAANILVG ENLVCKVADF GLARLIEDNE YTARQGAKFP IKWTAPEAAL BACU019050/1-546 DLRAANILVG ESLVCKVADF GLARLIEDNE YTARQGAKFP IKWTAPEAAL ENSBTAP00000011767/1-542 DLRAANILVG ESLVCKVADF GLARLIEDNE YTARQGAKFP IKWTAPEAAL 451 500 ENSTTRP00000005378/1-538 YGRFXXXXXX XXXXXXXXXX XXXXXVPYPG MVNREVLDQV ERGYRMPCPP bmy_09300T0/1-472 YGRFTIKSDV WSFGILLTEL TTKGRVPYP- -------DGE PRGAG-PGGE ENSP00000362680/1-536 YGRFTIKSDV WSFGILLTEL TTKGRVPYPG MVNREVLDQV ERGYRMPCPP BACU019050/1-546 YGRFTIKSDV WSFGILLTEL TTKGRVPYPG MVNREVLDQV ERGYRMPCPP ENSBTAP00000011767/1-542 YGRFTIKSDV WSFGILLTEL TTKGRVPYPG MVNREVLDQV ERGYRMPCPP 501 550 ENSTTRP00000005378/1-538 ECPESLHDLM CQCWRKDPEE RPTFEYLQAF LEDYFTSTEP QYQPGENL bmy_09300T0/1-472 GLPDALPARV SRVSA----- ---------- ---------- -------- ENSP00000362680/1-536 ECPESLHDLM CQCWRKEPEE RPTFEYLQAF LEDYFTSTEP QYQPGENL BACU019050/1-546 ECPESLHDLM CQCWRKDPEE RPTFEYLQAF LEDYFTSTEP QYQPGENL ENSBTAP00000011767/1-542 ECPESLHDLM CQCWRKDPEE RPTFEYLQAF LEDYFTSTEP QYQPGENL