KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:48 2014 Check: 00 .. Name: BACU012407/1-1198 Len: 1608 Check: 9674 Weight: 1.00 Name: ENSP00000315659/1-1577 Len: 1608 Check: 5351 Weight: 1.00 Name: bmy_14134T0/1-796 Len: 1608 Check: 6764 Weight: 1.00 Name: ENSTTRP00000011260/1-1597 Len: 1608 Check: 6556 Weight: 1.00 Name: ENSBTAP00000011772/1-1579 Len: 1608 Check: 7992 Weight: 1.00 // 1 50 BACU012407/1-1198 ---------- ---------- ---------- --------MR KERELEEKGH ENSP00000315659/1-1577 MEAGSVVRAI FDFCPSVSEE LPLFVGDIIE VLAVVDEFWL LGKKEDVTGQ bmy_14134T0/1-796 MEAGSVVRAI FDFCPSVSEE LPLFVGDVIE VLAVVDEFWL LGKKEDVTGQ ENSTTRP00000011260/1-1597 MEAGSVVRAI FDFCPSVSEE LPLFVGDVIE VLAVVDEFWL LGKKEDVTGQ ENSBTAP00000011772/1-1579 MEAGSVVRAI FDFCPSVSEE LPLFVGDIIE VLAVVDEFWL LGKKEDVTGQ 51 100 BACU012407/1-1198 WSSSWE---- ---------- ----CE---- --DCRSLQKR DVTALDGLYR ENSP00000315659/1-1577 FPSSFVEIVT IPSLKEGERL FVCICEFTSQ ELDNLPLHRG DLVILDGIPT bmy_14134T0/1-796 FPSSFVEVVT IPSLKEGERL FVCICEFTSL ELNSLSLHRG DLVVLDGTPT ENSTTRP00000011260/1-1597 FPSSFVEVVT IPSLKEGERL FVCICEFTSL ELNSLSLHRG DLVVLDGTPT ENSBTAP00000011772/1-1579 FPSSFVEVVT IPSLKEGERL YVCICEFTSL ELNSLPLHRG DLVILDGTLT 101 150 BACU012407/1-1198 EGDLDSR--- -----YQTTG QNQLYRKRHC GYW------- ---------- ENSP00000315659/1-1577 AGWLQGRSCW GARGFFPSSC VRELCLSSQS RQWHSQSALF QIPEYSMGQA bmy_14134T0/1-796 AGWLQGRSCW GARGFFPSSC VRELCLSSQS RQWHSQSALL QIPEYSMGQA ENSTTRP00000011260/1-1597 AGWLQGRSCW GARGFFPSSC VRELCLSSQS RQWHSQSALL QIPEYSMGQA ENSBTAP00000011772/1-1579 GGWLQGRNCW GARGFFPSSC VRELCLSSQS RQWHSQSALL QIPEYSMGQA 151 200 BACU012407/1-1198 ---------- ----DFEQSE ---------P S--------- ---------- ENSP00000315659/1-1577 RALMGLSAQL DEELDFREGD VITIIGVPEP GWFEGELEGR RGIFPEGFVE bmy_14134T0/1-796 RALMGLSAQL DEELDFREGD VITIIGVPEP GWFEGELEGR RGIFPEGFVE ENSTTRP00000011260/1-1597 RALMGLSAQL DEELDFREGD VITIIGVPEP GWFEGELEGR RGIFPEGFVE ENSBTAP00000011772/1-1579 RALMGLSAQL DEELDFREGD VITIIGIPEP GWFEGELDGR RGIFPEGFVE 201 250 BACU012407/1-1198 ------CMDN EESKESRKDC MYHGSVTPGC NDYK------ NSENVDYG-- ENSP00000315659/1-1577 LLGPLRTVDE SVSSGNQDDC IVNGEVDTPV GEEEIGPDED EEEPGTYGVA bmy_14134T0/1-796 LLGPLRTVDE SVSSGNCDDC ITNGEVDTNT GEER-QPEEE GEQPATYGIA ENSTTRP00000011260/1-1597 LLGPLRTVDE SVSSGNCDDC ITNGEVDTNT GEET--PEEE GEQPGTYGIA ENSBTAP00000011772/1-1579 LLGPLRTVDE SVSSGNCDDC ISNGEVDTST GEEK-EPEED SEQPGTYGIA 251 300 BACU012407/1-1198 -------NPN PATKDDS--- -FAGSPDVTW KAGGYGETNG CVNRKNLNRN ENSP00000315659/1-1577 LYRFQALEPN ELDFEVGDKI RILATLEDGW LEGSLKGRTG IFPYRFVKLC bmy_14134T0/1-796 LYRFQALEPN ELDFEVGDKI RILGTLEDGW LEGSLKGRTG IFPYRFVKLC ENSTTRP00000011260/1-1597 LYRFQALEPN ELDFE-SDKI RILGTLKDGW LERSLKGQTG IFPYRFVKLC ENSBTAP00000011772/1-1579 LYRFQALEPN ELDFEVGDKI RILGTLEDGW LEGSLKGRTG IFPYRFVKLC 301 350 BACU012407/1-1198 P----EDSKE TGQWTGYRGL DDS----VEN FGQLQHRHVD HRNFNYNLED ENSP00000315659/1-1577 PDTRVEETMA LPQEGSLARI PETSLDCLEN TLGVEEQRHE TSDHEAEEPD bmy_14134T0/1-796 PQARVEETMD LPQESSLTNI PDTSLDCLEN -LEVEGTRHE SPEYKAEKSN ENSTTRP00000011260/1-1597 PQTGVEETVD LPQESSLTNI PDTSLDCSED FLEVE--RHE SHEYXXXXXX ENSBTAP00000011772/1-1579 PQTRVEETMD LSQESDLTNI PDTPLDCSEN SLEAEGKRHE FHEYKPEKSN 351 400 BACU012407/1-1198 CK-------- ---------- ---------- ---------- ---------- ENSP00000315659/1-1577 CIISEAPTSP LGHLTSEYDT DRNSYQDEDT AGGPPRSPGV EWEMPLATDS bmy_14134T0/1-796 SVISETSTSP LEHLTSEYEE DKNSHWDTGT SEGPPRSTGS GHEQLLAKYS ENSTTRP00000011260/1-1597 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011772/1-1579 CVISETPTST LEHLTSECEE NKQSHWDTDP SGGPPGSPGA GHEQLLVKCS 401 450 BACU012407/1-1198 ---------- ---------- ----ETNFYY RGLNDLYHVP GNYTN----- ENSP00000315659/1-1577 PTSDPTEVVN GISSQPQVPF HPNLQKSQYY STVGGSHPHS EQYPDLLPLE bmy_14134T0/1-796 STKDPSEVVN GVASQTPVPF HPELQKNQYY SIGGGSNPCP DQYSDPLPLE ENSTTRP00000011260/1-1597 XXXXXXXXXX XXXXXXXXXX XXXXXXXXYY SIGGGSHPRP HPYSDPLPLE ENSBTAP00000011772/1-1579 STTDPSEVVN GVASQPPVPF HPDLQRNQYY SMRGGSHPSP DQYSDSIPLE 451 500 BACU012407/1-1198 GQSADF---- ---------- ---------- ---------- -------PDL ENSP00000315659/1-1577 ARTRDYASLP PKRM-YSQLK TLQKPVLPLY RGSSVSASRV VKPRQSSPQL bmy_14134T0/1-796 ARTRDYSSLP PRRT-YSQPK TLQKPVPRLH STFSRLASRA VRPSQLSPQL ENSTTRP00000011260/1-1597 ARTRDYSSLP PRRT-YSQPK TLQKPVTPLH STFSRLASRA VRPSQLSPQL ENSBTAP00000011772/1-1579 ARTRDYSSLP PRRTSYSQPK TLQKPGPPLH SASSLIASRA VRPSQLSSQL 501 550 BACU012407/1-1198 NGVS------ --EGNEFVKY C---DRD--R NVYQNDKIDL KVKTHAGDQS ENSP00000315659/1-1577 HNLASYTKKH -----HTSSV YSISERLEMK PGPQAQGLVM EAATHSQGDG bmy_14134T0/1-796 QGMARCVKKH LTPKENASSF CSASERSEMK PGLQDKAPAV EAMALSQGDG ENSTTRP00000011260/1-1597 QGMARCVKKH LTPKENASSF CSASEKSEMK PGLQDETPAV EAVALSQGDG ENSBTAP00000011772/1-1579 HGLARCVKKH CTPKESASSF CSAPDRSETK PGLQDRAPAL EAMTQSQGDG 551 600 BACU012407/1-1198 NFDMENRGSD TL-------- ---------- --FANCEYKF QN--YRGTDS ENSP00000315659/1-1577 STDLDSKLTQ QLIEFEKSLA GPGTEPDKIL RHFSIMDFNS EKDIVRGSSK bmy_14134T0/1-796 NTDLDSKLTQ QLIEFEKSLS GPGTEPDKIL RHFSIMDFNS EKDIFRGSSK ENSTTRP00000011260/1-1597 NTDLDSKLTQ QLIEFEKSLS GPGTEPDKIL RHFSIMDFNS EKDIFRGSSK ENSBTAP00000011772/1-1579 STDLDSKLTQ QLIEFEKSLS GPFPEPDKIL RHFSIMDFNS EKDIFRGSSK 601 650 BACU012407/1-1198 LHQMKTLE-- ---------- -CNGI----- ---------- -------DRL ENSP00000315659/1-1577 LITEQELPER RKALRPPPPR PCTPVSTSPH LLVDQNLKPA PPLVVRPSRP bmy_14134T0/1-796 LIIQQELPER RKALRPPPPR PCNPASTPPH LPVDQNLRPE PPLAMRPSRP ENSTTRP00000011260/1-1597 LIIQQELPER RKALRPPPPR PCTPASTPPH LPVDQSLRPE PPLAMRPSRP ENSBTAP00000011772/1-1579 LMTQQELPER RKALRPPPPR PCTPSSTPPH VPGDQNLRLD PPLAMRPSRP 651 700 BACU012407/1-1198 GVMAPGSR-- -GVIPEGLWN QGTGG----- NQGEHHRGIP WDTS------ ENSP00000315659/1-1577 APLPPSAQQR TNAVSPKLLS RHRPTCETLE KEGPGHMGRS LDQTSPCPLV bmy_14134T0/1-796 APLPPSAQQR TNAVPPKLLT CNRPGWETLE KESPENMEKT LDQTSQCPLV ENSTTRP00000011260/1-1597 APLPPSAQQR TNAVPPKLLT CNRPGWESLE KEGPENMEKT LDQTSQCPLV ENSBTAP00000011772/1-1579 APLPPSAQQR TNAVPPKLLT CNRPGWESLE KEGPENVDKT LDQTSQCPLV 701 750 BACU012407/1-1198 ---LEKNSWH LE----EERK VNGLETWKRN SCFRSTAPST LRRSE----- ENSP00000315659/1-1577 LVRIEEMERD LDMYSRAQEE LNLMLEEKQD ESSRAETLED LKFCESNIES bmy_14134T0/1-796 LVRIQEMEQD LDMCCRAQEE LNLLLEEKQE ESLRAETPEN LEFYESNIES ENSTTRP00000011260/1-1597 LVRIQEMEQD LDVCCRAQEE LNLPLEEKQE ESLRADTPEN LEFYESNIES ENSBTAP00000011772/1-1579 LVRIQEMEQD LDMCRRAQEE LNLLLEEKQE ESLRAETLQN LEFYENNIES 751 800 BACU012407/1-1198 FVQNRKRAQE MTLLSSQSSA LVAPSGSVST ESPEQRMLEK RAKVIEELLQ ENSP00000315659/1-1577 LNMELQQLRE MTLLSSQSSS LVAPSGSVSA ENPEQRMLEK RAKVIEELLQ bmy_14134T0/1-796 LNMELQQLRD TLTISE---- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 LDMELQQLRE MTLLSSQSSA LVAPSGSVST ESPEQRMLEK RAKVIEELLQ ENSBTAP00000011772/1-1579 LNMELQQLRE MTLLSSQSSS LMAPSGSVST ENPEQRMLEK RAKVIEELLQ 801 850 BACU012407/1-1198 TERDYIRDLE MCIERIMVPL QQAQIPNIDF EGLFGNMQMV IKVSKQLLAD ENSP00000315659/1-1577 TERDYIRDLE MCIERIMVPM QQAQVPNIDF EGLFGNMQMV IKVSKQLLAA bmy_14134T0/1-796 ---------- -CLKR----- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 TERDYIRDLE MCLERIMVPL QQAQIPNIDF EGLFGNMQMV IKVSKQLLAD ENSBTAP00000011772/1-1579 TERDYIRDLE MCIERIMFPL QQAQIPNIDF EGLFGNMQMV IKVSKQLLTD 851 900 BACU012407/1-1198 LEISDAVGPV FLDHRDELEG TYKVYCQNHD EAISLLEIYE KDEKIQKHLQ ENSP00000315659/1-1577 LEISDAVGPV FLGHRDELEG TYKIYCQNHD EAIALLEIYE KDEKIQKHLQ bmy_14134T0/1-796 ---------- ------NPEG TL-------- ---------- ---------- ENSTTRP00000011260/1-1597 LEISDAVGPV FLDHRDELEG TYKVYCQNHD EAISLLEIYE KDEKIQKHLQ ENSBTAP00000011772/1-1579 LEISDNIGPV FLDHRDELEG TYKVYCQNHD EAISLLEIYE KDEKIQKHLQ 901 950 BACU012407/1-1198 DSLADLK--- ---GCTNYIN LGSFLIKPVQ RVMRYPLLLM ELLNSTPESH ENSP00000315659/1-1577 DSLADLKSLY NEWGCTNYIN LGSFLIKPVQ RVMRYPLLLM ELLNSTPESH bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 DSLADLKSLY NEWGCTNYIN LGSFLIKPVQ RVMRYPLLLM ELLNSTPESH ENSBTAP00000011772/1-1579 DSLADLKSLY NEWGCTNYIN LGSFLIKPVQ RVMRYPLLLM ELLNSTPESH 951 1000 BACU012407/1-1198 PDKVPLTNAV LAVKEINVNI NEYKRRKDL- ---------- ---------- ENSP00000315659/1-1577 PDKVPLTNAV LAVKEINVNI NEYKRRKDL- ---------- ---------- bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 PDKVPLTSAV LAVKEINVNI NEYKRRKDLG KKSILAEKES VHAQKRAFLT ENSBTAP00000011772/1-1579 PDKVPLTSAV LAVKEINVNI NEYKRRKDL- ---------- ---------- 1001 1050 BACU012407/1-1198 ---VLKYRKG DEDSLMEKIS KLNIHSIIKK SNRVSSHLKH LTGFAPQIKD ENSP00000315659/1-1577 ---VLKYRKG DEDSLMEKIS KLNIHSIIKK SNRVSSHLKH LTGFAPQIKD bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 HFPVLKYRKG DEDSLMEKIS KLNIHSIIKK SNRVSSHLKH LTGFAPQ-KD ENSBTAP00000011772/1-1579 ---VLKYRKG DEDSLMEKIS KLNIHSIIKK SNRVSSHLKH LTGFAPQIKD 1051 1100 BACU012407/1-1198 EVFEETEKNF RMQERLIKSF IRDLSLYLQH IRESACVKVV AAVSMWDVCM ENSP00000315659/1-1577 EVFEETEKNF RMQERLIKSF IRDLSLYLQH IRESACVKVV AAVSMWDVCM bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 EVFEETEKNF RMQERLIKSF IRDLSLYLQH IRESACVKVV AAVSMWDVCM ENSBTAP00000011772/1-1579 EVFEETEKNF RMQERLIKSF IRDLSLYLQH IRESACVKVV AAVSMWDVCM 1101 1150 BACU012407/1-1198 EKGHRDLEQF EKVHRYISDQ LFTNFKERTE RLVISPLNQL LSMFTGPHKL ENSP00000315659/1-1577 ERGHRDLEQF ERVHRYISDQ LFTNFKERTE RLVISPLNQL LSMFTGPHKL bmy_14134T0/1-796 ---------- --AQRYI--- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 EKGHRDLEQF EKVHRYISDQ LFTNFKERTE RLVISPLNQL LNMFTGPHKL ENSBTAP00000011772/1-1579 EKGHRDLEQF EKVHRYISDQ LFTNFKERTE RLVISPLNQL LSMFTGPHKL 1151 1200 BACU012407/1-1198 VQKRFDKLLD FYNCTERAEK LKDKKTLEEL QSARNNYEAL NAQLLDELPK ENSP00000315659/1-1577 VQKRFDKLLD FYNCTERAEK LKDKKTLEEL QSARNNYEAL NAQLLDELPK bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 VQKRFDKLLD FYNCTERAEK LKDKKTLEEL QSARNNYEAL NAQLLDELPK ENSBTAP00000011772/1-1579 VQKRFDKLLD FYNCTERAEK LKDKKTLEEL QSARNNYEAL NAQLLDELPK 1201 1250 BACU012407/1-1198 FHQYAQGLFS NCVHGYAEAH CDFVRQALEQ LKPLLSLLKV TGREGNLIAV ENSP00000315659/1-1577 FHQYAQGLFT NCVHGYAEAH CDFVHQALEQ LKPLLSLLKV AGREGNLIAI bmy_14134T0/1-796 ---------- ---------- ---------- LKAIAS---- ---------- ENSTTRP00000011260/1-1597 FHQYAQGLFS NCVHGYAEAH CDFVRQALEQ LKPLLSLLKV TGREGNLIAV ENSBTAP00000011772/1-1579 FHQYAQGLFS NCVHGYAEAH CDFVRQALEQ LKPLLSLLKV TGREGNLIAI 1251 1300 BACU012407/1-1198 FHEEHSRVLQ QLQVFTFFPE SLPATKRSLE RKTMDRQSTR KPFLGLPSYM ENSP00000315659/1-1577 FHEEHSRVLQ QLQVFTFFPE SLPATKKPFE RKTIDRQSAR KPLLGLPSYM bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 FHEEHSRVLQ QLQVFTFFPE SLPATKRSFD RKTMDRQSTR KPLLGLPSYM ENSBTAP00000011772/1-1579 FHEEHSRVLQ QLQVFTFFPE SLPTTKRPFE RKTMDRQSTR KPLLGMPSYM 1301 1350 BACU012407/1-1198 LQSEELRASL LARYPPEKLF QAERNFNAAQ DLDVSLLEGD LVGVIKKKDP ENSP00000315659/1-1577 LQSEELRASL LARYPPEKLF QAERNFNAAQ DLDVSLLEGD LVGVIKKKDP bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 LQSEELRASL LVRYPPEKLF QAERNFNAAQ DLDVSLLEGD LVGVIKKKDP ENSBTAP00000011772/1-1579 LQSEELRASL LARYPPEKLF QAERNFNAAQ DLDVSLLEGD LVGVIKKKDP 1351 1400 BACU012407/1-1198 MGSQNRWLID NGVTKGFVYS SFLKPYNARR SHSDASVGSH SSTESEHGSS ENSP00000315659/1-1577 MGSQNRWLID NGVTKGFVYS SFLKPYNPRR SHSDASVGSH SSTESEHGSS bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 MGSQNRWLID NGVTKGFVYS SFLKPYNARR SHSDASVGSH SSTESEHGSS ENSBTAP00000011772/1-1579 MGSQNRWLID NGVTKGFVYS SFLKPYNARR SHSDASVGSH SSTESEHGSS 1401 1450 BACU012407/1-1198 SPRFPRRQNS GGTLTFNPSS VAVSFSSGPS QKQPPDTS-S LTEFDQGTLS ENSP00000315659/1-1577 SPRFP-RQNS GSTLTFNPSS MAVSFTSGSC QKQPQDASPP PKECDQGTLS bmy_14134T0/1-796 -PRF------ --SITFHT-- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 SPRFPRRQNS GGTLTFNPSS VAVSFSSGPT QKQPPDTS-S LTEFDQGTLS ENSBTAP00000011772/1-1579 SPRFPQRQNS GGTLTFNPSS MAVSFSSGPC QKQPPDAS-S QTEFDQGTLS 1451 1500 BACU012407/1-1198 ASL---NSES SPSRCPSDPD CPSQHGSWDS VDAARDLHQP APTLRSSRNP ENSP00000315659/1-1577 ASLNPSNSES SPSRCPSDPD STSQPRSGDS ADVARDVKQP TATPRSYRNF bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 ASL---NSES SPSRCPSDPD SPSQHGPWDS VDAARDLQQP APTLRSSRNP ENSBTAP00000011772/1-1579 ASL---NSEG SPSRCPSDPD SPSQHRPWDS GDAVRDLHQP APTLRNSRNP 1501 1550 BACU012407/1-1198 RHPEMAGYSV PGRNGQGRDL VKGCARTALS LDDRNGQLEN SEAEGNQVYF ENSP00000315659/1-1577 RHPEIVGYSV PGRNGQSQDL VKGCARTAQA PEDRSTEPDG SEAEGNQVYF bmy_14134T0/1-796 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 RHPEMAGHSV PGRNGQGRDL VKGCARTALS LDDRNGQLEN SEAEGNQVYF ENSBTAP00000011772/1-1579 RHPEMAGSSV SGRNGQSRDL VKAGARTALF LDDRHEQPES SEAEGNQVYF 1551 1600 BACU012407/1-1198 AVYTFKARNP NELSVSANQR LKILEFKDVT GNTEWWLAEV NGKKGYVPSN ENSP00000315659/1-1577 AVYTFKARNP NELSVSANQK LKILEFKDVT GNTEWWLAEV NGKKGYVPSN bmy_14134T0/1-796 --YEF----- ---------- ---------- ---------- ---------- ENSTTRP00000011260/1-1597 AVYTFKARNP NELSVSANQR LKILEFKDVT GNTEWWLAEV NGKKGYVPSN ENSBTAP00000011772/1-1579 AVYTFKARNP NELSVSANQR LKILEFKDVT GNTEWWLAEV NGKKGYVPSN 1601 1650 BACU012407/1-1198 YICKTEYT ENSP00000315659/1-1577 YIRKTEYT bmy_14134T0/1-796 -------- ENSTTRP00000011260/1-1597 YICKTEYT ENSBTAP00000011772/1-1579 YIRKAEYT