KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:44:50 2014 Check: 00 .. Name: ENSTTRP00000013539/1-551 Len: 596 Check: 2124 Weight: 1.00 Name: ENSBTAP00000011779/1-596 Len: 596 Check: 2839 Weight: 1.00 Name: ENSP00000442349/1-595 Len: 596 Check: 3769 Weight: 1.00 Name: bmy_01428T0/1-549 Len: 596 Check: 5773 Weight: 1.00 Name: BACU013620/1-445 Len: 596 Check: 2452 Weight: 1.00 // 1 50 ENSTTRP00000013539/1-551 ---------- ---------- ---------- ---------- ---FALVNDK ENSBTAP00000011779/1-596 TMTACCSWND VFQYETNKII WIQSKTYGTI KWLFHVVLFS YIGFALVSDK ENSP00000442349/1-595 -MPACCSCSD VFQYETNKVT RIQSMNYGTI KWFFHVIIFS YVCFALVSDK bmy_01428T0/1-549 -MTACCSWND VFQYETYKVI RIQSTNYGTI KWFFHVLFFS YISFALVNDK BACU013620/1-445 -MTACCSWND VFQYETYKVI RIQSTNYGTI KWFFHVLFFS YISFALVNDK 51 100 ENSTTRP00000013539/1-551 RYQWKEPVIS SVHAKVKGVG EVKKEIMENG LKKVVWNVFD TADYTVPLQG ENSBTAP00000011779/1-596 RYQRKEPVIS SVHSKIKGIA EVKKEIMENG QTKVVQSVFD MADYTFPLQG ENSP00000442349/1-595 LYQRKEPVIS SVHTKVKGIA EVKEEIVENG VKKLVHSVFD TADYTFPLQG bmy_01428T0/1-549 RYQWKEPVIS SVHAKVKGMA EVKKEIMENG VKKVVWNVFD TADYTVPLQG BACU013620/1-445 RYQWKEPVIS SVHAKVKGMA EVKKEIMQNG VKKVVWNVFD TADYTVPLQG 101 150 ENSTTRP00000013539/1-551 NSFFVMTNFL KIEGQEQGLC PEYPTRGTLC SSDRGCKKGW MGPKSKXXXX ENSBTAP00000011779/1-596 NSFFMMTNFL KTEGQEQGLC PEYPTPRTLC SSDRGCKKGW LGPRSKGIQT ENSP00000442349/1-595 NSFFVMTNFL KTEGQEQRLC PEYPTRRTLC SSDRGCKKGW MDPQSKGIQT bmy_01428T0/1-549 NSFFVMTNFL KIEGQEQGLC PEYPTRRTLC SSDQGCKKGR MGPKSKGIQT BACU013620/1-445 NSFFVMTNFL KIEGQEQGLC PEYPTRRTLC SSDQGCKKGR MGPKSKGIQT 151 200 ENSTTRP00000013539/1-551 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000011779/1-596 GRCIHYNEKQ KTCEVFTWCP VEAEEKAPEP ALLVSAENFT VLIKNNIDFP ENSP00000442349/1-595 GRCVVYEGNQ KTCEVSAWCP IEAVEEAPRP ALLNSAENFT VLIKNNIDFP bmy_01428T0/1-549 GRCIEYKGKQ KTCEVSAWCP VEAVEKAPE- ---------- ---------- BACU013620/1-445 GRCIEYKGKQ KTCEVSAWCP VEAMEKAPEP ALLGSAENFT VLIKNNIDFP 201 250 ENSTTRP00000013539/1-551 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXG ENSBTAP00000011779/1-596 GHNYTTRNIL PGLNTTCTFH KTRDPQCPIF RLGDIFQETG DNFSEVAIQG ENSP00000442349/1-595 GHNYTTRNIL PGLNITCTFH KTQNPQCPIF RLGDIFRETG DNFSDVAIQG bmy_01428T0/1-549 ------RNIL SDLNVTCTFH KTQNPQCPIF RLGDIFRETG DNFSDVAIQG BACU013620/1-445 SHNYTTRNIL PDLNVTCTFH KTQNPQCPIF RLGDIFRETG DNFSDVAIQG 251 300 ENSTTRP00000013539/1-551 GIMGIEIYWD CNLDTWFHHC RPKYSFRRLD DKTAKESLYP GYNFRYAKYY ENSBTAP00000011779/1-596 GIMGIEIYWD CNLDRWFHHC RPKYSFRRLD DKTAKESLYP GYNFRYAKYY ENSP00000442349/1-595 GIMGIEIYWD CNLDRWFHHC RPKYSFRRLD DKTTNVSLYP GYNFRYAKYY bmy_01428T0/1-549 GIMGIEIYWD CNLDRWFHHC RPKYSFRRLD DKTAKESLYP GYNFRYAKYY BACU013620/1-445 GIMGIEIYWD CNLDRWFHHC HPKYSFRRLD DKTAKESLYP GYNFRYAKYY 301 350 ENSTTRP00000013539/1-551 KENNTEKRTL IKAFGIRFDI LVFGTGGKFD IIQLIVYIGS NLSYFGLATV ENSBTAP00000011779/1-596 KENNTEKRTL IKAYGIRFDI LVFGTGGKFD IIQLIVYIGS TLSYFGLATV ENSP00000442349/1-595 KENNVEKRTL IKVFGIRFDI LVFGTGGKFD IIQLVVYIGS TLSYFGLAAV bmy_01428T0/1-549 KENNIEKRTL IKAFGIRFDI LVFGTGGKFD IIQLIVYIGS NLSYFGLATV BACU013620/1-445 KENNTEKRTL IKAFGIRFDI LVFGTGGKFD IIQLIVYIGS NLSYFGLATV 351 400 ENSTTRP00000013539/1-551 FIDFLINTYS NKCCRSHIYP CCKCCEPCKV NEYYYRKKCE SIVEPKQTLK ENSBTAP00000011779/1-596 FIDMLINTYS SKYCRSHVYP WCKCCQPCAV NEYYYKKKYE SIVEPTRTLK ENSP00000442349/1-595 FIDFLIDTYS SNCCRSHIYP WCKCCQPCVV NEYYYRKKCE SIVEPKPTLK bmy_01428T0/1-549 FIDFLINTYS NKCCRSRIYP CCKCCEPCAV NEYYYRKTCE SIVEPKQTLK BACU013620/1-445 FIDFLINTYS NKCCRSRIYP CCKCCEPCAV NEYYYRKTCE SIVEPKQTLK 401 450 ENSTTRP00000013539/1-551 YVSFVDEPHI RMVNQRLLGR SLQDVEGEEV PRPPMDFTDL SRLPLSLHEP ENSBTAP00000011779/1-596 YVSFVDEPCI RMVNERLLGT SLQAVKGEKV LRPQLDFADL SWLHLSLHDS ENSP00000442349/1-595 YVSFVDESHI RMVNQQLLGR SLQDVKGQEV PRPAMDFTDL SRLPLALHDT bmy_01428T0/1-549 YVSFVDEPHI RM-------- ---------- -RPPMDFTDL SRLPLSLHEP BACU013620/1-445 YVSFVDEPHI RMV------- ---------- ---------- ---------- 451 500 ENSTTRP00000013539/1-551 PPIPGQPETI QLLSEGATPR SSDCPNWCQC GKCLPSQLPE RQRWLEELCC ENSBTAP00000011779/1-596 PPIPGQPEEI QLLSEEVHLK SRDCPDWCQC GNCLPSQLPE NQRCLEELCC ENSP00000442349/1-595 PPIPGQPEEI QLLRKEATPR SRDSPVWCQC GSCLPSQLPE SHRCLEELCC bmy_01428T0/1-549 PXTPGQPEAI QLLSEGATPR SSDCPNWCQC GKCLPSQLPE RQRCLEELCC BACU013620/1-445 ---------- ---------- ---------- ---------- ---------N 501 550 ENSTTRP00000013539/1-551 RKKLGACITT SEPFK-LILS RHVLQ-LLHY QEPLLVLDAD STNSQLRHCA ENSBTAP00000011779/1-596 RKKPGACITT SELFRDLVLS RRALQFLLQY QEPLLVLDAD SANSRLRHCA ENSP00000442349/1-595 RKKPGACITT SELFRKLVLS RHVLQFLLLY QEPLLALDVD STNSRLRHCA bmy_01428T0/1-549 RKKLGACITT SEPFKKLILS RQVLQFLLHY QEPLLVLDAD STDSQLRHCA BACU013620/1-445 QRLLGRSLQD VE-------- ---------- ---------- ---------- 551 600 ENSTTRP00000013539/1-551 YRCYTMWRFG SQDLADFAIL PSCCRWRIRR EFPKREGQYS GFKSPY ENSBTAP00000011779/1-596 YRSYTAWRFG SQDLADFAIL PSCCRWRIRR EFPKSEGQYS GFKSPY ENSP00000442349/1-595 YRCYATWRFG SQDMADFANL PSCCRWRIRK EFPKSEGQYS GFKSPY bmy_01428T0/1-549 YRCYTTWRFG SQDLADFAIL PSCCRWRIRR EFPKREGQYS GFKSPY BACU013620/1-445 ---------- GEEVPALAVL PSLHAHRIGQ ---------- ------