KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:44:51 2014 Check: 00 .. Name: ENSTTRP00000001876/1-761 Len: 951 Check: 323 Weight: 1.00 Name: bmy_10139T0/1-828 Len: 951 Check: 8254 Weight: 1.00 Name: ENSP00000290101/1-727 Len: 951 Check: 9848 Weight: 1.00 Name: ENSBTAP00000011785/1-663 Len: 951 Check: 4080 Weight: 1.00 // 1 50 ENSTTRP00000001876/1-761 -VNASASWGH PPWGPLLEES LSKSDFATDL HNLGVDKSFT PHRSAWRSDG bmy_10139T0/1-828 ---------- ---------- ---------- ---------- ------RSDG ENSP00000290101/1-727 MSGRKRSFTF GAYG------ ---------- ---GVDKSFT SRRSVWRSDG ENSBTAP00000011785/1-663 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001876/1-761 QNQRFPQALD LPRVDLAPSQ TASFHPKXXX XXXXXXXXXG SRMDEQRCSF bmy_10139T0/1-828 QNQRFPQALD LPRVDLVPSQ TASLHPKNTD LFEMIEKMQG SRMDEQRCSF ENSP00000290101/1-727 QNQHFPQALD LSRVNLVPSY TPSLYPKNTD LFEMIEKMQG SRMDEQRCSF ENSBTAP00000011785/1-663 ---------- ---------- ---------- ---MIEKMQG SRMDEQRCSF 101 150 ENSTTRP00000001876/1-761 PPPLKTEEDY IPYPSVHEVL GREGPFPLIL LPQFGGYWIE GTNHEITSIP bmy_10139T0/1-828 PPPLKTEEDY IPYPSVHEVL GREGPFPLIL LPQFGGYWIE GTNHEITSIP ENSP00000290101/1-727 PPPLKTEEDY IPYPSVHEVL GREGPFPLIL LPQFGGYWIE GTNHEITSIP ENSBTAP00000011785/1-663 PPPLKTEEDY IPYPSVHEVL GREGPFPLIL LPQFGGYWIE GTNHEITSIP 151 200 ENSTTRP00000001876/1-761 ETEPLQSPTA KVKLECNPTA RIYRKHFLGK EHFNYYSLDT ALGHLVFSLK bmy_10139T0/1-828 ETEPLQSPTA KVKLECNPTA RIYRKHFLGK EHFNYYSLDT ALGHLVFSLK ENSP00000290101/1-727 ETEPLQSPTT KVKLECNPTA RIYRKHFLGK EHFNYYSLDA ALGHLVFSLK ENSBTAP00000011785/1-663 ETEPLQSPTT KVKLECNHTA RLYRKHFLGK EHFNYYSLDT ALGHLVFSLK 201 250 ENSTTRP00000001876/1-761 YDVIGDQEHL RLLLRAKCRT YHDVIPISCL TEFPNVVQMA KLVCEDVNVD bmy_10139T0/1-828 ---------- -----TKCRT YHDVIPISCL TEFPNVVQMA KLVCEDVNVD ENSP00000290101/1-727 YDVIGDQEHL RLLLRTKCRT YHDVIPISCL TEFPNVVQMA KLVCEDVNVD ENSBTAP00000011785/1-663 YDVIGDQEHL RLLLRTKCRT YHDVIPISCL TEFPNVVQMA KLVCEDVNVD 251 300 ENSTTRP00000001876/1-761 RFYPVLYPKA SRLIVTFDEH VISNNFKFGV IYQKLGQTSE EELFSTNEES bmy_10139T0/1-828 RFYPVLYPK- ---------- ---------- -------TSE EELFSTNEES ENSP00000290101/1-727 RFYPVLYPKA SRLIVTFDEH VISNNFKFGV IYQKLGQTSE EELFSTNEES ENSBTAP00000011785/1-663 RFYPVLYPKA SRLIVTFDEH VISNNFKFGV IYQKLGQTSE EELFSTNEES 301 350 ENSTTRP00000001876/1-761 PAFVEFLEFL GQKVKLQDFK GFRGGLDVTH GQTGTESVYC NFRNKEIMFH bmy_10139T0/1-828 PAFVEFLEFL GQKVKLQDFK GFRGGLDVTH GQTGTESVYC TFRNKEIMFH ENSP00000290101/1-727 PAFVEFLEFL GQKVKLQDFK GFRGGLDVTH GQTGTESVYC NFRNKEIMFH ENSBTAP00000011785/1-663 PAFVEFLEFL GQKVKLQDFK GFRGGLDVTH GQTGTESVYC NFRNKEIMFH 351 400 ENSTTRP00000001876/1-761 VSTKLPYTEG DAXXLQRKRH IGNDIVAVVF QDENTPFVPD MIASNFLHAY bmy_10139T0/1-828 VSTKLPYTEG DAQQLQRKRH IGNDIVAVVF QDENTPFVPD MIASNFLHAY ENSP00000290101/1-727 VSTKLPYTEG DAQQLQRKRH IGNDIVAVVF QDENTPFVPD MIASNFLHAY ENSBTAP00000011785/1-663 VSTKLPYTEG DAQQLQRKRH IGNDIVAVVF QDENTPFVPD MIASNFLHAY 401 450 ENSTTRP00000001876/1-761 VVVQAESGGP DGPLYKVSVT ARDDVPFFGP PLPDPAVFRK GPEFQEFLLT bmy_10139T0/1-828 VVVQAESGGP DGPLYKVSVT ARDDVPFFGP PLPDPAVFRK GPEFQEFLLT ENSP00000290101/1-727 VVVQAEGGGP DGPLYKVSVT ARDDVPFFGP PLPDPAVFRK GPEFQEFLLT ENSBTAP00000011785/1-663 VVVQAEGGGP DGPLYKVSVT ARDDVPFFGP PLPDPAVFRK GPEFQEFLLT 451 500 ENSTTRP00000001876/1-761 KLINAEYACY KAEKFAKLEE RTRAALLETL YEELHIHSQS MMGLGGDEDK bmy_10139T0/1-828 KLINAEYACY KAEKFAKLEE RTRAALLETL YEELHIHSQS MMGLGGDEDK ENSP00000290101/1-727 KLINAEYACY KAEKFAKLEE RTRAALLETL YEELHIHSQS MMGLGGDEDK ENSBTAP00000011785/1-663 KLINAEYACY KAEKFAKLEE RTRAALLETL YEELHIHSQS MMGLGGDEDK 501 550 ENSTTRP00000001876/1-761 MENGGGGGGF FESFKRVIRS RRQSMDAMRM SYKKLNTVST SHSGSFAPNN bmy_10139T0/1-828 MENGGGGGGF FESFKRVIRS RSQSMDAMGL SNKKPNTVST SHSGSFAPNN ENSP00000290101/1-727 MENGSGGGGF FESFKRVIRS RSQSMDAMGL SNKKPNTVST SHSGSFAPNN ENSBTAP00000011785/1-663 MENGGGGGGF FESFKRVIRS RSQSMDAMGL SNKKPHTVST SHSGSFTPNN 551 600 ENSTTRP00000001876/1-761 PDLAKAAGIS LLIPGKSASR FGRRGSAIGI GTVEESLIVP GKSPTRKKSG bmy_10139T0/1-828 PDLAKAAGIS LIVP------ ---------- ---------- GKSPTRKKSG ENSP00000290101/1-727 PDLAKAAGIS LIVP------ ---------- ---------- GKSPTRKKSG ENSBTAP00000011785/1-663 PDLAKAAGIS LIVP------ ---------- ---------- GKSPTRKKSG 601 650 ENSTTRP00000001876/1-761 PFGSRRSSAI GIENIQEVQE KRESPPAGQK TPDSGHVSQE PKSENSSTQS bmy_10139T0/1-828 PFGSRRSSAI GIENIQEVQE KRESPPAGQK TPDSGHVSQE PKSENSSTQS ENSP00000290101/1-727 PFGSRRSSAI GIENIQEVQE KRESPPAGQK TPDSGHVSQE PKSENSSTQS ENSBTAP00000011785/1-663 PFGSRRSSAI GIENIQEVQE KRESPPAGQK TPDSGHVSQE PKSENSSTQS 651 700 ENSTTRP00000001876/1-761 SPEMPTTKNR AETAAQRAEV LMDFSRSSSS ASSFASVVEE AEGVDGDDTG bmy_10139T0/1-828 SPEMPTTKNR AETAVQRAEV LKDFSRSSSS ASSFASVVEE AEGVDGDDTG ENSP00000290101/1-727 SPEMPTTKNR AETAAQRAEA LKDFSRSSSS ASSFASVVEE TEGVDGEDTG ENSBTAP00000011785/1-663 SPEMPTTKNR AETVAQRAEV LKDFSRSSSS ASSFASVVEE AEGVDADDTG 701 750 ENSTTRP00000001876/1-761 LESVSSSGTP HKRDSFIYST WLEDSVSTTS GGSS------ --PDAGKSGD bmy_10139T0/1-828 LESVSSSGTP HKRDSFIYST WLEDSVSTTS GGSS------ --PDAGKSGD ENSP00000290101/1-727 LESVSSSGTP HKRDSFIYST WLEDSVSTTS GGSSPGPSRS PHPDAGKLGD ENSBTAP00000011785/1-663 LESVSSSGTP HKRDSFIYST WLEDSISTTS GGSSPGPSRS PHPDAGKLGD 751 800 ENSTTRP00000001876/1-761 LACPEIKIQL EASEQHTPQL ---------- ---------- ---------- bmy_10139T0/1-828 PACPEIKIQL EASEQHMPQL MRPQKHKVKM LCQIQADGTS APEASTSLWA ENSP00000290101/1-727 PACPEIKIQL EASEQHMPQL ---------- ---------- ---------- ENSBTAP00000011785/1-663 PACPEIKIQL EASEQHTPQL ---------- ---------- ---------- 801 850 ENSTTRP00000001876/1-761 ---------- ---------- ---------- ---------- ---------- bmy_10139T0/1-828 APGLPNPPPG PLSGLSLQGG AIQTWEWGSC WHHPHPLGWG AGWGREWSLE ENSP00000290101/1-727 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011785/1-663 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000001876/1-761 ---------- ---------- ---------- ---------- ---------- bmy_10139T0/1-828 TGLQAWLICH PWAPRQRPAF RPQHPFWKPP VAVCMSVTVV QNKFYLSLLY ENSP00000290101/1-727 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000011785/1-663 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000001876/1-761 ---------- ---------- ---------- ---------- ---------- bmy_10139T0/1-828 PELDVASCDP APHLDQPDRS QWHHGGGGEP IHPRIRAAGS ASTSRAKPQA ENSP00000290101/1-727 ------GC-- ---------- ---------- ---------- ---------- ENSBTAP00000011785/1-663 ------GC-- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000001876/1-761 - bmy_10139T0/1-828 P ENSP00000290101/1-727 - ENSBTAP00000011785/1-663 -